Wall clock time and date at job start Tue Mar 31 2020 17:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46578 * 2 1 4 4 C 1.52999 * 109.47263 * 120.00503 * 2 1 3 5 5 N 1.46499 * 109.46913 * 174.99966 * 4 2 1 6 6 C 1.46503 * 119.99952 * 269.99748 * 5 4 2 7 7 C 1.36936 * 119.99664 * 90.00366 * 5 4 2 8 8 H 1.08000 * 119.99964 * 339.76816 * 7 5 4 9 9 C 1.38817 * 119.99789 * 160.04986 * 7 5 4 10 10 N 1.31621 * 119.99789 * 344.58338 * 9 7 5 11 11 Si 1.86801 * 119.99780 * 164.57899 * 9 7 5 12 12 H 1.48500 * 109.46879 * 60.00432 * 11 9 7 13 13 H 1.48509 * 109.46743 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47170 * 300.00072 * 11 9 7 15 15 N 1.46496 * 109.46987 * 240.00857 * 2 1 3 16 16 C 1.34780 * 120.00541 * 84.99641 * 15 2 1 17 17 O 1.21546 * 119.99492 * 0.02562 * 16 15 2 18 18 C 1.47901 * 120.00110 * 179.97438 * 16 15 2 19 19 C 1.39433 * 120.02446 * 179.73019 * 18 16 15 20 20 N 1.32052 * 119.95792 * 179.78260 * 19 18 16 21 21 C 1.32612 * 120.00766 * 0.46360 * 20 19 18 22 22 O 1.35488 * 119.97113 * 179.75811 * 21 20 19 23 23 C 1.42900 * 117.00192 * 0.02585 * 22 21 20 24 24 C 1.53004 * 109.47076 * 179.97438 * 23 22 21 25 25 C 1.52997 * 117.49830 * 243.74711 * 24 23 22 26 26 C 1.52996 * 117.49780 * 175.08740 * 24 23 22 27 27 C 1.39582 * 120.05045 * 359.78550 * 21 20 19 28 28 N 1.31555 * 120.04656 * 359.97438 * 27 21 20 29 29 H 1.08998 * 109.47112 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46899 * 299.99351 * 1 2 3 31 31 H 1.09003 * 109.47055 * 59.99433 * 1 2 3 32 32 H 1.08998 * 109.46683 * 54.99832 * 4 2 1 33 33 H 1.08996 * 109.46902 * 295.00079 * 4 2 1 34 34 H 1.08997 * 109.47310 * 264.78179 * 6 5 4 35 35 H 1.08993 * 109.46711 * 24.78677 * 6 5 4 36 36 H 1.09001 * 109.46847 * 144.78277 * 6 5 4 37 37 H 0.96997 * 119.99440 * 180.02562 * 10 9 7 38 38 H 0.97000 * 119.99772 * 264.99801 * 15 2 1 39 39 H 1.08006 * 120.01921 * 359.97438 * 19 18 16 40 40 H 1.08993 * 109.47295 * 300.00175 * 23 22 21 41 41 H 1.09005 * 109.47151 * 59.99782 * 23 22 21 42 42 H 1.08999 * 115.54481 * 29.41903 * 24 23 22 43 43 H 1.08997 * 117.50057 * 0.02562 * 25 24 23 44 44 H 1.09000 * 117.49871 * 145.02205 * 25 24 23 45 45 H 1.08999 * 117.49915 * 214.98189 * 26 24 23 46 46 H 1.09004 * 117.49796 * 0.02562 * 26 24 23 47 47 H 1.08008 * 119.97436 * 179.97438 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.1259 -1.9920 0.5609 7 6 4.2799 0.1647 1.7240 8 1 3.8655 1.1486 1.8877 9 6 5.6045 -0.0934 2.0489 10 7 6.0307 -1.3357 2.1357 11 14 6.7822 1.3222 2.3627 12 1 6.2856 2.1360 3.5013 13 1 8.1273 0.7840 2.6891 14 1 6.8697 2.1719 1.1480 15 7 2.0183 -0.6904 -1.1962 16 6 2.1470 -0.0180 -2.3572 17 8 1.8583 1.1614 -2.4115 18 6 2.6405 -0.7150 -3.5647 19 6 2.7685 -0.0212 -4.7674 20 7 3.2133 -0.6438 -5.8437 21 6 3.5293 -1.9302 -5.7827 22 8 3.9810 -2.5694 -6.8886 23 6 4.0924 -1.7959 -8.0850 24 6 4.6152 -2.6814 -9.2180 25 6 5.9766 -2.3280 -9.8200 26 6 4.6959 -2.0655 -10.6162 27 6 3.3964 -2.6264 -4.5802 28 7 2.9580 -2.0071 -3.5055 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -1.7199 1.2949 33 1 1.7517 -0.1585 2.1369 34 1 4.3669 -2.7316 1.3244 35 1 3.4369 -2.4277 -0.1626 36 1 5.0394 -1.6836 0.0526 37 1 6.9563 -1.5160 2.3631 38 1 2.2490 -1.6316 -1.1528 39 1 2.5069 1.0255 -4.8179 40 1 3.1131 -1.4007 -8.3547 41 1 4.7847 -0.9702 -7.9207 42 1 4.3549 -3.7375 -9.1475 43 1 6.5001 -1.4649 -9.4087 44 1 6.6119 -3.1515 -10.1460 45 1 4.4891 -2.7164 -11.4656 46 1 4.3769 -1.0292 -10.7288 47 1 3.6538 -3.6742 -4.5320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754330752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:51 Heat of formation + Delta-G solvation = 8.090600 kcal Electronic energy + Delta-G solvation = -28473.756785 eV Core-core repulsion = 24465.372548 eV Total energy + Delta-G solvation = -4008.384237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.59482 -40.79844 -39.74372 -38.11232 -37.81444 -35.90856 -35.36329 -33.20283 -32.52290 -31.43257 -28.94855 -28.00727 -27.42174 -25.93840 -25.78057 -23.69128 -23.30043 -22.38695 -21.79152 -21.49656 -19.81878 -19.39647 -18.90632 -18.53655 -17.58550 -17.15330 -16.94862 -16.63067 -16.32913 -16.05731 -15.71386 -15.53203 -15.30920 -15.19010 -14.94153 -14.73574 -14.46098 -14.15641 -13.69524 -13.51133 -13.23077 -13.02994 -12.99369 -12.79934 -12.72126 -12.51516 -12.43561 -12.33397 -12.30157 -12.24878 -12.01410 -11.86307 -11.78925 -11.48483 -11.35582 -11.01132 -10.64394 -10.44570 -10.12557 -9.83112 -8.76717 -7.82223 -5.26785 -0.70621 -0.17766 1.43074 1.45957 1.51804 1.52659 1.63051 2.11513 2.50150 2.61356 2.74047 2.83808 2.93293 3.24404 3.29779 3.66505 3.69442 3.78342 3.87115 3.94683 4.06706 4.16900 4.18593 4.38181 4.39261 4.42641 4.49835 4.50549 4.75777 4.78125 4.79618 4.81720 4.94062 4.98590 5.01422 5.16194 5.17789 5.21026 5.31481 5.43556 5.58655 5.64862 5.74167 5.80663 5.86722 6.32155 6.33380 6.61374 7.16074 7.16502 7.88888 8.29729 9.20061 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012555 B = 0.002682 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.583742 B =10438.417147 C =11626.229448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.121 3.879 3 H 0.054 0.946 4 C 0.142 3.858 5 N -0.613 5.613 6 C 0.187 3.813 7 C -0.256 4.256 8 H 0.066 0.934 9 C -0.053 4.053 10 N -0.934 5.934 11 Si 0.959 3.041 12 H -0.273 1.273 13 H -0.293 1.293 14 H -0.289 1.289 15 N -0.680 5.680 16 C 0.573 3.427 17 O -0.571 6.571 18 C -0.030 4.030 19 C 0.157 3.843 20 N -0.507 5.507 21 C 0.298 3.702 22 O -0.288 6.288 23 C 0.095 3.905 24 C -0.171 4.171 25 C -0.180 4.180 26 C -0.157 4.157 27 C 0.054 3.946 28 N -0.386 5.386 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.005 0.995 35 H 0.033 0.967 36 H 0.007 0.993 37 H 0.247 0.753 38 H 0.409 0.591 39 H 0.193 0.807 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.120 0.880 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.115 0.885 46 H 0.102 0.898 47 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.635 -5.138 -22.781 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 H 0.073 0.927 4 C 0.015 3.985 5 N -0.336 5.336 6 C 0.041 3.959 7 C -0.386 4.386 8 H 0.084 0.916 9 C -0.248 4.248 10 N -0.582 5.582 11 Si 0.788 3.212 12 H -0.199 1.199 13 H -0.219 1.219 14 H -0.216 1.216 15 N -0.330 5.330 16 C 0.358 3.642 17 O -0.451 6.451 18 C -0.168 4.168 19 C -0.002 4.002 20 N -0.236 5.236 21 C 0.113 3.887 22 O -0.192 6.192 23 C 0.020 3.980 24 C -0.189 4.189 25 C -0.217 4.217 26 C -0.194 4.194 27 C -0.114 4.114 28 N -0.103 5.103 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.023 0.977 35 H 0.052 0.948 36 H 0.026 0.974 37 H 0.056 0.944 38 H 0.247 0.753 39 H 0.210 0.790 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.138 0.862 43 H 0.112 0.888 44 H 0.126 0.874 45 H 0.133 0.867 46 H 0.120 0.880 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -7.609 -4.620 -22.766 24.444 hybrid contribution 1.211 0.583 0.292 1.376 sum -6.397 -4.037 -22.474 23.713 Atomic orbital electron populations 1.22016 0.93123 1.02893 1.02474 1.21819 0.94628 0.96849 0.85302 0.92736 1.21242 0.83157 0.99222 0.94849 1.44058 1.01029 1.22274 1.66255 1.20501 0.93852 0.88175 0.93325 1.19410 0.93446 0.91078 1.34707 0.91572 1.25602 0.99964 0.98042 1.01152 1.70220 1.15571 1.18430 1.53943 0.85465 0.78443 0.79402 0.77916 1.19867 1.21931 1.21577 1.45904 1.63981 1.14604 1.08561 1.17728 0.77648 0.85713 0.83093 1.90733 1.53079 1.15971 1.85362 1.21835 1.06633 0.92181 0.96155 1.23572 0.89303 1.01550 0.85739 1.68282 1.15606 1.08684 1.31064 1.21437 0.89338 0.88956 0.88947 1.86231 1.77839 1.38084 1.17027 1.22431 1.02054 0.93062 0.80412 1.22143 1.02654 1.00818 0.93306 1.23214 0.90728 1.03979 1.03731 1.23114 1.00628 1.02661 0.92978 1.23480 0.99855 1.03177 0.84877 1.68362 1.04936 1.08091 1.28924 0.91006 0.90050 0.93375 0.91580 0.91429 0.97717 0.94847 0.97431 0.94404 0.75264 0.79046 0.90532 0.91461 0.86165 0.88764 0.87432 0.86675 0.87985 0.76864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.48 71.98 0.68 -3.24 16 2 C 0.12 4.23 2.88 44.99 0.13 4.36 16 3 H 0.05 2.27 7.58 -2.39 -0.02 2.25 16 4 C 0.14 5.38 5.29 86.38 0.46 5.84 16 5 N -0.61 -30.00 2.78 -726.95 -2.02 -32.03 16 6 C 0.19 9.02 8.52 127.77 1.09 10.11 16 7 C -0.26 -14.16 9.67 84.03 0.81 -13.35 16 8 H 0.07 3.61 7.87 -2.91 -0.02 3.58 16 9 C -0.05 -3.00 5.06 84.86 0.43 -2.57 16 10 N -0.93 -55.64 10.67 21.65 0.23 -55.41 16 11 Si 0.96 46.51 29.58 68.60 2.03 48.54 16 12 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 14 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 15 N -0.68 -23.72 4.51 -445.35 -2.01 -25.73 16 16 C 0.57 20.62 7.77 86.80 0.67 21.30 16 17 O -0.57 -23.11 16.00 -3.86 -0.06 -23.17 16 18 C -0.03 -0.94 6.74 41.79 0.28 -0.65 16 19 C 0.16 4.26 10.76 84.95 0.91 5.17 16 20 N -0.51 -12.59 9.37 -307.06 -2.88 -15.47 16 21 C 0.30 6.78 7.50 84.90 0.64 7.42 16 22 O -0.29 -5.66 10.12 -87.88 -0.89 -6.55 16 23 C 0.10 1.55 5.60 71.98 0.40 1.95 16 24 C -0.17 -2.12 6.05 -10.79 -0.07 -2.19 16 25 C -0.18 -1.95 10.18 30.62 0.31 -1.64 16 26 C -0.16 -1.43 10.25 30.62 0.31 -1.11 16 27 C 0.05 1.21 11.18 85.06 0.95 2.16 16 28 N -0.39 -10.83 9.70 -183.93 -1.78 -12.62 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 33 H 0.07 2.52 8.04 -2.39 -0.02 2.50 16 34 H 0.00 0.24 7.40 -2.39 -0.02 0.23 16 35 H 0.03 1.34 5.76 -2.39 -0.01 1.32 16 36 H 0.01 0.38 7.20 -2.39 -0.02 0.36 16 37 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.41 13.71 5.55 -92.71 -0.51 13.19 16 39 H 0.19 4.79 7.64 -2.91 -0.02 4.77 16 40 H 0.08 1.21 8.11 -2.39 -0.02 1.19 16 41 H 0.07 1.16 7.84 -2.38 -0.02 1.14 16 42 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.09 1.09 8.03 -2.39 -0.02 1.07 16 44 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.21 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -69.37 393.45 1.11 -68.26 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.47 Total: 20.61 kcal Atomic # 6 Polarization: 25.54 SS G_CDS: 8.02 Total: 33.56 kcal Atomic # 7 Polarization: -132.79 SS G_CDS: -8.46 Total: -141.25 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.95 Total: -29.72 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -69.37 1.11 -68.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754330752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.356 kcal (2) G-P(sol) polarization free energy of solvation -69.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds