Wall clock time and date at job start Tue Mar 31 2020 17:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47564 * 2 1 4 4 C 1.53003 * 109.46912 * 239.99360 * 2 1 3 5 5 N 1.46505 * 109.46700 * 185.00254 * 4 2 1 6 6 C 1.46502 * 119.99897 * 270.00019 * 5 4 2 7 7 C 1.36934 * 120.00023 * 90.00700 * 5 4 2 8 8 H 1.08001 * 120.00393 * 22.33065 * 7 5 4 9 9 C 1.38813 * 119.99552 * 202.33933 * 7 5 4 10 10 N 1.31611 * 120.00414 * 11.35973 * 9 7 5 11 11 Si 1.86805 * 119.99709 * 191.36312 * 9 7 5 12 12 H 1.48499 * 109.46945 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47332 * 119.99742 * 11 9 7 14 14 H 1.48506 * 109.46951 * 239.99615 * 11 9 7 15 15 N 1.46503 * 109.47017 * 119.99579 * 2 1 3 16 16 C 1.34774 * 120.00092 * 274.99833 * 15 2 1 17 17 O 1.21547 * 119.99806 * 359.97438 * 16 15 2 18 18 C 1.47906 * 120.00015 * 180.02562 * 16 15 2 19 19 C 1.39429 * 120.02614 * 179.97438 * 18 16 15 20 20 N 1.32049 * 119.95939 * 179.78880 * 19 18 16 21 21 C 1.32611 * 120.00596 * 0.48619 * 20 19 18 22 22 O 1.35483 * 119.96984 * 179.76580 * 21 20 19 23 23 C 1.42901 * 117.00543 * 359.72277 * 22 21 20 24 24 C 1.52998 * 109.47121 * 179.97438 * 23 22 21 25 25 C 1.53007 * 117.51557 * 116.29014 * 24 23 22 26 26 C 1.52996 * 60.00097 * 107.47729 * 25 24 23 27 27 C 1.39579 * 120.05339 * 359.48875 * 21 20 19 28 28 N 1.31561 * 120.04091 * 0.28154 * 27 21 20 29 29 H 1.09001 * 109.47074 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46828 * 300.00588 * 1 2 3 31 31 H 1.08993 * 109.46913 * 60.00252 * 1 2 3 32 32 H 1.08999 * 109.47247 * 305.00079 * 4 2 1 33 33 H 1.09000 * 109.46956 * 65.00146 * 4 2 1 34 34 H 1.08992 * 109.47398 * 94.22744 * 6 5 4 35 35 H 1.08996 * 109.47139 * 214.22950 * 6 5 4 36 36 H 1.09002 * 109.47000 * 334.22445 * 6 5 4 37 37 H 0.97003 * 120.00492 * 180.02562 * 10 9 7 38 38 H 0.96997 * 119.99860 * 94.99811 * 15 2 1 39 39 H 1.08005 * 120.02080 * 0.02562 * 19 18 16 40 40 H 1.09001 * 109.47147 * 60.00167 * 23 22 21 41 41 H 1.08991 * 109.47086 * 300.00353 * 23 22 21 42 42 H 1.08996 * 115.55364 * 330.58663 * 24 23 22 43 43 H 1.09001 * 117.49781 * 214.97501 * 25 24 23 44 44 H 1.09004 * 117.49383 * 359.97438 * 25 24 23 45 45 H 1.09001 * 117.50060 * 252.50708 * 26 25 24 46 46 H 1.09004 * 117.49833 * 107.48908 * 26 25 24 47 47 H 1.08001 * 119.98384 * 180.25308 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5001 -0.8266 -1.1904 6 6 4.3344 0.2338 -1.7612 7 6 4.0850 -1.9160 -0.6022 8 1 3.5338 -2.8401 -0.5084 9 6 5.3862 -1.8327 -0.1261 10 7 5.9794 -0.6615 -0.0335 11 14 6.2956 -3.3830 0.3830 12 1 5.4143 -4.5616 0.1844 13 1 7.5189 -3.5339 -0.4452 14 1 6.6763 -3.2858 1.8152 15 7 2.0184 -0.6905 1.1963 16 6 2.1471 -0.0181 2.3572 17 8 1.8585 1.1613 2.4115 18 6 2.6406 -0.7152 3.5647 19 6 2.7745 -0.0199 4.7659 20 7 3.2113 -0.6445 5.8442 21 6 3.5315 -1.9299 5.7820 22 8 3.9841 -2.5689 6.8877 23 6 4.0970 -1.7951 8.0838 24 6 4.6194 -2.6807 9.2167 25 6 5.9813 -2.3284 9.8187 26 6 4.7016 -2.0642 10.6147 27 6 3.3971 -2.6264 4.5800 28 7 2.9579 -2.0072 3.5055 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7200 -1.2950 33 1 1.7516 -0.1585 -2.1370 34 1 4.6023 0.9454 -0.9803 35 1 5.2404 -0.2031 -2.1811 36 1 3.7812 0.7481 -2.5471 37 1 6.8889 -0.6032 0.2988 38 1 2.2490 -1.6317 1.1528 39 1 2.5175 1.0280 4.8152 40 1 3.1181 -1.3994 8.3543 41 1 4.7894 -0.9697 7.9185 42 1 4.3580 -3.7365 9.1468 43 1 6.6158 -3.1525 10.1448 44 1 6.5054 -1.4657 9.4073 45 1 4.3838 -1.0277 10.7271 46 1 4.4942 -2.7146 11.4645 47 1 3.6543 -3.6743 4.5316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754330751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:48 Heat of formation + Delta-G solvation = 27.092925 kcal Electronic energy + Delta-G solvation = -29047.797252 eV Core-core repulsion = 25040.237017 eV Total energy + Delta-G solvation = -4007.560235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.31624 -39.36064 -38.52357 -37.10742 -36.26377 -34.27823 -33.84392 -31.55746 -30.91838 -29.80323 -27.98622 -26.15267 -25.57259 -24.59829 -24.57351 -22.76180 -21.96419 -21.06689 -20.77556 -19.71717 -18.70306 -18.07109 -17.37513 -16.60782 -16.54757 -16.00691 -15.39430 -14.98289 -14.89964 -14.73182 -14.53554 -14.35008 -13.86629 -13.64128 -13.49037 -13.09053 -12.94502 -12.81766 -12.21116 -12.07411 -11.92397 -11.81559 -11.76598 -11.41138 -11.37789 -11.26414 -11.08602 -10.88958 -10.83107 -10.67024 -10.39406 -10.32767 -10.24471 -9.99126 -9.80959 -9.77960 -9.07727 -8.74003 -8.53451 -8.24499 -6.74950 -5.70552 -3.16191 0.62486 1.09574 2.57384 3.12516 3.37388 3.41189 3.45208 3.46443 3.65676 3.97563 4.06496 4.27027 4.34060 4.49349 4.50584 4.51535 4.69293 4.89118 5.11422 5.21910 5.26149 5.26884 5.33489 5.38436 5.51304 5.54456 5.57061 5.68031 5.72710 5.76430 5.89974 5.99864 6.07382 6.18695 6.27124 6.47096 6.52179 6.76746 6.89377 6.91437 7.12118 7.25987 7.41281 7.66829 7.75568 7.82932 8.29513 8.39923 8.85293 9.24306 9.88005 10.37070 11.33827 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.003369 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.535923 B = 8309.106877 C = 9839.300541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 H 0.079 0.921 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.164 3.836 7 C -0.252 4.252 8 H 0.068 0.932 9 C 0.010 3.990 10 N -0.901 5.901 11 Si 0.896 3.104 12 H -0.276 1.276 13 H -0.292 1.292 14 H -0.292 1.292 15 N -0.662 5.662 16 C 0.579 3.421 17 O -0.555 6.555 18 C 0.002 3.998 19 C 0.148 3.852 20 N -0.504 5.504 21 C 0.286 3.714 22 O -0.293 6.293 23 C 0.099 3.901 24 C -0.160 4.160 25 C -0.176 4.176 26 C -0.168 4.168 27 C 0.047 3.953 28 N -0.363 5.363 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.027 0.973 35 H 0.044 0.956 36 H -0.004 1.004 37 H 0.250 0.750 38 H 0.414 0.586 39 H 0.184 0.816 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.409 -2.814 14.620 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.007 3.993 3 H 0.097 0.903 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.382 4.382 8 H 0.086 0.914 9 C -0.189 4.189 10 N -0.546 5.546 11 Si 0.726 3.274 12 H -0.201 1.201 13 H -0.219 1.219 14 H -0.219 1.219 15 N -0.310 5.310 16 C 0.362 3.638 17 O -0.435 6.435 18 C -0.137 4.137 19 C -0.011 4.011 20 N -0.233 5.233 21 C 0.103 3.897 22 O -0.198 6.198 23 C 0.023 3.977 24 C -0.178 4.178 25 C -0.213 4.213 26 C -0.205 4.205 27 C -0.120 4.120 28 N -0.080 5.080 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.014 0.986 37 H 0.060 0.940 38 H 0.252 0.748 39 H 0.201 0.799 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.135 0.865 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.348 -2.210 14.681 16.147 hybrid contribution 0.978 -1.010 0.589 1.524 sum -5.369 -3.220 15.270 16.504 Atomic orbital electron populations 1.22157 0.96653 1.01397 1.01640 1.21949 0.91969 0.98502 0.86870 0.90303 1.21201 0.86047 0.97968 0.93458 1.43925 0.98872 1.22694 1.66600 1.20792 0.92970 0.90457 0.93808 1.19110 0.97061 0.89417 1.32571 0.91442 1.24949 0.98676 0.96062 0.99206 1.70083 1.13196 1.21568 1.49707 0.86313 0.79941 0.83264 0.77871 1.20101 1.21865 1.21884 1.45598 1.62658 1.14990 1.07779 1.17335 0.78078 0.85774 0.82584 1.90724 1.52756 1.14936 1.85062 1.22153 1.03656 0.91393 0.96501 1.23471 0.90216 1.01141 0.86241 1.68190 1.15436 1.08129 1.31569 1.21209 0.90936 0.89302 0.88252 1.86198 1.78757 1.37909 1.16899 1.22228 1.01786 0.92777 0.80875 1.22150 1.01672 1.00881 0.93102 1.23123 0.90700 1.03754 1.03710 1.22990 1.01772 1.02212 0.93555 1.22966 1.01321 1.01994 0.85680 1.68460 1.03908 1.08604 1.27053 0.92910 0.92902 0.92089 0.93234 0.92818 0.95439 0.93700 0.98589 0.94008 0.74785 0.79881 0.90840 0.91084 0.86514 0.88349 0.88407 0.88385 0.88154 0.80292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.48 37.16 0.35 -2.05 16 2 C 0.11 2.16 2.88 -67.92 -0.20 1.96 16 3 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 4 C 0.14 2.73 5.36 -4.04 -0.02 2.71 16 5 N -0.60 -14.34 2.82 -181.12 -0.51 -14.85 16 6 C 0.16 4.02 9.01 59.85 0.54 4.56 16 7 C -0.25 -6.50 8.02 -15.06 -0.12 -6.62 16 8 H 0.07 1.70 7.84 -52.49 -0.41 1.29 16 9 C 0.01 0.27 5.13 -17.43 -0.09 0.18 16 10 N -0.90 -25.92 10.59 55.49 0.59 -25.33 16 11 Si 0.90 21.62 29.57 -169.99 -5.03 16.59 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 N -0.66 -13.28 4.48 -54.72 -0.25 -13.52 16 16 C 0.58 11.86 7.77 -12.30 -0.10 11.76 16 17 O -0.56 -12.20 16.00 5.32 0.09 -12.12 16 18 C 0.00 0.05 6.74 -82.88 -0.56 -0.51 16 19 C 0.15 2.42 10.76 -17.01 -0.18 2.24 16 20 N -0.50 -7.74 9.37 -12.76 -0.12 -7.86 16 21 C 0.29 4.27 7.50 -16.72 -0.13 4.14 16 22 O -0.29 -3.83 10.12 -18.14 -0.18 -4.02 16 23 C 0.10 1.06 5.60 37.16 0.21 1.26 16 24 C -0.16 -1.38 6.06 -90.61 -0.55 -1.93 16 25 C -0.18 -1.35 10.18 -26.73 -0.27 -1.62 16 26 C -0.17 -1.15 10.25 -26.73 -0.27 -1.42 16 27 C 0.05 0.73 11.18 -17.17 -0.19 0.53 16 28 N -0.36 -6.56 9.70 -9.49 -0.09 -6.65 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 33 H 0.05 0.94 7.86 -51.93 -0.41 0.53 16 34 H 0.03 0.74 7.42 -51.93 -0.39 0.36 16 35 H 0.04 1.18 7.19 -51.93 -0.37 0.81 16 36 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 37 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.41 8.53 6.74 -40.82 -0.28 8.25 16 39 H 0.18 2.71 7.64 -52.48 -0.40 2.31 16 40 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 41 H 0.07 0.79 7.85 -51.93 -0.41 0.38 16 42 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 0.76 8.03 -51.93 -0.42 0.35 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.18 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 395.37 15.07 5.96 5.96 Total: -1.00 -31.09 395.37 -8.36 -39.45 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.23 Total: 7.15 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: -1.58 Total: 15.20 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: -0.38 Total: -68.21 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.10 Total: -16.13 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.09 -8.36 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754330751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.542 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds