Wall clock time and date at job start Tue Mar 31 2020 17:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46578 * 2 1 4 4 C 1.52999 * 109.47263 * 120.00503 * 2 1 3 5 5 N 1.46499 * 109.46913 * 174.99966 * 4 2 1 6 6 C 1.46503 * 119.99952 * 269.99748 * 5 4 2 7 7 C 1.36936 * 119.99664 * 90.00366 * 5 4 2 8 8 H 1.08000 * 119.99964 * 339.76816 * 7 5 4 9 9 C 1.38817 * 119.99789 * 160.04986 * 7 5 4 10 10 N 1.31621 * 119.99789 * 344.58338 * 9 7 5 11 11 Si 1.86801 * 119.99780 * 164.57899 * 9 7 5 12 12 H 1.48500 * 109.46879 * 60.00432 * 11 9 7 13 13 H 1.48509 * 109.46743 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47170 * 300.00072 * 11 9 7 15 15 N 1.46496 * 109.46987 * 240.00857 * 2 1 3 16 16 C 1.34780 * 120.00541 * 84.99641 * 15 2 1 17 17 O 1.21546 * 119.99492 * 0.02562 * 16 15 2 18 18 C 1.47901 * 120.00110 * 179.97438 * 16 15 2 19 19 C 1.39433 * 120.02446 * 179.73019 * 18 16 15 20 20 N 1.32052 * 119.95792 * 179.78260 * 19 18 16 21 21 C 1.32612 * 120.00766 * 0.46360 * 20 19 18 22 22 O 1.35488 * 119.97113 * 179.75811 * 21 20 19 23 23 C 1.42900 * 117.00192 * 0.02585 * 22 21 20 24 24 C 1.53004 * 109.47076 * 179.97438 * 23 22 21 25 25 C 1.52997 * 117.49830 * 243.74711 * 24 23 22 26 26 C 1.52996 * 117.49780 * 175.08740 * 24 23 22 27 27 C 1.39582 * 120.05045 * 359.78550 * 21 20 19 28 28 N 1.31555 * 120.04656 * 359.97438 * 27 21 20 29 29 H 1.08998 * 109.47112 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46899 * 299.99351 * 1 2 3 31 31 H 1.09003 * 109.47055 * 59.99433 * 1 2 3 32 32 H 1.08998 * 109.46683 * 54.99832 * 4 2 1 33 33 H 1.08996 * 109.46902 * 295.00079 * 4 2 1 34 34 H 1.08997 * 109.47310 * 264.78179 * 6 5 4 35 35 H 1.08993 * 109.46711 * 24.78677 * 6 5 4 36 36 H 1.09001 * 109.46847 * 144.78277 * 6 5 4 37 37 H 0.96997 * 119.99440 * 180.02562 * 10 9 7 38 38 H 0.97000 * 119.99772 * 264.99801 * 15 2 1 39 39 H 1.08006 * 120.01921 * 359.97438 * 19 18 16 40 40 H 1.08993 * 109.47295 * 300.00175 * 23 22 21 41 41 H 1.09005 * 109.47151 * 59.99782 * 23 22 21 42 42 H 1.08999 * 115.54481 * 29.41903 * 24 23 22 43 43 H 1.08997 * 117.50057 * 0.02562 * 25 24 23 44 44 H 1.09000 * 117.49871 * 145.02205 * 25 24 23 45 45 H 1.08999 * 117.49915 * 214.98189 * 26 24 23 46 46 H 1.09004 * 117.49796 * 0.02562 * 26 24 23 47 47 H 1.08008 * 119.97436 * 179.97438 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.1259 -1.9920 0.5609 7 6 4.2799 0.1647 1.7240 8 1 3.8655 1.1486 1.8877 9 6 5.6045 -0.0934 2.0489 10 7 6.0307 -1.3357 2.1357 11 14 6.7822 1.3222 2.3627 12 1 6.2856 2.1360 3.5013 13 1 8.1273 0.7840 2.6891 14 1 6.8697 2.1719 1.1480 15 7 2.0183 -0.6904 -1.1962 16 6 2.1470 -0.0180 -2.3572 17 8 1.8583 1.1614 -2.4115 18 6 2.6405 -0.7150 -3.5647 19 6 2.7685 -0.0212 -4.7674 20 7 3.2133 -0.6438 -5.8437 21 6 3.5293 -1.9302 -5.7827 22 8 3.9810 -2.5694 -6.8886 23 6 4.0924 -1.7959 -8.0850 24 6 4.6152 -2.6814 -9.2180 25 6 5.9766 -2.3280 -9.8200 26 6 4.6959 -2.0655 -10.6162 27 6 3.3964 -2.6264 -4.5802 28 7 2.9580 -2.0071 -3.5055 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -1.7199 1.2949 33 1 1.7517 -0.1585 2.1369 34 1 4.3669 -2.7316 1.3244 35 1 3.4369 -2.4277 -0.1626 36 1 5.0394 -1.6836 0.0526 37 1 6.9563 -1.5160 2.3631 38 1 2.2490 -1.6316 -1.1528 39 1 2.5069 1.0255 -4.8179 40 1 3.1131 -1.4007 -8.3547 41 1 4.7847 -0.9702 -7.9207 42 1 4.3549 -3.7375 -9.1475 43 1 6.5001 -1.4649 -9.4087 44 1 6.6119 -3.1515 -10.1460 45 1 4.4891 -2.7164 -11.4656 46 1 4.3769 -1.0292 -10.7288 47 1 3.6538 -3.6742 -4.5320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754330752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:52 Heat of formation + Delta-G solvation = 29.826860 kcal Electronic energy + Delta-G solvation = -28472.814230 eV Core-core repulsion = 24465.372548 eV Total energy + Delta-G solvation = -4007.441682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.55418 -39.58966 -38.73362 -37.23577 -36.40522 -34.49865 -33.98407 -31.72212 -30.95743 -30.05220 -28.15234 -26.15783 -25.62769 -24.81893 -24.78645 -22.85605 -22.09499 -21.18452 -20.77697 -20.08147 -18.89538 -18.26916 -17.54542 -16.74684 -16.70322 -16.14915 -15.50603 -15.18254 -15.05289 -14.87954 -14.69245 -14.52835 -13.97936 -13.75597 -13.59211 -13.32608 -13.14299 -12.83123 -12.29252 -12.10356 -12.04845 -11.97806 -11.91130 -11.59367 -11.44229 -11.31922 -11.28959 -10.98238 -10.79034 -10.65321 -10.59802 -10.44562 -10.16952 -10.10559 -9.92821 -9.82415 -9.33017 -8.97308 -8.62965 -8.42386 -6.74848 -5.69993 -3.13498 0.38066 0.84605 2.39293 2.87175 3.30324 3.39254 3.41794 3.46890 3.49683 3.76617 3.78033 4.01070 4.17986 4.34129 4.39732 4.52995 4.55061 4.77171 4.88882 5.06824 5.08499 5.14548 5.18177 5.33042 5.35797 5.42508 5.48759 5.61448 5.63879 5.65245 5.79649 5.86463 5.95790 6.10232 6.19688 6.44369 6.52871 6.70042 6.71798 6.79260 6.88531 7.03776 7.39282 7.41444 7.72013 7.83884 7.97058 8.40076 8.54884 9.25427 9.88990 10.35909 11.34873 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012555 B = 0.002682 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.583742 B =10438.417147 C =11626.229448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.113 3.887 3 H 0.087 0.913 4 C 0.143 3.857 5 N -0.599 5.599 6 C 0.168 3.832 7 C -0.252 4.252 8 H 0.068 0.932 9 C 0.001 3.999 10 N -0.908 5.908 11 Si 0.902 3.098 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.285 1.285 15 N -0.679 5.679 16 C 0.576 3.424 17 O -0.543 6.543 18 C -0.007 4.007 19 C 0.153 3.847 20 N -0.503 5.503 21 C 0.291 3.709 22 O -0.291 6.291 23 C 0.098 3.902 24 C -0.161 4.161 25 C -0.176 4.176 26 C -0.168 4.168 27 C 0.048 3.952 28 N -0.372 5.372 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.029 0.971 35 H -0.003 1.003 36 H 0.041 0.959 37 H 0.252 0.748 38 H 0.407 0.593 39 H 0.186 0.814 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.884 -4.497 -21.326 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.006 3.994 3 H 0.105 0.895 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.023 3.977 7 C -0.382 4.382 8 H 0.086 0.914 9 C -0.197 4.197 10 N -0.553 5.553 11 Si 0.732 3.268 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.212 1.212 15 N -0.329 5.329 16 C 0.359 3.641 17 O -0.421 6.421 18 C -0.146 4.146 19 C -0.006 4.006 20 N -0.232 5.232 21 C 0.107 3.893 22 O -0.196 6.196 23 C 0.023 3.977 24 C -0.179 4.179 25 C -0.213 4.213 26 C -0.205 4.205 27 C -0.119 4.119 28 N -0.089 5.089 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.015 0.985 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.245 0.755 39 H 0.203 0.797 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.135 0.865 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -6.814 -3.996 -21.309 22.726 hybrid contribution 0.997 0.447 -0.021 1.093 sum -5.817 -3.549 -21.330 22.393 Atomic orbital electron populations 1.22127 0.96265 1.01447 1.01891 1.22052 0.92329 0.99048 0.85970 0.89515 1.21049 0.85927 0.97636 0.93953 1.43856 0.99059 1.22849 1.66327 1.20809 0.94285 0.88837 0.93737 1.19131 0.92848 0.90362 1.35845 0.91409 1.24925 0.98475 0.96064 1.00229 1.70077 1.15788 1.16995 1.52419 0.86372 0.80408 0.81891 0.78127 1.20912 1.21710 1.21192 1.45913 1.63835 1.14617 1.08557 1.17408 0.78252 0.85933 0.82462 1.90763 1.51806 1.14801 1.84770 1.22164 1.04383 0.91435 0.96635 1.23517 0.89701 1.01274 0.86094 1.68233 1.15287 1.08177 1.31540 1.21244 0.90484 0.89215 0.88330 1.86207 1.78562 1.37925 1.16872 1.22264 1.01890 0.92794 0.80745 1.22149 1.01747 1.00885 0.93106 1.23137 0.90668 1.03770 1.03683 1.23008 1.01726 1.02249 0.93526 1.22974 1.01211 1.02046 0.85641 1.68419 1.04349 1.08429 1.27742 0.92932 0.91732 0.92851 0.93985 0.91727 0.95243 0.98508 0.94029 0.93793 0.75479 0.79703 0.90756 0.90989 0.86467 0.88394 0.88295 0.88090 0.88361 0.79967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.48 37.16 0.35 -1.92 16 2 C 0.11 2.02 2.88 -67.93 -0.20 1.83 16 3 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 4 C 0.14 2.79 5.29 -4.04 -0.02 2.77 16 5 N -0.60 -14.66 2.78 -181.12 -0.50 -15.17 16 6 C 0.17 4.04 8.52 59.85 0.51 4.55 16 7 C -0.25 -6.93 9.67 -15.06 -0.15 -7.08 16 8 H 0.07 1.84 7.87 -52.49 -0.41 1.42 16 9 C 0.00 0.03 5.06 -17.43 -0.09 -0.06 16 10 N -0.91 -26.55 10.67 55.49 0.59 -25.96 16 11 Si 0.90 22.36 29.58 -169.99 -5.03 17.33 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 N -0.68 -12.02 4.51 -54.73 -0.25 -12.27 16 16 C 0.58 10.34 7.77 -12.30 -0.10 10.24 16 17 O -0.54 -10.83 16.00 5.33 0.09 -10.75 16 18 C -0.01 -0.11 6.74 -82.88 -0.56 -0.67 16 19 C 0.15 2.11 10.76 -17.01 -0.18 1.92 16 20 N -0.50 -6.50 9.37 -12.76 -0.12 -6.62 16 21 C 0.29 3.54 7.50 -16.71 -0.13 3.41 16 22 O -0.29 -3.12 10.12 -18.15 -0.18 -3.30 16 23 C 0.10 0.87 5.60 37.16 0.21 1.08 16 24 C -0.16 -1.14 6.05 -90.62 -0.55 -1.68 16 25 C -0.18 -1.10 10.18 -26.70 -0.27 -1.37 16 26 C -0.17 -0.94 10.25 -26.70 -0.27 -1.21 16 27 C 0.05 0.58 11.18 -17.17 -0.19 0.39 16 28 N -0.37 -5.42 9.70 -9.49 -0.09 -5.51 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 33 H 0.06 1.25 8.04 -51.93 -0.42 0.83 16 34 H 0.03 0.77 7.40 -51.93 -0.38 0.39 16 35 H 0.00 -0.07 5.76 -51.93 -0.30 -0.37 16 36 H 0.04 1.11 7.20 -51.93 -0.37 0.73 16 37 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.41 7.04 5.55 -40.82 -0.23 6.81 16 39 H 0.19 2.30 7.64 -52.48 -0.40 1.90 16 40 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 41 H 0.07 0.66 7.84 -51.93 -0.41 0.25 16 42 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.10 0.62 8.03 -51.93 -0.42 0.20 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.18 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -32.01 393.45 -8.29 -40.30 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.09 Total: 3.82 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: -1.63 Total: 12.20 kcal Atomic # 7 Polarization: -65.16 SS G_CDS: -0.37 Total: -65.53 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.10 Total: -14.05 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.01 -8.29 -40.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754330752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.123 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds