Wall clock time and date at job start Tue Mar 31 2020 19:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47236 * 2 1 4 4 N 1.46498 * 109.46983 * 120.00206 * 2 1 3 5 5 C 1.36933 * 119.99827 * 275.00098 * 4 2 1 6 6 H 1.08000 * 120.00149 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99765 * 180.27759 * 5 4 2 8 8 N 1.31612 * 120.00023 * 359.72061 * 7 5 4 9 9 Si 1.86804 * 119.99833 * 179.72310 * 7 5 4 10 10 H 1.48507 * 109.47122 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47077 * 119.99852 * 9 7 5 12 12 H 1.48495 * 109.47033 * 239.99882 * 9 7 5 13 13 C 1.53001 * 109.47214 * 239.99705 * 2 1 3 14 14 H 1.09007 * 109.50702 * 65.00626 * 13 2 1 15 15 C 1.53295 * 109.51466 * 185.09922 * 13 2 1 16 16 N 1.47162 * 108.37885 * 172.17982 * 15 13 2 17 17 C 1.34779 * 120.94706 * 129.50250 * 16 15 13 18 18 O 1.21617 * 119.99607 * 353.26577 * 17 16 15 19 19 C 1.47317 * 120.00086 * 173.26741 * 17 16 15 20 20 C 1.36302 * 126.22761 * 172.87405 * 19 17 16 21 21 N 1.35750 * 106.91995 * 179.97438 * 20 19 17 22 22 C 1.35684 * 107.69490 * 0.12075 * 21 20 19 23 23 N 1.30601 * 108.91308 * 359.57867 * 22 21 20 24 24 C 1.51604 * 109.82411 * 179.80449 * 22 21 20 25 25 C 1.54502 * 104.27465 * 343.37141 * 24 22 21 26 26 C 1.47072 * 141.30622 * 180.23794 * 21 20 19 27 27 C 1.47160 * 118.07467 * 309.54954 * 16 15 13 28 28 C 1.53295 * 108.38273 * 50.50286 * 27 16 15 29 29 O 1.42958 * 109.51902 * 304.90162 * 13 2 1 30 30 H 1.08991 * 109.47058 * 299.99718 * 1 2 3 31 31 H 1.08997 * 109.46818 * 60.00076 * 1 2 3 32 32 H 1.09003 * 109.47035 * 179.97438 * 1 2 3 33 33 H 0.97005 * 120.00322 * 95.00047 * 4 2 1 34 34 H 0.97010 * 119.99975 * 179.97438 * 8 7 5 35 35 H 1.09007 * 109.68245 * 291.95370 * 15 13 2 36 36 H 1.09005 * 109.67756 * 52.50859 * 15 13 2 37 37 H 1.08003 * 126.53584 * 359.94114 * 20 19 17 38 38 H 1.08996 * 110.46655 * 224.66873 * 24 22 21 39 39 H 1.08997 * 110.46994 * 102.06858 * 24 22 21 40 40 H 1.09005 * 110.94295 * 267.20050 * 25 24 22 41 41 H 1.08999 * 110.97397 * 143.52016 * 25 24 22 42 42 H 1.09003 * 110.22539 * 316.09462 * 26 21 20 43 43 H 1.08998 * 110.22723 * 77.95713 * 26 21 20 44 44 H 1.08997 * 109.68075 * 290.78006 * 27 16 15 45 45 H 1.08998 * 109.71377 * 170.23821 * 27 16 15 46 46 H 1.09003 * 109.51379 * 187.77560 * 28 27 16 47 47 H 1.08994 * 109.51568 * 67.62224 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0404 2.4241 7 6 2.6172 -0.6606 3.5077 8 7 2.9302 -1.9376 3.4486 9 14 2.8029 0.2732 5.1149 10 1 2.3878 1.6854 4.9178 11 1 1.9472 -0.3544 6.1537 12 1 4.2218 0.2311 5.5507 13 6 2.0401 -0.7213 -1.2492 14 1 1.7521 -0.1588 -2.1374 15 6 3.5676 -0.8341 -1.1876 16 7 4.0148 -1.6909 -2.2974 17 6 4.9973 -1.2914 -3.1290 18 8 5.4433 -0.1631 -3.0455 19 6 5.5310 -2.2216 -4.1391 20 6 6.4197 -1.9155 -5.1262 21 7 6.6406 -3.0571 -5.8268 22 6 5.8887 -4.0373 -5.2657 23 7 5.2315 -3.5395 -4.2528 24 6 6.0958 -5.3379 -6.0168 25 6 6.7390 -4.9072 -7.3539 26 6 7.4113 -3.5723 -6.9685 27 6 3.3573 -2.9956 -2.4733 28 6 1.8401 -2.7765 -2.4730 29 8 1.4724 -2.0320 -1.3092 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6319 1.1526 34 1 3.2577 -2.3938 4.2395 35 1 4.0130 0.1561 -1.2847 36 1 3.8648 -1.2794 -0.2381 37 1 6.8630 -0.9490 -5.3153 38 1 5.1405 -5.8315 -6.1948 39 1 6.7681 -5.9942 -5.4643 40 1 5.9792 -4.7538 -8.1203 41 1 7.4799 -5.6359 -7.6830 42 1 7.3636 -2.8718 -7.8023 43 1 8.4481 -3.7413 -6.6778 44 1 3.6326 -3.6589 -1.6534 45 1 3.6641 -3.4371 -3.4215 46 1 1.3329 -3.7412 -2.4633 47 1 1.5521 -2.2219 -3.3660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570973325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:44 Heat of formation + Delta-G solvation = 0.627834 kcal Electronic energy + Delta-G solvation = -29455.696577 eV Core-core repulsion = 25446.988730 eV Total energy + Delta-G solvation = -4008.707847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.61069 -41.26339 -39.53206 -37.24469 -37.03522 -35.74868 -34.15930 -33.09464 -31.70579 -30.34921 -30.04045 -28.65107 -28.20027 -26.01073 -25.21289 -24.49882 -23.00672 -22.33537 -21.21799 -21.16180 -20.21441 -19.32829 -18.23535 -17.77119 -17.57588 -17.18169 -16.94423 -16.70917 -16.28021 -15.99696 -15.82316 -15.27115 -15.05809 -15.02088 -14.87510 -14.67219 -14.20651 -14.16233 -13.97363 -13.94594 -13.47046 -13.40481 -13.11007 -12.97387 -12.78916 -12.53368 -12.48141 -12.44660 -12.11972 -11.92286 -11.84199 -11.67906 -11.59538 -11.41119 -11.11718 -10.94821 -10.81669 -10.49740 -9.73936 -9.42535 -8.94683 -7.88878 -5.16691 0.45160 1.26253 1.47410 1.48558 1.52625 1.58368 1.98030 2.34373 2.58418 2.71730 2.83425 3.39371 3.44929 3.54481 3.69483 3.85000 3.95710 3.97030 4.01419 4.09438 4.17477 4.22726 4.30375 4.36023 4.46020 4.51355 4.55115 4.59595 4.64605 4.79438 4.85930 4.88998 4.90918 4.94937 5.03612 5.10526 5.10743 5.17512 5.22051 5.31540 5.54790 5.61673 5.65063 5.88216 6.26292 6.31298 6.32896 6.74196 7.06106 7.38750 8.14266 8.39895 9.34773 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.002674 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.527453 B =10468.387931 C =10815.320001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.174 3.826 3 H 0.061 0.939 4 N -0.727 5.727 5 C -0.233 4.233 6 H 0.077 0.923 7 C -0.079 4.079 8 N -0.969 5.969 9 Si 0.970 3.030 10 H -0.265 1.265 11 H -0.294 1.294 12 H -0.297 1.297 13 C 0.093 3.907 14 H 0.075 0.925 15 C 0.095 3.905 16 N -0.600 5.600 17 C 0.596 3.404 18 O -0.584 6.584 19 C -0.085 4.085 20 C 0.062 3.938 21 N -0.475 5.475 22 C 0.188 3.812 23 N -0.481 5.481 24 C -0.042 4.042 25 C -0.114 4.114 26 C 0.089 3.911 27 C 0.059 3.941 28 C 0.047 3.953 29 O -0.383 6.383 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.376 0.624 34 H 0.248 0.752 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.198 0.802 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.136 0.864 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.053 0.947 45 H 0.154 0.846 46 H 0.126 0.874 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.796 -8.884 -30.823 33.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.065 3.935 3 H 0.079 0.921 4 N -0.368 5.368 5 C -0.365 4.365 6 H 0.095 0.905 7 C -0.271 4.271 8 N -0.620 5.620 9 Si 0.800 3.200 10 H -0.189 1.189 11 H -0.222 1.222 12 H -0.225 1.225 13 C 0.034 3.966 14 H 0.093 0.907 15 C -0.028 4.028 16 N -0.331 5.331 17 C 0.386 3.614 18 O -0.465 6.465 19 C -0.213 4.213 20 C -0.078 4.078 21 N -0.156 5.156 22 C -0.076 4.076 23 N -0.202 5.202 24 C -0.081 4.081 25 C -0.152 4.152 26 C -0.030 4.030 27 C -0.063 4.063 28 C -0.030 4.030 29 O -0.302 6.302 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.208 0.792 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.215 0.785 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.154 0.846 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.072 0.928 45 H 0.171 0.829 46 H 0.143 0.857 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.515 -8.507 -30.143 32.209 hybrid contribution 0.909 0.845 1.126 1.675 sum 8.424 -7.662 -29.017 31.172 Atomic orbital electron populations 1.22132 0.96731 1.01152 1.00555 1.20510 0.93901 0.94556 0.84554 0.92073 1.42546 1.77990 1.10425 1.05840 1.19682 1.34287 0.94189 0.88304 0.90466 1.25531 1.03279 0.96888 1.01384 1.69858 1.52731 1.10271 1.29163 0.85104 0.76549 0.78273 0.80052 1.18939 1.22184 1.22494 1.22613 0.90446 0.84822 0.98708 0.90741 1.22117 0.96050 0.95884 0.88751 1.48038 1.36068 1.19877 1.29106 1.17386 0.78613 0.85486 0.79941 1.90731 1.61837 1.21093 1.72847 1.20203 1.06956 0.91944 1.02155 1.22319 0.99823 0.92237 0.93429 1.46706 1.34636 1.08044 1.26243 1.25651 0.93917 0.94787 0.93284 1.69870 1.25075 1.06929 1.18352 1.21032 1.04736 0.88550 0.93821 1.22823 1.01751 0.94670 0.95941 1.22999 0.96286 0.97796 0.85887 1.23269 0.93131 0.83310 1.06627 1.23184 0.93847 0.97918 0.88025 1.88033 1.70933 1.27213 1.44027 0.94065 0.91441 0.93613 0.79191 0.94318 0.89900 0.92319 0.78514 0.86903 0.86975 0.88331 0.84553 0.86994 0.87229 0.92825 0.82919 0.85651 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 9.30 71.98 0.67 -4.97 16 2 C 0.17 7.46 2.80 44.99 0.13 7.59 16 3 H 0.06 2.59 8.08 -2.39 -0.02 2.57 16 4 N -0.73 -38.90 4.24 -322.94 -1.37 -40.27 16 5 C -0.23 -13.47 9.93 84.04 0.83 -12.63 16 6 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 7 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 8 N -0.97 -62.32 13.06 21.65 0.28 -62.04 16 9 Si 0.97 48.49 29.55 68.60 2.03 50.51 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 12 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 13 C 0.09 3.59 2.57 30.69 0.08 3.67 16 14 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 15 C 0.10 4.00 5.84 86.35 0.50 4.50 16 16 N -0.60 -22.62 3.02 -821.29 -2.48 -25.10 16 17 C 0.60 22.48 7.68 86.63 0.67 23.15 16 18 O -0.58 -24.98 16.36 -4.08 -0.07 -25.04 16 19 C -0.09 -2.58 6.65 40.50 0.27 -2.31 16 20 C 0.06 1.42 11.76 83.64 0.98 2.41 16 21 N -0.47 -7.36 3.55 -508.29 -1.80 -9.16 16 22 C 0.19 3.40 8.58 138.18 1.18 4.58 16 23 N -0.48 -12.94 7.83 -175.92 -1.38 -14.31 16 24 C -0.04 -0.25 6.86 30.65 0.21 -0.04 16 25 C -0.11 0.09 7.16 31.56 0.23 0.32 16 26 C 0.09 0.33 7.77 86.73 0.67 1.00 16 27 C 0.06 1.90 6.23 86.35 0.54 2.44 16 28 C 0.05 1.40 6.99 72.08 0.50 1.90 16 29 O -0.38 -14.59 9.24 -148.98 -1.38 -15.97 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.04 1.86 7.56 -2.39 -0.02 1.84 16 33 H 0.38 22.07 7.08 -92.70 -0.66 21.42 16 34 H 0.25 15.46 8.31 -92.70 -0.77 14.69 16 35 H 0.08 3.62 7.06 -2.38 -0.02 3.60 16 36 H 0.06 2.92 6.93 -2.38 -0.02 2.91 16 37 H 0.20 3.83 8.06 -2.91 -0.02 3.81 16 38 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.10 -0.19 8.14 -2.38 -0.02 -0.21 16 41 H 0.14 -0.89 8.14 -2.39 -0.02 -0.91 16 42 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 45 H 0.15 4.49 4.34 -6.79 -0.03 4.46 16 46 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 47 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -83.81 376.73 2.08 -81.73 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.31 Total: 32.35 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: 7.93 Total: 27.32 kcal Atomic # 7 Polarization: -144.15 SS G_CDS: -6.75 Total: -150.90 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -1.44 Total: -41.01 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.51 kcal Total: -83.81 2.08 -81.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570973325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.354 kcal (2) G-P(sol) polarization free energy of solvation -83.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds