Wall clock time and date at job start Tue Mar 31 2020 18:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47559 * 2 1 4 4 C 1.53006 * 109.46976 * 119.99919 * 2 1 3 5 5 N 1.46504 * 109.47093 * 174.99780 * 4 2 1 6 6 C 1.34767 * 120.00190 * 179.97438 * 5 4 2 7 7 O 1.21698 * 119.99722 * 0.02562 * 6 5 4 8 8 C 1.46684 * 120.00445 * 179.97438 * 6 5 4 9 9 C 1.37751 * 126.22978 * 180.02562 * 8 6 5 10 10 C 1.40102 * 107.10941 * 179.97438 * 9 8 6 11 11 C 1.35330 * 107.92569 * 359.74972 * 10 9 8 12 12 N 1.35999 * 108.67999 * 0.40963 * 11 10 9 13 13 H 0.97001 * 125.63473 * 179.85874 * 12 11 10 14 14 C 1.51512 * 110.12006 * 179.77328 * 11 10 9 15 15 C 1.54400 * 105.08935 * 343.36904 * 14 11 10 16 16 C 1.51350 * 141.74293 * 179.97438 * 10 9 8 17 17 N 1.46905 * 109.46892 * 239.99568 * 2 1 3 18 18 C 1.46897 * 110.99696 * 85.00690 * 17 2 1 19 19 C 1.50704 * 109.46806 * 180.02562 * 18 17 2 20 20 O 1.21292 * 120.00109 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99860 * 179.97438 * 19 18 17 22 22 C 1.37088 * 119.99877 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00246 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99914 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99863 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99926 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47164 * 0.02562 * 26 24 22 28 28 H 1.48496 * 109.46854 * 120.00500 * 26 24 22 29 29 H 1.48503 * 109.46995 * 240.00046 * 26 24 22 30 30 H 1.09000 * 109.47328 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46991 * 300.00561 * 1 2 3 32 32 H 1.08995 * 109.47325 * 60.00136 * 1 2 3 33 33 H 1.09002 * 109.47301 * 55.00092 * 4 2 1 34 34 H 1.08997 * 109.47203 * 294.99352 * 4 2 1 35 35 H 0.97006 * 119.99691 * 359.97438 * 5 4 2 36 36 H 1.08000 * 126.44476 * 0.02562 * 9 8 6 37 37 H 1.09000 * 110.47204 * 224.37367 * 14 11 10 38 38 H 1.09002 * 110.21364 * 102.23089 * 14 11 10 39 39 H 1.09000 * 110.92078 * 267.45687 * 15 14 11 40 40 H 1.09000 * 110.95304 * 143.83553 * 15 14 11 41 41 H 1.09003 * 110.33875 * 315.87475 * 16 10 9 42 42 H 1.08998 * 110.34046 * 78.00887 * 16 10 9 43 43 H 1.00905 * 110.99623 * 208.95351 * 17 2 1 44 44 H 1.09001 * 109.46816 * 299.99553 * 18 17 2 45 45 H 1.08995 * 109.47597 * 59.99771 * 18 17 2 46 46 H 0.97003 * 119.99822 * 359.97438 * 21 19 18 47 47 H 0.97003 * 119.99804 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.1730 -1.4283 2.1912 7 8 3.5678 -1.8848 3.1432 8 6 5.6349 -1.5342 2.1322 9 6 6.4475 -2.1200 3.0777 10 6 7.7661 -1.9984 2.6202 11 6 7.7360 -1.3597 1.4275 12 7 6.4433 -1.0670 1.1227 13 1 6.1411 -0.6082 0.3232 14 6 9.1424 -1.1962 0.8881 15 6 10.0682 -1.4388 2.0997 16 6 9.1917 -2.3369 2.9995 17 7 2.0196 -0.6926 -1.1994 18 6 2.0825 0.2225 -2.3468 19 6 2.5873 -0.5221 -3.5560 20 8 2.8676 -1.6991 -3.4701 21 7 2.7273 0.1199 -4.7328 22 6 3.1870 -0.5572 -5.8325 23 1 3.4366 -1.6052 -5.7561 24 6 3.3309 0.1046 -7.0459 25 7 3.0268 1.3796 -7.1390 26 14 3.9580 -0.8180 -8.5443 27 1 4.2276 -2.2317 -8.1782 28 1 2.9336 -0.7718 -9.6184 29 1 5.2108 -0.1837 -9.0276 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6053 -1.7198 1.2952 34 1 1.7517 -0.1583 2.1370 35 1 3.9824 -0.4629 0.4316 36 1 6.1281 -2.5863 3.9980 37 1 9.2861 -0.1888 0.4975 38 1 9.3356 -1.9346 0.1100 39 1 10.3074 -0.5009 2.6008 40 1 10.9770 -1.9593 1.7976 41 1 9.3686 -2.1081 4.0505 42 1 9.3966 -3.3891 2.8020 43 1 2.9173 -1.1206 -1.0287 44 1 1.0871 0.6162 -2.5525 45 1 2.7589 1.0460 -2.1182 46 1 2.5028 1.0611 -4.8015 47 1 3.1275 1.8417 -7.9859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714291663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:10 Heat of formation + Delta-G solvation = -24.054015 kcal Electronic energy + Delta-G solvation = -28022.799296 eV Core-core repulsion = 24013.021163 eV Total energy + Delta-G solvation = -4009.778132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.84511 -39.64320 -38.47037 -37.03665 -36.21098 -34.23350 -33.81090 -31.42217 -31.21898 -30.95003 -28.60107 -27.49140 -26.74339 -25.99553 -24.06372 -22.82849 -21.30463 -20.75789 -20.19267 -19.42364 -19.26340 -18.42280 -17.95429 -16.56166 -16.16871 -16.10376 -15.86466 -15.57273 -15.30755 -14.88320 -14.54412 -14.14823 -13.99965 -13.71900 -13.68632 -13.51246 -13.25563 -13.00447 -12.88897 -12.63105 -12.55173 -12.08273 -11.97221 -11.82498 -11.73549 -11.62644 -11.49219 -11.44941 -11.24997 -11.15976 -10.94329 -10.40530 -10.30068 -10.27776 -9.60257 -9.36437 -8.98739 -8.57209 -8.22782 -8.14651 -8.04981 -6.49865 -3.90924 1.27664 2.45538 2.62381 2.87891 3.10292 3.21741 3.24838 3.28755 3.80074 3.95844 4.19314 4.22611 4.38349 4.53385 4.68380 4.71112 4.89382 4.93081 5.09419 5.11480 5.16737 5.21061 5.30327 5.41457 5.44729 5.46347 5.59003 5.59467 5.65613 5.69774 5.71472 5.82810 5.87092 5.91100 5.92070 5.98505 6.09192 6.16112 6.29263 6.55219 6.77797 7.05399 7.11632 7.27134 7.45687 7.47793 7.96405 7.97764 8.52088 9.09686 9.45023 9.96001 10.67732 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008958 B = 0.002802 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.000779 B = 9990.006948 C =12657.241839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.120 3.880 5 N -0.732 5.732 6 C 0.595 3.405 7 O -0.528 6.528 8 C -0.049 4.049 9 C -0.083 4.083 10 C -0.199 4.199 11 C 0.024 3.976 12 N -0.521 5.521 13 H 0.414 0.586 14 C -0.045 4.045 15 C -0.115 4.115 16 C -0.049 4.049 17 N -0.663 5.663 18 C 0.049 3.951 19 C 0.438 3.562 20 O -0.582 6.582 21 N -0.562 5.562 22 C -0.300 4.300 23 H 0.104 0.896 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.393 0.607 36 H 0.146 0.854 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.345 0.655 44 H 0.089 0.911 45 H 0.042 0.958 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.530 1.276 18.268 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.040 4.040 3 H 0.067 0.933 4 C -0.004 4.004 5 N -0.385 5.385 6 C 0.383 3.617 7 O -0.405 6.405 8 C -0.162 4.162 9 C -0.109 4.109 10 C -0.205 4.205 11 C -0.094 4.094 12 N -0.116 5.116 13 H 0.251 0.749 14 C -0.083 4.083 15 C -0.152 4.152 16 C -0.087 4.087 17 N -0.298 5.298 18 C -0.084 4.084 19 C 0.223 3.777 20 O -0.467 6.467 21 N -0.198 5.198 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.227 0.773 36 H 0.164 0.836 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.166 0.834 44 H 0.107 0.893 45 H 0.060 0.940 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.534 0.105 18.561 20.032 hybrid contribution 0.796 1.263 -1.630 2.211 sum 8.330 1.368 16.931 18.918 Atomic orbital electron populations 1.21733 0.93159 1.03088 1.01637 1.21835 0.97349 0.95851 0.88922 0.93344 1.21654 0.78546 1.02365 0.97812 1.45929 1.08530 1.60552 1.23443 1.16936 0.84670 0.77737 0.82406 1.90842 1.68336 1.48118 1.33179 1.20178 0.90283 1.12419 0.93274 1.20655 0.90120 1.01139 0.99023 1.20307 0.94858 1.07667 0.97638 1.21298 0.86449 1.03348 0.98351 1.41361 1.05032 1.46108 1.19126 0.74927 1.20752 0.86209 1.02779 0.98569 1.22327 0.97447 1.00377 0.95098 1.20471 0.88896 0.99564 0.99740 1.60118 1.34659 1.32310 1.02751 1.21772 1.01614 0.93711 0.91298 1.19789 0.85210 0.88228 0.84481 1.90540 1.55333 1.16047 1.84741 1.41873 1.57584 1.12438 1.07951 1.19752 1.39960 0.96479 0.86774 0.87856 1.25274 0.97571 0.95782 0.99262 1.69617 1.48522 1.08886 1.27167 0.85803 0.78267 0.79646 0.80668 1.19178 1.20659 1.20722 0.91404 0.92379 0.91923 0.89957 0.90470 0.77330 0.83577 0.90651 0.89623 0.90701 0.90032 0.91172 0.90790 0.83393 0.89260 0.93964 0.77468 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.41 37.16 0.35 -1.11 16 2 C 0.07 0.80 2.81 -67.71 -0.19 0.61 16 3 H 0.05 0.50 7.80 -51.93 -0.40 0.10 16 4 C 0.12 1.36 5.31 -4.04 -0.02 1.34 16 5 N -0.73 -8.46 4.98 -61.61 -0.31 -8.77 16 6 C 0.59 8.14 7.79 -12.85 -0.10 8.04 16 7 O -0.53 -8.80 16.88 5.19 0.09 -8.71 16 8 C -0.05 -0.62 7.05 -82.09 -0.58 -1.20 16 9 C -0.08 -1.03 10.66 -39.06 -0.42 -1.45 16 10 C -0.20 -2.17 6.89 -104.64 -0.72 -2.89 16 11 C 0.02 0.25 8.01 -81.38 -0.65 -0.40 16 12 N -0.52 -5.54 6.00 -5.43 -0.03 -5.58 16 13 H 0.41 3.60 8.18 -40.82 -0.33 3.27 16 14 C -0.04 -0.34 6.78 -26.75 -0.18 -0.52 16 15 C -0.11 -0.70 7.12 -25.25 -0.18 -0.88 16 16 C -0.05 -0.38 6.79 -26.82 -0.18 -0.57 16 17 N -0.66 -9.98 5.93 -107.99 -0.64 -10.62 16 18 C 0.05 0.80 5.97 -4.98 -0.03 0.77 16 19 C 0.44 9.90 7.82 -10.98 -0.09 9.81 16 20 O -0.58 -15.37 15.78 5.55 0.09 -15.28 16 21 N -0.56 -13.74 5.29 -10.96 -0.06 -13.80 16 22 C -0.30 -8.17 9.68 -14.94 -0.14 -8.31 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -23.93 13.05 55.50 0.72 -23.20 16 26 Si 0.93 20.61 29.55 -169.99 -5.02 15.58 16 27 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.39 3.99 6.50 -40.82 -0.27 3.73 16 36 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.35 5.35 6.41 -39.29 -0.25 5.10 16 44 H 0.09 1.37 7.44 -51.93 -0.39 0.98 16 45 H 0.04 0.60 8.05 -51.93 -0.42 0.18 16 46 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 47 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -33.64 391.04 -9.43 -43.07 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -6.93 Total: 17.66 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -3.23 Total: 3.74 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.31 Total: -61.96 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: 0.18 Total: -23.99 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.64 -9.43 -43.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714291663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.017 kcal (2) G-P(sol) polarization free energy of solvation -33.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds