Wall clock time and date at job start Tue Mar 31 2020 19:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47236 * 2 1 4 4 N 1.46498 * 109.46983 * 120.00206 * 2 1 3 5 5 C 1.36933 * 119.99827 * 275.00098 * 4 2 1 6 6 H 1.08000 * 120.00149 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99765 * 180.27759 * 5 4 2 8 8 N 1.31612 * 120.00023 * 359.72061 * 7 5 4 9 9 Si 1.86804 * 119.99833 * 179.72310 * 7 5 4 10 10 H 1.48507 * 109.47122 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47077 * 119.99852 * 9 7 5 12 12 H 1.48495 * 109.47033 * 239.99882 * 9 7 5 13 13 C 1.53001 * 109.47214 * 239.99705 * 2 1 3 14 14 H 1.09007 * 109.50702 * 65.00626 * 13 2 1 15 15 C 1.53295 * 109.51466 * 185.09922 * 13 2 1 16 16 N 1.47162 * 108.37885 * 172.17982 * 15 13 2 17 17 C 1.34779 * 120.94706 * 129.50250 * 16 15 13 18 18 O 1.21617 * 119.99607 * 353.26577 * 17 16 15 19 19 C 1.47317 * 120.00086 * 173.26741 * 17 16 15 20 20 C 1.36302 * 126.22761 * 172.87405 * 19 17 16 21 21 N 1.35750 * 106.91995 * 179.97438 * 20 19 17 22 22 C 1.35684 * 107.69490 * 0.12075 * 21 20 19 23 23 N 1.30601 * 108.91308 * 359.57867 * 22 21 20 24 24 C 1.51604 * 109.82411 * 179.80449 * 22 21 20 25 25 C 1.54502 * 104.27465 * 343.37141 * 24 22 21 26 26 C 1.47072 * 141.30622 * 180.23794 * 21 20 19 27 27 C 1.47160 * 118.07467 * 309.54954 * 16 15 13 28 28 C 1.53295 * 108.38273 * 50.50286 * 27 16 15 29 29 O 1.42958 * 109.51902 * 304.90162 * 13 2 1 30 30 H 1.08991 * 109.47058 * 299.99718 * 1 2 3 31 31 H 1.08997 * 109.46818 * 60.00076 * 1 2 3 32 32 H 1.09003 * 109.47035 * 179.97438 * 1 2 3 33 33 H 0.97005 * 120.00322 * 95.00047 * 4 2 1 34 34 H 0.97010 * 119.99975 * 179.97438 * 8 7 5 35 35 H 1.09007 * 109.68245 * 291.95370 * 15 13 2 36 36 H 1.09005 * 109.67756 * 52.50859 * 15 13 2 37 37 H 1.08003 * 126.53584 * 359.94114 * 20 19 17 38 38 H 1.08996 * 110.46655 * 224.66873 * 24 22 21 39 39 H 1.08997 * 110.46994 * 102.06858 * 24 22 21 40 40 H 1.09005 * 110.94295 * 267.20050 * 25 24 22 41 41 H 1.08999 * 110.97397 * 143.52016 * 25 24 22 42 42 H 1.09003 * 110.22539 * 316.09462 * 26 21 20 43 43 H 1.08998 * 110.22723 * 77.95713 * 26 21 20 44 44 H 1.08997 * 109.68075 * 290.78006 * 27 16 15 45 45 H 1.08998 * 109.71377 * 170.23821 * 27 16 15 46 46 H 1.09003 * 109.51379 * 187.77560 * 28 27 16 47 47 H 1.08994 * 109.51568 * 67.62224 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0404 2.4241 7 6 2.6172 -0.6606 3.5077 8 7 2.9302 -1.9376 3.4486 9 14 2.8029 0.2732 5.1149 10 1 2.3878 1.6854 4.9178 11 1 1.9472 -0.3544 6.1537 12 1 4.2218 0.2311 5.5507 13 6 2.0401 -0.7213 -1.2492 14 1 1.7521 -0.1588 -2.1374 15 6 3.5676 -0.8341 -1.1876 16 7 4.0148 -1.6909 -2.2974 17 6 4.9973 -1.2914 -3.1290 18 8 5.4433 -0.1631 -3.0455 19 6 5.5310 -2.2216 -4.1391 20 6 6.4197 -1.9155 -5.1262 21 7 6.6406 -3.0571 -5.8268 22 6 5.8887 -4.0373 -5.2657 23 7 5.2315 -3.5395 -4.2528 24 6 6.0958 -5.3379 -6.0168 25 6 6.7390 -4.9072 -7.3539 26 6 7.4113 -3.5723 -6.9685 27 6 3.3573 -2.9956 -2.4733 28 6 1.8401 -2.7765 -2.4730 29 8 1.4724 -2.0320 -1.3092 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6319 1.1526 34 1 3.2577 -2.3938 4.2395 35 1 4.0130 0.1561 -1.2847 36 1 3.8648 -1.2794 -0.2381 37 1 6.8630 -0.9490 -5.3153 38 1 5.1405 -5.8315 -6.1948 39 1 6.7681 -5.9942 -5.4643 40 1 5.9792 -4.7538 -8.1203 41 1 7.4799 -5.6359 -7.6830 42 1 7.3636 -2.8718 -7.8023 43 1 8.4481 -3.7413 -6.6778 44 1 3.6326 -3.6589 -1.6534 45 1 3.6641 -3.4371 -3.4215 46 1 1.3329 -3.7412 -2.4633 47 1 1.5521 -2.2219 -3.3660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570973325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:44 Heat of formation + Delta-G solvation = 25.337762 kcal Electronic energy + Delta-G solvation = -29454.625074 eV Core-core repulsion = 25446.988730 eV Total energy + Delta-G solvation = -4007.636344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.83034 -39.86299 -38.10692 -36.59106 -35.31228 -34.28051 -32.42412 -32.13601 -30.11485 -29.31552 -28.25126 -27.68509 -27.35752 -24.40640 -23.43339 -23.26927 -22.16006 -21.41513 -20.44069 -19.53173 -18.96747 -17.45076 -17.17649 -16.81608 -16.45072 -16.08999 -15.50279 -15.35856 -14.72524 -14.55872 -14.32370 -14.22177 -13.94764 -13.85357 -13.72555 -13.36248 -13.23327 -13.07688 -12.84201 -12.69496 -12.27178 -12.20758 -11.79976 -11.72880 -11.61680 -11.17205 -11.00271 -10.76475 -10.67183 -10.37697 -10.22780 -10.14268 -10.00380 -9.93712 -9.72216 -9.45089 -9.30667 -8.82585 -8.72274 -8.07018 -6.81788 -5.64236 -2.92207 1.45168 2.15421 2.22021 3.21845 3.35197 3.51460 3.56622 3.56979 3.59133 3.86031 4.04824 4.14708 4.25164 4.59516 4.69346 4.71735 4.77713 4.83646 5.05407 5.17087 5.20070 5.26606 5.33413 5.40248 5.50113 5.58679 5.62385 5.69081 5.80786 5.88166 5.94553 6.01041 6.12665 6.22609 6.35895 6.45903 6.52685 6.53924 6.63645 6.81368 6.88545 6.93425 7.27092 7.54547 7.69520 7.73803 7.82195 8.40256 8.53917 9.65970 10.24094 10.61247 11.58160 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.002674 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.527453 B =10468.387931 C =10815.320001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.182 3.818 3 H 0.059 0.941 4 N -0.718 5.718 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.930 5.930 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C 0.080 3.920 14 H 0.053 0.947 15 C 0.085 3.915 16 N -0.595 5.595 17 C 0.602 3.398 18 O -0.549 6.549 19 C -0.044 4.044 20 C 0.052 3.948 21 N -0.480 5.480 22 C 0.186 3.814 23 N -0.444 5.444 24 C -0.041 4.041 25 C -0.129 4.129 26 C 0.101 3.899 27 C 0.054 3.946 28 C 0.048 3.952 29 O -0.363 6.363 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.390 0.610 34 H 0.253 0.747 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.186 0.814 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.137 0.863 46 H 0.099 0.901 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.508 -8.132 -27.614 29.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.072 3.928 3 H 0.077 0.923 4 N -0.360 5.360 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C 0.020 3.980 14 H 0.071 0.929 15 C -0.036 4.036 16 N -0.327 5.327 17 C 0.389 3.611 18 O -0.427 6.427 19 C -0.173 4.173 20 C -0.086 4.086 21 N -0.163 5.163 22 C -0.078 4.078 23 N -0.165 5.165 24 C -0.080 4.080 25 C -0.168 4.168 26 C -0.020 4.020 27 C -0.069 4.069 28 C -0.030 4.030 29 O -0.281 6.281 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.224 0.776 34 H 0.063 0.937 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.203 0.797 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.154 0.846 46 H 0.117 0.883 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.245 -7.758 -26.869 28.890 hybrid contribution 0.914 0.679 0.320 1.183 sum 8.160 -7.078 -26.548 28.662 Atomic orbital electron populations 1.22316 0.98536 1.01583 0.99437 1.20262 0.92772 0.94591 0.85218 0.92308 1.42426 1.77631 1.11006 1.04949 1.19292 1.36056 0.93848 0.87466 0.91171 1.24720 1.02386 0.95950 0.97943 1.69689 1.50886 1.08624 1.28644 0.86157 0.77195 0.78808 0.84283 1.20626 1.22041 1.22040 1.22861 0.91615 0.84280 0.99224 0.92939 1.22471 0.95068 0.96571 0.89527 1.47968 1.35601 1.19452 1.29634 1.16856 0.79315 0.85262 0.79643 1.90780 1.60887 1.19441 1.71587 1.20577 1.04331 0.91337 1.01070 1.22200 1.01231 0.90891 0.94239 1.46330 1.34938 1.09366 1.25692 1.24666 0.95636 0.92718 0.94734 1.70108 1.22921 1.07396 1.16077 1.20695 1.03448 0.90871 0.92984 1.22738 1.01112 0.95374 0.97536 1.22476 0.95898 0.96533 0.87097 1.23174 0.92653 0.84576 1.06514 1.22937 0.94357 0.96928 0.88765 1.88069 1.70881 1.27190 1.41971 0.92904 0.94937 0.92465 0.77556 0.93715 0.88674 0.88341 0.79673 0.88042 0.88249 0.89249 0.87809 0.88836 0.88854 0.90846 0.84639 0.88287 0.93845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.30 37.16 0.35 -2.79 16 2 C 0.18 3.88 2.80 -67.93 -0.19 3.68 16 3 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 4 N -0.72 -18.60 4.24 -53.43 -0.23 -18.83 16 5 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 6 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.93 -28.88 13.06 55.49 0.72 -28.15 16 9 Si 0.90 23.10 29.55 -169.99 -5.02 18.07 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 12 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 13 C 0.08 1.51 2.57 -26.58 -0.07 1.44 16 14 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 15 C 0.09 1.70 5.84 -3.53 -0.02 1.68 16 16 N -0.60 -10.72 3.02 -173.57 -0.52 -11.24 16 17 C 0.60 10.85 7.68 -12.57 -0.10 10.75 16 18 O -0.55 -11.16 16.36 5.26 0.09 -11.08 16 19 C -0.04 -0.66 6.65 -83.19 -0.55 -1.21 16 20 C 0.05 0.61 11.76 -16.52 -0.19 0.41 16 21 N -0.48 -4.25 3.55 -112.01 -0.40 -4.65 16 22 C 0.19 1.85 8.58 -154.30 -1.32 0.52 16 23 N -0.44 -6.02 7.83 -6.96 -0.05 -6.08 16 24 C -0.04 -0.19 6.86 -26.65 -0.18 -0.37 16 25 C -0.13 -0.25 7.16 -25.24 -0.18 -0.43 16 26 C 0.10 0.38 7.77 -3.02 -0.02 0.36 16 27 C 0.05 0.85 6.23 -3.53 -0.02 0.83 16 28 C 0.05 0.73 6.99 37.31 0.26 0.99 16 29 O -0.36 -6.89 9.24 -35.23 -0.33 -7.22 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.18 7.56 -51.93 -0.39 0.79 16 33 H 0.39 10.92 7.08 -40.82 -0.29 10.64 16 34 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.09 1.95 7.06 -51.93 -0.37 1.58 16 36 H 0.10 2.27 6.93 -51.93 -0.36 1.91 16 37 H 0.19 1.85 8.06 -52.48 -0.42 1.42 16 38 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 42 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.14 1.97 4.34 -54.16 -0.23 1.74 16 46 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -36.51 376.73 -9.66 -46.18 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.10 Total: 8.79 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -2.49 Total: 8.52 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: -0.48 Total: -68.95 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.24 Total: -18.29 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.51 -9.66 -46.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570973325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.513 kcal (2) G-P(sol) polarization free energy of solvation -36.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds