Wall clock time and date at job start Tue Mar 31 2020 17:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47564 * 2 1 4 4 C 1.53003 * 109.46912 * 239.99360 * 2 1 3 5 5 N 1.46505 * 109.46700 * 185.00254 * 4 2 1 6 6 C 1.46502 * 119.99897 * 270.00019 * 5 4 2 7 7 C 1.36934 * 120.00023 * 90.00700 * 5 4 2 8 8 H 1.08001 * 120.00393 * 22.33065 * 7 5 4 9 9 C 1.38813 * 119.99552 * 202.33933 * 7 5 4 10 10 N 1.31611 * 120.00414 * 11.35973 * 9 7 5 11 11 Si 1.86805 * 119.99709 * 191.36312 * 9 7 5 12 12 H 1.48499 * 109.46945 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47332 * 119.99742 * 11 9 7 14 14 H 1.48506 * 109.46951 * 239.99615 * 11 9 7 15 15 N 1.46503 * 109.47017 * 119.99579 * 2 1 3 16 16 C 1.34774 * 120.00092 * 274.99833 * 15 2 1 17 17 O 1.21547 * 119.99806 * 359.97438 * 16 15 2 18 18 C 1.47906 * 120.00015 * 180.02562 * 16 15 2 19 19 C 1.39429 * 120.02614 * 179.97438 * 18 16 15 20 20 N 1.32049 * 119.95939 * 179.78880 * 19 18 16 21 21 C 1.32611 * 120.00596 * 0.48619 * 20 19 18 22 22 O 1.35483 * 119.96984 * 179.76580 * 21 20 19 23 23 C 1.42901 * 117.00543 * 359.72277 * 22 21 20 24 24 C 1.52998 * 109.47121 * 179.97438 * 23 22 21 25 25 C 1.53007 * 117.51557 * 116.29014 * 24 23 22 26 26 C 1.52996 * 60.00097 * 107.47729 * 25 24 23 27 27 C 1.39579 * 120.05339 * 359.48875 * 21 20 19 28 28 N 1.31561 * 120.04091 * 0.28154 * 27 21 20 29 29 H 1.09001 * 109.47074 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46828 * 300.00588 * 1 2 3 31 31 H 1.08993 * 109.46913 * 60.00252 * 1 2 3 32 32 H 1.08999 * 109.47247 * 305.00079 * 4 2 1 33 33 H 1.09000 * 109.46956 * 65.00146 * 4 2 1 34 34 H 1.08992 * 109.47398 * 94.22744 * 6 5 4 35 35 H 1.08996 * 109.47139 * 214.22950 * 6 5 4 36 36 H 1.09002 * 109.47000 * 334.22445 * 6 5 4 37 37 H 0.97003 * 120.00492 * 180.02562 * 10 9 7 38 38 H 0.96997 * 119.99860 * 94.99811 * 15 2 1 39 39 H 1.08005 * 120.02080 * 0.02562 * 19 18 16 40 40 H 1.09001 * 109.47147 * 60.00167 * 23 22 21 41 41 H 1.08991 * 109.47086 * 300.00353 * 23 22 21 42 42 H 1.08996 * 115.55364 * 330.58663 * 24 23 22 43 43 H 1.09001 * 117.49781 * 214.97501 * 25 24 23 44 44 H 1.09004 * 117.49383 * 359.97438 * 25 24 23 45 45 H 1.09001 * 117.50060 * 252.50708 * 26 25 24 46 46 H 1.09004 * 117.49833 * 107.48908 * 26 25 24 47 47 H 1.08001 * 119.98384 * 180.25308 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5001 -0.8266 -1.1904 6 6 4.3344 0.2338 -1.7612 7 6 4.0850 -1.9160 -0.6022 8 1 3.5338 -2.8401 -0.5084 9 6 5.3862 -1.8327 -0.1261 10 7 5.9794 -0.6615 -0.0335 11 14 6.2956 -3.3830 0.3830 12 1 5.4143 -4.5616 0.1844 13 1 7.5189 -3.5339 -0.4452 14 1 6.6763 -3.2858 1.8152 15 7 2.0184 -0.6905 1.1963 16 6 2.1471 -0.0181 2.3572 17 8 1.8585 1.1613 2.4115 18 6 2.6406 -0.7152 3.5647 19 6 2.7745 -0.0199 4.7659 20 7 3.2113 -0.6445 5.8442 21 6 3.5315 -1.9299 5.7820 22 8 3.9841 -2.5689 6.8877 23 6 4.0970 -1.7951 8.0838 24 6 4.6194 -2.6807 9.2167 25 6 5.9813 -2.3284 9.8187 26 6 4.7016 -2.0642 10.6147 27 6 3.3971 -2.6264 4.5800 28 7 2.9579 -2.0072 3.5055 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7200 -1.2950 33 1 1.7516 -0.1585 -2.1370 34 1 4.6023 0.9454 -0.9803 35 1 5.2404 -0.2031 -2.1811 36 1 3.7812 0.7481 -2.5471 37 1 6.8889 -0.6032 0.2988 38 1 2.2490 -1.6317 1.1528 39 1 2.5175 1.0280 4.8152 40 1 3.1181 -1.3994 8.3543 41 1 4.7894 -0.9697 7.9185 42 1 4.3580 -3.7365 9.1468 43 1 6.6158 -3.1525 10.1448 44 1 6.5054 -1.4657 9.4073 45 1 4.3838 -1.0277 10.7271 46 1 4.4942 -2.7146 11.4645 47 1 3.6543 -3.6743 4.5316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754330751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:47 Heat of formation + Delta-G solvation = 6.036009 kcal Electronic energy + Delta-G solvation = -29048.710348 eV Core-core repulsion = 25040.237017 eV Total energy + Delta-G solvation = -4008.473331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.57076 -40.71097 -39.72024 -38.03888 -37.81519 -35.81697 -35.33116 -33.21524 -32.46917 -31.27379 -28.94489 -28.01067 -27.34301 -25.90568 -25.77613 -23.64018 -23.31233 -22.41822 -21.79065 -21.26659 -19.82801 -19.42889 -18.81195 -18.45994 -17.58782 -17.14326 -16.82748 -16.63108 -16.27585 -16.03916 -15.65664 -15.57542 -15.33639 -15.03568 -14.87934 -14.64871 -14.44589 -14.17317 -13.82871 -13.38622 -13.08414 -13.01875 -12.97071 -12.84887 -12.72244 -12.51571 -12.44515 -12.32995 -12.25922 -12.12913 -11.95524 -11.90179 -11.66110 -11.49664 -11.30141 -11.01975 -10.58859 -10.41377 -10.05592 -9.73735 -8.73311 -7.75631 -5.21552 -0.67892 -0.16621 1.44991 1.48355 1.52084 1.56510 1.68551 2.22999 2.54896 2.66981 2.73589 2.84207 2.98478 3.25891 3.41541 3.67124 3.73160 3.84319 3.85937 3.95376 4.08286 4.16882 4.20111 4.37392 4.39440 4.47226 4.48123 4.56002 4.74056 4.78961 4.80780 4.88186 4.94076 4.96653 5.03358 5.15712 5.19653 5.20158 5.37143 5.42730 5.68908 5.70879 5.77810 5.79983 5.88939 6.36134 6.38825 6.73469 7.20821 7.28467 7.93332 8.37888 9.27929 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.003369 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.535923 B = 8309.106877 C = 9839.300541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.116 3.884 3 H 0.048 0.952 4 C 0.141 3.859 5 N -0.612 5.612 6 C 0.179 3.821 7 C -0.238 4.238 8 H 0.077 0.923 9 C -0.043 4.043 10 N -0.936 5.936 11 Si 0.948 3.052 12 H -0.257 1.257 13 H -0.301 1.301 14 H -0.301 1.301 15 N -0.665 5.665 16 C 0.573 3.427 17 O -0.580 6.580 18 C -0.025 4.025 19 C 0.153 3.847 20 N -0.504 5.504 21 C 0.295 3.705 22 O -0.290 6.290 23 C 0.095 3.905 24 C -0.173 4.173 25 C -0.180 4.180 26 C -0.153 4.153 27 C 0.046 3.954 28 N -0.382 5.382 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.079 0.921 34 H -0.008 1.008 35 H 0.018 0.982 36 H 0.030 0.970 37 H 0.239 0.761 38 H 0.412 0.588 39 H 0.194 0.806 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.120 0.880 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.117 0.883 47 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.641 -4.418 15.514 17.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.009 3.991 3 H 0.066 0.934 4 C 0.014 3.986 5 N -0.335 5.335 6 C 0.034 3.966 7 C -0.368 4.368 8 H 0.095 0.905 9 C -0.238 4.238 10 N -0.583 5.583 11 Si 0.778 3.222 12 H -0.180 1.180 13 H -0.228 1.228 14 H -0.229 1.229 15 N -0.313 5.313 16 C 0.357 3.643 17 O -0.462 6.462 18 C -0.163 4.163 19 C -0.005 4.005 20 N -0.233 5.233 21 C 0.111 3.889 22 O -0.194 6.194 23 C 0.020 3.980 24 C -0.191 4.191 25 C -0.217 4.217 26 C -0.190 4.190 27 C -0.122 4.122 28 N -0.099 5.099 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.010 0.990 35 H 0.037 0.963 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.249 0.751 39 H 0.210 0.790 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.138 0.862 43 H 0.126 0.874 44 H 0.111 0.889 45 H 0.121 0.879 46 H 0.135 0.865 47 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.632 -3.828 15.563 17.751 hybrid contribution 1.336 -0.544 0.383 1.492 sum -6.296 -4.372 15.946 17.693 Atomic orbital electron populations 1.22031 0.93320 1.02712 1.02416 1.21891 0.94473 0.96469 0.86247 0.93393 1.21415 0.83209 0.99445 0.94542 1.44152 1.00917 1.22047 1.66353 1.20493 0.92757 0.89919 0.93415 1.19401 0.96786 0.90199 1.30391 0.90503 1.25555 0.99838 0.97993 1.00445 1.70267 1.12829 1.23347 1.51875 0.85473 0.78783 0.81426 0.76556 1.18035 1.22844 1.22932 1.45680 1.62667 1.14791 1.08135 1.17656 0.77679 0.85642 0.83301 1.90689 1.53976 1.15902 1.85624 1.21939 1.05893 0.92046 0.96400 1.23571 0.89643 1.01495 0.85826 1.68258 1.15640 1.08470 1.30974 1.21351 0.89672 0.89045 0.88840 1.86222 1.77930 1.38142 1.17096 1.22442 1.02063 0.93087 0.80422 1.22141 1.02770 1.00789 0.93373 1.23205 0.90770 1.03966 1.03789 1.23105 1.00376 1.02686 0.92835 1.23424 1.00457 1.03083 0.85223 1.68379 1.04625 1.08550 1.28377 0.91256 0.93887 0.89560 0.91502 0.90280 0.98988 0.96308 0.95202 0.95181 0.75123 0.78953 0.90423 0.91663 0.86196 0.87372 0.88894 0.87920 0.86489 0.77573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 9.48 71.98 0.68 -3.40 16 2 C 0.12 4.27 2.88 44.99 0.13 4.40 16 3 H 0.05 2.06 7.58 -2.39 -0.02 2.04 16 4 C 0.14 5.13 5.36 86.38 0.46 5.59 16 5 N -0.61 -28.88 2.82 -726.93 -2.05 -30.93 16 6 C 0.18 8.84 9.01 127.77 1.15 9.99 16 7 C -0.24 -12.09 8.02 84.03 0.67 -11.41 16 8 H 0.08 3.74 7.84 -2.91 -0.02 3.71 16 9 C -0.04 -2.36 5.13 84.86 0.44 -1.92 16 10 N -0.94 -55.39 10.59 21.65 0.23 -55.16 16 11 Si 0.95 44.54 29.57 68.60 2.03 46.57 16 12 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 13 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 14 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 15 N -0.67 -26.65 4.48 -445.33 -1.99 -28.64 16 16 C 0.57 23.89 7.77 86.80 0.67 24.57 16 17 O -0.58 -26.19 16.00 -3.86 -0.06 -26.25 16 18 C -0.02 -0.93 6.74 41.79 0.28 -0.65 16 19 C 0.15 5.03 10.76 84.95 0.91 5.94 16 20 N -0.50 -15.18 9.37 -307.08 -2.88 -18.05 16 21 C 0.30 8.47 7.50 84.90 0.64 9.11 16 22 O -0.29 -7.16 10.12 -87.82 -0.89 -8.04 16 23 C 0.09 1.90 5.60 71.98 0.40 2.31 16 24 C -0.17 -2.67 6.06 -10.79 -0.07 -2.74 16 25 C -0.18 -2.45 10.18 30.60 0.31 -2.14 16 26 C -0.15 -1.73 10.25 30.59 0.31 -1.42 16 27 C 0.05 1.36 11.18 85.06 0.95 2.31 16 28 N -0.38 -13.67 9.70 -183.94 -1.78 -15.46 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 2.24 8.03 -2.39 -0.02 2.22 16 33 H 0.08 2.50 7.86 -2.39 -0.02 2.48 16 34 H -0.01 -0.46 7.42 -2.39 -0.02 -0.48 16 35 H 0.02 0.99 7.19 -2.39 -0.02 0.97 16 36 H 0.03 1.24 7.84 -2.39 -0.02 1.22 16 37 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 38 H 0.41 16.77 6.74 -92.71 -0.62 16.14 16 39 H 0.19 5.78 7.64 -2.91 -0.02 5.76 16 40 H 0.08 1.50 8.11 -2.39 -0.02 1.48 16 41 H 0.07 1.39 7.85 -2.39 -0.02 1.38 16 42 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.09 1.35 8.03 -2.38 -0.02 1.33 16 45 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.21 4.78 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -68.05 395.37 0.91 -67.13 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.35 Total: 28.30 kcal Atomic # 6 Polarization: 32.59 SS G_CDS: 7.96 Total: 40.55 kcal Atomic # 7 Polarization: -139.78 SS G_CDS: -8.47 Total: -148.25 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.95 Total: -34.30 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -68.05 0.91 -67.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754330751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.168 kcal (2) G-P(sol) polarization free energy of solvation -68.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds