Wall clock time and date at job start Tue Mar 31 2020 18:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50705 * 119.99734 * 2 1 4 4 N 1.46502 * 109.46691 * 125.00333 * 3 2 1 5 5 C 1.36733 * 127.14060 * 90.00104 * 4 3 2 6 6 C 1.50700 * 126.34686 * 359.97438 * 5 4 3 7 7 H 1.09009 * 109.47161 * 359.71791 * 6 5 4 8 8 C 1.53001 * 109.47413 * 239.71848 * 6 5 4 9 9 C 1.52996 * 109.47144 * 119.71515 * 6 5 4 10 10 C 1.50702 * 109.47159 * 185.00130 * 9 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 6 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 N 1.30287 * 107.30998 * 179.73346 * 5 4 3 19 19 N 1.28534 * 110.05227 * 0.26117 * 18 5 4 20 20 C 1.31220 * 109.85998 * 359.97438 * 19 18 5 21 21 N 1.38576 * 126.47164 * 180.02562 * 20 19 18 22 22 C 1.47449 * 110.99696 * 239.85085 * 21 20 19 23 23 C 1.54319 * 107.23349 * 123.26004 * 22 21 20 24 24 C 1.55135 * 103.01978 * 22.28236 * 23 22 21 25 25 H 1.09005 * 110.99413 * 82.43588 * 24 23 22 26 26 C 1.50697 * 110.99069 * 206.21984 * 24 23 22 27 27 O 1.20823 * 120.00440 * 118.54664 * 26 24 23 28 28 O 1.34234 * 119.99776 * 298.54273 * 26 24 23 29 29 C 1.47844 * 111.00372 * 0.69099 * 21 20 19 30 30 H 1.08001 * 120.00090 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99727 * 359.97438 * 1 2 3 32 32 H 1.07991 * 120.00006 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47359 * 5.00477 * 3 2 1 34 34 H 1.08998 * 109.47174 * 244.99881 * 3 2 1 35 35 H 1.09001 * 109.46849 * 179.97438 * 8 6 5 36 36 H 1.08994 * 109.47016 * 299.99628 * 8 6 5 37 37 H 1.09001 * 109.46786 * 60.00014 * 8 6 5 38 38 H 1.09004 * 109.47066 * 65.00333 * 9 6 5 39 39 H 1.08994 * 109.47405 * 305.00163 * 9 6 5 40 40 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 41 41 H 1.09005 * 109.88570 * 242.66654 * 22 21 20 42 42 H 1.08998 * 109.89087 * 3.68843 * 22 21 20 43 43 H 1.09004 * 110.70331 * 140.66344 * 23 22 21 44 44 H 1.08993 * 110.70434 * 263.89851 * 23 22 21 45 45 H 0.96699 * 116.99763 * 180.02562 * 28 26 24 46 46 H 1.09001 * 110.37149 * 332.47207 * 29 21 20 47 47 H 1.08997 * 110.37117 * 94.80836 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.2913 0.9006 1.1438 6 6 5.0441 0.3006 -0.0157 7 1 4.3911 0.2527 -0.8872 8 6 5.5076 -1.1103 0.3524 9 6 6.2615 1.1695 -0.3378 10 6 6.9445 0.6395 -1.5721 11 1 6.5496 -0.2299 -2.0767 12 6 8.0701 1.2683 -2.0609 13 7 8.5508 2.3272 -1.4467 14 14 8.9123 0.6159 -3.5953 15 1 8.3299 1.2688 -4.7952 16 1 10.3656 0.9130 -3.5266 17 1 8.7110 -0.8527 -3.6841 18 7 4.7578 1.1092 2.3422 19 7 3.8485 1.6339 3.0839 20 6 2.7443 1.7900 2.3924 21 7 1.5519 2.3242 2.8539 22 6 0.4541 1.3469 2.7354 23 6 -0.1498 1.1647 4.1437 24 6 0.2651 2.4692 4.8735 25 1 -0.4205 3.2833 4.6382 26 6 0.3495 2.2515 6.3622 27 8 1.4007 2.4081 6.9371 28 8 -0.7431 1.8837 7.0497 29 6 1.6673 2.7329 4.2701 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8500 -0.9352 -0.0004 33 1 1.3586 2.1317 0.0896 34 1 2.6213 1.4027 -0.9314 35 1 6.0517 -1.5444 -0.4865 36 1 6.1606 -1.0625 1.2237 37 1 4.6402 -1.7293 0.5818 38 1 6.9571 1.1456 0.5010 39 1 5.9391 2.1958 -0.5133 40 1 9.3428 2.7693 -1.7904 41 1 -0.3063 1.7247 2.0518 42 1 0.8419 0.3962 2.3696 43 1 -1.2354 1.0819 4.0897 44 1 0.2801 0.2933 4.6375 45 1 -0.6399 1.7563 8.0027 46 1 2.4191 2.1297 4.7790 47 1 1.9177 3.7914 4.3403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588470995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:22 Heat of formation + Delta-G solvation = 15.747918 kcal Electronic energy + Delta-G solvation = -29475.171219 eV Core-core repulsion = 25467.119028 eV Total energy + Delta-G solvation = -4008.052191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.71525 -40.85807 -38.89442 -36.48366 -36.26935 -35.21055 -33.03490 -32.61232 -31.89025 -29.73418 -28.21920 -26.94298 -26.78260 -24.65296 -24.11705 -22.56338 -22.04398 -20.83112 -20.57347 -20.24961 -19.01026 -18.43349 -17.67219 -17.05427 -16.68599 -16.30295 -15.91249 -15.59253 -15.35979 -14.90472 -14.54780 -14.23901 -13.89338 -13.78143 -13.71261 -13.33514 -13.20922 -12.73032 -12.65072 -12.31702 -12.21208 -11.92898 -11.77321 -11.75508 -11.73280 -11.45460 -11.25257 -10.98850 -10.94033 -10.81593 -10.69542 -10.47538 -10.36536 -9.99736 -9.88926 -9.77136 -9.69524 -9.25485 -9.10553 -8.35993 -7.97081 -5.99343 -4.03179 1.68229 1.82820 2.10650 2.39105 2.78409 3.28808 3.31326 3.38475 3.40623 3.69160 3.97203 4.01889 4.44202 4.46232 4.51073 4.60256 4.75875 4.83259 4.93550 4.98208 5.00974 5.18778 5.29916 5.32067 5.35983 5.37628 5.49085 5.52032 5.54429 5.65877 5.78874 6.03304 6.06898 6.11902 6.13870 6.20442 6.23287 6.34452 6.49657 6.69710 6.78389 6.90134 7.04450 7.37771 7.51867 7.63855 7.79873 8.00069 8.35545 9.02476 9.23378 9.60278 11.11675 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.002775 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.981435 B =10086.257870 C =10963.232897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.174 4.174 3 C 0.134 3.866 4 N -0.478 5.478 5 C 0.217 3.783 6 C -0.001 4.001 7 H 0.072 0.928 8 C -0.125 4.125 9 C 0.038 3.962 10 C -0.521 4.521 11 H 0.058 0.942 12 C 0.059 3.941 13 N -0.890 5.890 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 N -0.282 5.282 19 N -0.318 5.318 20 C 0.328 3.672 21 N -0.440 5.440 22 C 0.038 3.962 23 C -0.125 4.125 24 C -0.094 4.094 25 H 0.127 0.873 26 C 0.489 3.511 27 O -0.501 6.501 28 O -0.516 6.516 29 C 0.070 3.930 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.030 0.970 38 H 0.032 0.968 39 H 0.014 0.986 40 H 0.261 0.739 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.412 0.588 46 H 0.096 0.904 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.165 -2.899 8.993 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.192 4.192 3 C 0.011 3.989 4 N -0.173 5.173 5 C -0.051 4.051 6 C -0.022 4.022 7 H 0.090 0.910 8 C -0.183 4.183 9 C 0.000 4.000 10 C -0.559 4.559 11 H 0.076 0.924 12 C -0.143 4.143 13 N -0.528 5.528 14 Si 0.719 3.281 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.198 1.198 18 N -0.119 5.119 19 N -0.162 5.162 20 C -0.029 4.029 21 N -0.164 5.164 22 C -0.089 4.089 23 C -0.163 4.163 24 C -0.114 4.114 25 H 0.145 0.855 26 C 0.329 3.671 27 O -0.388 6.388 28 O -0.328 6.328 29 C -0.057 4.057 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.136 0.864 33 H 0.118 0.882 34 H 0.129 0.871 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.271 0.729 46 H 0.114 0.886 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -23.902 -2.174 9.594 25.847 hybrid contribution -0.253 -0.776 -0.949 1.252 sum -24.155 -2.950 8.644 25.824 Atomic orbital electron populations 1.23960 0.95428 1.02465 0.98877 1.23235 0.96368 0.98522 1.01122 1.20960 0.92086 0.96851 0.88958 1.46229 1.12181 1.49210 1.09662 1.25621 0.81043 0.99980 0.98427 1.19986 0.97281 0.96354 0.88582 0.91004 1.21668 0.99792 0.93979 1.02855 1.19115 0.90018 0.93535 0.97363 1.21132 1.11065 1.13145 1.10545 0.92362 1.25008 0.97159 0.94970 0.97150 1.69986 1.23122 1.19933 1.39776 0.86608 0.78854 0.79251 0.83354 1.20772 1.21223 1.19821 1.74031 1.21787 1.15571 1.00524 1.74529 0.97545 1.19129 1.25025 1.22468 0.94841 1.01659 0.83889 1.60292 1.00178 1.34915 1.21015 1.23268 0.93055 0.95129 0.97490 1.22761 1.02679 0.95990 0.94889 1.22130 1.00682 1.01370 0.87214 0.85489 1.23000 0.80985 0.72631 0.90440 1.90799 1.30427 1.46622 1.70931 1.84510 1.39832 1.80818 1.27645 1.22942 0.94787 1.03989 0.83963 0.87679 0.87985 0.86417 0.88214 0.87132 0.90656 0.92041 0.95129 0.94935 0.96771 0.92909 0.88845 0.90825 0.88591 0.90441 0.72944 0.88561 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 12.41 29.01 0.36 -0.79 16 2 C -0.17 -1.64 8.30 -36.02 -0.30 -1.94 16 3 C 0.13 1.58 5.66 -5.19 -0.03 1.55 16 4 N -0.48 -7.74 2.74 -115.37 -0.32 -8.06 16 5 C 0.22 4.31 6.58 -154.03 -1.01 3.29 16 6 C 0.00 -0.02 2.70 -91.77 -0.25 -0.27 16 7 H 0.07 1.32 6.95 -51.92 -0.36 0.96 16 8 C -0.12 -2.34 8.99 37.16 0.33 -2.01 16 9 C 0.04 0.97 4.43 -27.88 -0.12 0.85 16 10 C -0.52 -14.09 8.41 -34.44 -0.29 -14.38 16 11 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 14 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 18 N -0.28 -6.31 12.18 32.99 0.40 -5.90 16 19 N -0.32 -6.52 10.72 30.32 0.32 -6.20 16 20 C 0.33 5.47 6.85 -318.87 -2.18 3.28 16 21 N -0.44 -5.49 5.22 -171.30 -0.89 -6.39 16 22 C 0.04 0.33 5.06 -2.83 -0.01 0.32 16 23 C -0.12 -0.90 6.39 -24.91 -0.16 -1.06 16 24 C -0.09 -0.77 3.54 -89.64 -0.32 -1.09 16 25 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 26 C 0.49 4.54 7.64 36.00 0.27 4.82 16 27 O -0.50 -6.65 16.56 -18.75 -0.31 -6.96 16 28 O -0.52 -3.25 13.41 -39.27 -0.53 -3.78 16 29 C 0.07 0.84 5.56 -2.30 -0.01 0.83 16 30 H 0.10 0.59 8.06 -52.49 -0.42 0.17 16 31 H 0.10 0.56 7.32 -52.48 -0.38 0.17 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.10 1.00 7.79 -51.93 -0.40 0.59 16 34 H 0.11 1.33 7.23 -51.93 -0.38 0.96 16 35 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.09 0.62 7.23 -51.93 -0.38 0.24 16 42 H 0.07 0.75 5.34 -51.93 -0.28 0.47 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16 45 H 0.41 1.03 9.10 45.56 0.41 1.45 16 46 H 0.10 1.47 6.28 -51.93 -0.33 1.14 16 47 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -36.19 383.63 -9.82 -46.02 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.18 Total: 0.37 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -3.82 Total: -5.03 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.25 Total: -52.61 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.84 Total: -10.74 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.19 -9.82 -46.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588470995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.763 kcal (2) G-P(sol) polarization free energy of solvation -36.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds