Wall clock time and date at job start Tue Mar 31 2020 18:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50705 * 119.99734 * 2 1 4 4 N 1.46502 * 109.46691 * 125.00333 * 3 2 1 5 5 C 1.36733 * 127.14060 * 90.00104 * 4 3 2 6 6 C 1.50700 * 126.34686 * 359.97438 * 5 4 3 7 7 H 1.09009 * 109.47161 * 359.71791 * 6 5 4 8 8 C 1.53001 * 109.47413 * 239.71848 * 6 5 4 9 9 C 1.52996 * 109.47144 * 119.71515 * 6 5 4 10 10 C 1.50702 * 109.47159 * 185.00130 * 9 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 6 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 N 1.30287 * 107.30998 * 179.73346 * 5 4 3 19 19 N 1.28534 * 110.05227 * 0.26117 * 18 5 4 20 20 C 1.31220 * 109.85998 * 359.97438 * 19 18 5 21 21 N 1.38576 * 126.47164 * 180.02562 * 20 19 18 22 22 C 1.47449 * 110.99696 * 239.85085 * 21 20 19 23 23 C 1.54319 * 107.23349 * 123.26004 * 22 21 20 24 24 C 1.55135 * 103.01978 * 22.28236 * 23 22 21 25 25 H 1.09005 * 110.99413 * 82.43588 * 24 23 22 26 26 C 1.50697 * 110.99069 * 206.21984 * 24 23 22 27 27 O 1.20823 * 120.00440 * 118.54664 * 26 24 23 28 28 O 1.34234 * 119.99776 * 298.54273 * 26 24 23 29 29 C 1.47844 * 111.00372 * 0.69099 * 21 20 19 30 30 H 1.08001 * 120.00090 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99727 * 359.97438 * 1 2 3 32 32 H 1.07991 * 120.00006 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47359 * 5.00477 * 3 2 1 34 34 H 1.08998 * 109.47174 * 244.99881 * 3 2 1 35 35 H 1.09001 * 109.46849 * 179.97438 * 8 6 5 36 36 H 1.08994 * 109.47016 * 299.99628 * 8 6 5 37 37 H 1.09001 * 109.46786 * 60.00014 * 8 6 5 38 38 H 1.09004 * 109.47066 * 65.00333 * 9 6 5 39 39 H 1.08994 * 109.47405 * 305.00163 * 9 6 5 40 40 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 41 41 H 1.09005 * 109.88570 * 242.66654 * 22 21 20 42 42 H 1.08998 * 109.89087 * 3.68843 * 22 21 20 43 43 H 1.09004 * 110.70331 * 140.66344 * 23 22 21 44 44 H 1.08993 * 110.70434 * 263.89851 * 23 22 21 45 45 H 0.96699 * 116.99763 * 180.02562 * 28 26 24 46 46 H 1.09001 * 110.37149 * 332.47207 * 29 21 20 47 47 H 1.08997 * 110.37117 * 94.80836 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.2913 0.9006 1.1438 6 6 5.0441 0.3006 -0.0157 7 1 4.3911 0.2527 -0.8872 8 6 5.5076 -1.1103 0.3524 9 6 6.2615 1.1695 -0.3378 10 6 6.9445 0.6395 -1.5721 11 1 6.5496 -0.2299 -2.0767 12 6 8.0701 1.2683 -2.0609 13 7 8.5508 2.3272 -1.4467 14 14 8.9123 0.6159 -3.5953 15 1 8.3299 1.2688 -4.7952 16 1 10.3656 0.9130 -3.5266 17 1 8.7110 -0.8527 -3.6841 18 7 4.7578 1.1092 2.3422 19 7 3.8485 1.6339 3.0839 20 6 2.7443 1.7900 2.3924 21 7 1.5519 2.3242 2.8539 22 6 0.4541 1.3469 2.7354 23 6 -0.1498 1.1647 4.1437 24 6 0.2651 2.4692 4.8735 25 1 -0.4205 3.2833 4.6382 26 6 0.3495 2.2515 6.3622 27 8 1.4007 2.4081 6.9371 28 8 -0.7431 1.8837 7.0497 29 6 1.6673 2.7329 4.2701 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8500 -0.9352 -0.0004 33 1 1.3586 2.1317 0.0896 34 1 2.6213 1.4027 -0.9314 35 1 6.0517 -1.5444 -0.4865 36 1 6.1606 -1.0625 1.2237 37 1 4.6402 -1.7293 0.5818 38 1 6.9571 1.1456 0.5010 39 1 5.9391 2.1958 -0.5133 40 1 9.3428 2.7693 -1.7904 41 1 -0.3063 1.7247 2.0518 42 1 0.8419 0.3962 2.3696 43 1 -1.2354 1.0819 4.0897 44 1 0.2801 0.2933 4.6375 45 1 -0.6399 1.7563 8.0027 46 1 2.4191 2.1297 4.7790 47 1 1.9177 3.7914 4.3403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588470995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:21 Heat of formation + Delta-G solvation = -8.020178 kcal Electronic energy + Delta-G solvation = -29476.201881 eV Core-core repulsion = 25467.119028 eV Total energy + Delta-G solvation = -4009.082853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.08353 -41.62412 -39.77533 -37.40846 -37.15961 -36.83203 -34.42128 -33.93627 -33.18789 -30.57687 -29.68735 -28.76898 -27.75619 -25.93423 -25.53066 -23.79630 -23.34725 -21.75634 -21.51868 -21.13542 -20.35238 -19.20921 -18.69022 -18.51094 -17.85303 -17.62392 -17.00773 -16.52238 -16.35711 -16.30410 -15.91644 -15.49717 -14.98357 -14.74867 -14.63581 -14.58201 -14.32977 -14.23304 -13.65946 -13.49802 -13.41743 -13.02513 -12.94508 -12.83103 -12.73010 -12.63314 -12.48908 -12.42982 -12.37238 -12.26411 -12.01502 -11.94769 -11.59093 -11.51574 -11.45882 -11.18226 -11.11043 -10.66763 -10.55136 -10.41419 -9.32439 -8.16271 -6.28441 0.74692 0.91682 1.12279 1.43152 1.45399 1.50869 1.56298 1.83296 2.00854 2.43615 2.70465 3.15616 3.17601 3.28514 3.48905 3.62021 3.83068 3.90070 3.94382 4.04024 4.13348 4.17547 4.31227 4.38203 4.41682 4.48639 4.53766 4.60240 4.67832 4.72478 4.80901 4.89118 4.91163 5.03450 5.06541 5.08326 5.16633 5.33842 5.43984 5.45101 5.49161 5.57312 5.62325 5.66223 5.70080 5.83344 6.14375 6.20624 6.87540 6.93700 7.40835 7.78550 8.96356 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.002775 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.981435 B =10086.257870 C =10963.232897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.204 4.204 3 C 0.128 3.872 4 N -0.471 5.471 5 C 0.202 3.798 6 C 0.012 3.988 7 H 0.095 0.905 8 C -0.116 4.116 9 C 0.050 3.950 10 C -0.527 4.527 11 H 0.078 0.922 12 C -0.004 4.004 13 N -0.938 5.938 14 Si 0.968 3.032 15 H -0.271 1.271 16 H -0.290 1.290 17 H -0.256 1.256 18 N -0.329 5.329 19 N -0.367 5.367 20 C 0.348 3.652 21 N -0.433 5.433 22 C 0.033 3.967 23 C -0.115 4.115 24 C -0.083 4.083 25 H 0.163 0.837 26 C 0.495 3.505 27 O -0.552 6.552 28 O -0.502 6.502 29 C 0.063 3.937 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.062 0.938 38 H -0.013 1.013 39 H -0.023 1.023 40 H 0.261 0.739 41 H 0.131 0.869 42 H 0.063 0.937 43 H 0.137 0.863 44 H 0.063 0.937 45 H 0.429 0.571 46 H 0.058 0.942 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.760 -4.163 7.413 30.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.223 4.223 3 C 0.007 3.993 4 N -0.165 5.165 5 C -0.068 4.068 6 C -0.009 4.009 7 H 0.113 0.887 8 C -0.174 4.174 9 C 0.012 3.988 10 C -0.565 4.565 11 H 0.096 0.904 12 C -0.201 4.201 13 N -0.578 5.578 14 Si 0.792 3.208 15 H -0.196 1.196 16 H -0.216 1.216 17 H -0.179 1.179 18 N -0.167 5.167 19 N -0.210 5.210 20 C -0.010 4.010 21 N -0.158 5.158 22 C -0.092 4.092 23 C -0.153 4.153 24 C -0.102 4.102 25 H 0.181 0.819 26 C 0.338 3.662 27 O -0.442 6.442 28 O -0.315 6.315 29 C -0.064 4.064 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.123 0.877 33 H 0.140 0.860 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.006 0.994 39 H -0.004 1.004 40 H 0.070 0.930 41 H 0.149 0.851 42 H 0.082 0.918 43 H 0.155 0.845 44 H 0.081 0.919 45 H 0.291 0.709 46 H 0.076 0.924 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -28.571 -3.469 8.011 29.875 hybrid contribution 0.978 -0.316 -0.364 1.091 sum -27.593 -3.785 7.647 28.882 Atomic orbital electron populations 1.24272 0.94204 1.04395 0.93977 1.22956 0.97223 0.96580 1.05525 1.21322 0.91712 0.99352 0.86898 1.46390 1.11511 1.48038 1.10564 1.25316 0.82780 1.01030 0.97640 1.19713 0.95395 0.95945 0.89851 0.88712 1.21570 1.00618 0.93494 1.01742 1.18854 0.91518 0.92803 0.95652 1.21567 1.11011 1.13360 1.10552 0.90427 1.26052 0.98141 0.95107 1.00842 1.70168 1.23841 1.21809 1.42025 0.85400 0.77073 0.79435 0.78860 1.19639 1.21576 1.17929 1.73903 1.23674 1.17066 1.02028 1.74426 0.98932 1.21514 1.26176 1.22897 0.95300 0.99009 0.83749 1.60498 0.99008 1.35294 1.20968 1.23527 0.92168 0.94014 0.99510 1.22793 1.04869 0.94552 0.93066 1.22120 0.98431 1.03270 0.86394 0.81934 1.23176 0.80648 0.71394 0.90944 1.90801 1.32397 1.49044 1.71985 1.84459 1.38079 1.79834 1.29161 1.22889 0.96766 1.02914 0.83801 0.85791 0.85764 0.87728 0.86004 0.88013 0.90665 0.94346 0.91936 0.99425 1.00426 0.92987 0.85128 0.91824 0.84454 0.91864 0.70885 0.92351 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 12.41 67.78 0.84 -0.30 16 2 C -0.20 -3.31 8.30 25.65 0.21 -3.10 16 3 C 0.13 2.81 5.66 85.63 0.48 3.29 16 4 N -0.47 -15.41 2.74 -518.91 -1.42 -16.83 16 5 C 0.20 8.42 6.58 137.64 0.91 9.33 16 6 C 0.01 0.50 2.70 -11.54 -0.03 0.47 16 7 H 0.09 3.50 6.95 -2.38 -0.02 3.48 16 8 C -0.12 -4.44 8.99 71.98 0.65 -3.80 16 9 C 0.05 2.73 4.43 29.85 0.13 2.86 16 10 C -0.53 -29.17 8.41 25.60 0.22 -28.95 16 11 H 0.08 3.91 7.06 -2.91 -0.02 3.89 16 12 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 13 N -0.94 -58.97 13.29 21.45 0.28 -58.69 16 14 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 17 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 18 N -0.33 -15.86 12.18 -49.54 -0.60 -16.46 16 19 N -0.37 -16.05 10.72 -58.00 -0.62 -16.67 16 20 C 0.35 11.83 6.85 260.11 1.78 13.61 16 21 N -0.43 -10.26 5.22 -695.87 -3.63 -13.89 16 22 C 0.03 0.47 5.06 86.65 0.44 0.91 16 23 C -0.11 -1.20 6.39 31.77 0.20 -1.00 16 24 C -0.08 -1.14 3.54 -10.16 -0.04 -1.17 16 25 H 0.16 1.14 8.14 -2.38 -0.02 1.12 16 26 C 0.50 8.49 7.64 71.23 0.54 9.03 16 27 O -0.55 -14.98 16.56 21.97 0.36 -14.62 16 28 O -0.50 -4.90 13.41 -51.45 -0.69 -5.59 16 29 C 0.06 1.52 5.56 86.77 0.48 2.01 16 30 H 0.12 0.71 8.06 -2.91 -0.02 0.68 16 31 H 0.12 0.56 7.32 -2.91 -0.02 0.54 16 32 H 0.10 1.99 8.06 -2.92 -0.02 1.97 16 33 H 0.12 2.07 7.79 -2.39 -0.02 2.05 16 34 H 0.10 2.38 7.23 -2.39 -0.02 2.36 16 35 H 0.07 2.84 6.95 -2.39 -0.02 2.82 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 39 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 40 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 41 H 0.13 0.93 7.23 -2.38 -0.02 0.91 16 42 H 0.06 1.10 5.34 -2.39 -0.01 1.09 16 43 H 0.14 0.41 8.14 -2.38 -0.02 0.39 16 44 H 0.06 0.88 8.03 -2.39 -0.02 0.86 16 45 H 0.43 1.14 9.10 -74.06 -0.67 0.47 16 46 H 0.06 1.90 6.28 -2.39 -0.01 1.89 16 47 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -87.46 383.63 3.30 -84.15 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.32 Total: 9.27 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 7.28 Total: 3.42 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -6.00 Total: -122.54 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.33 Total: -20.21 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -87.46 3.30 -84.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588470995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.132 kcal (2) G-P(sol) polarization free energy of solvation -87.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds