Wall clock time and date at job start Tue Mar 31 2020 19:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47037 * 2 1 4 4 C 1.46503 * 119.99965 * 89.52238 * 3 2 1 5 5 C 1.52996 * 109.47215 * 94.77294 * 4 3 2 6 6 C 1.53779 * 113.61317 * 274.13365 * 5 4 3 7 7 C 1.53952 * 87.01963 * 220.05020 * 6 5 4 8 8 C 1.53774 * 87.11338 * 25.36531 * 7 6 5 9 9 C 1.34781 * 119.99850 * 269.51486 * 3 2 1 10 10 O 1.21358 * 119.99866 * 5.43657 * 9 3 2 11 11 C 1.49336 * 119.99885 * 185.43865 * 9 3 2 12 12 O 1.21390 * 120.00073 * 5.65416 * 11 9 3 13 13 N 1.34780 * 120.00171 * 185.65409 * 11 9 3 14 14 C 1.39924 * 120.00192 * 179.97438 * 13 11 9 15 15 C 1.40465 * 125.98165 * 359.71799 * 14 13 11 16 16 C 1.35212 * 107.86525 * 179.86137 * 15 14 13 17 17 N 1.34982 * 107.87903 * 0.39663 * 16 15 14 18 18 C 1.46503 * 125.97246 * 179.72507 * 17 16 15 19 19 C 1.50701 * 109.46908 * 124.99939 * 18 17 16 20 20 H 1.07999 * 120.00023 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00035 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00077 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00244 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46988 * 59.99660 * 23 21 19 25 25 H 1.48492 * 109.47264 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47073 * 300.00153 * 23 21 19 27 27 N 1.31278 * 125.98117 * 180.02562 * 14 13 11 28 28 H 1.08999 * 109.46777 * 300.00217 * 1 2 3 29 29 H 1.08996 * 109.46704 * 60.00013 * 1 2 3 30 30 H 1.09001 * 109.46972 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46777 * 239.99783 * 2 1 3 32 32 H 1.09004 * 109.46832 * 120.00242 * 2 1 3 33 33 H 1.09002 * 109.46581 * 214.76796 * 4 3 2 34 34 H 1.08994 * 109.47109 * 334.76573 * 4 3 2 35 35 H 1.09006 * 112.85349 * 45.32974 * 5 4 3 36 36 H 1.09004 * 113.61731 * 334.57245 * 6 5 4 37 37 H 1.09002 * 113.61662 * 105.47377 * 6 5 4 38 38 H 1.08998 * 113.53723 * 270.80643 * 7 6 5 39 39 H 1.09004 * 113.66421 * 139.93343 * 7 6 5 40 40 H 1.09003 * 113.61725 * 220.09626 * 8 7 6 41 41 H 1.08997 * 113.69910 * 89.19810 * 8 7 6 42 42 H 0.96997 * 119.99279 * 0.02562 * 13 11 9 43 43 H 1.07997 * 126.06391 * 0.02562 * 15 14 13 44 44 H 1.08011 * 126.05879 * 180.10851 * 16 15 14 45 45 H 1.08993 * 109.47245 * 245.00016 * 18 17 16 46 46 H 1.08999 * 109.47261 * 5.00499 * 18 17 16 47 47 H 0.96996 * 120.00257 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2525 2.0753 1.2687 5 6 3.7244 1.9357 1.6624 6 6 4.0348 0.6446 2.4380 7 6 4.9669 1.4944 3.3207 8 6 4.0952 2.7033 2.9423 9 6 2.2523 2.0132 -1.1672 10 8 1.9659 1.4752 -2.2166 11 6 2.8640 3.3756 -1.1691 12 8 3.2447 3.8714 -0.1285 13 7 2.9933 4.0547 -2.3261 14 6 3.5659 5.3314 -2.3278 15 6 4.0412 6.0241 -1.2021 16 6 4.5191 7.2177 -1.6208 17 7 4.3471 7.2869 -2.9579 18 6 4.7213 8.4135 -3.8164 19 6 5.6224 7.9253 -4.9213 20 1 5.8893 6.8804 -4.9785 21 6 6.1062 8.8127 -5.8592 22 7 5.7817 10.0852 -5.7892 23 14 7.2225 8.2075 -7.2292 24 1 6.5069 7.1869 -8.0364 25 1 7.6020 9.3493 -8.0994 26 1 8.4457 7.6048 -6.6412 27 7 3.7478 6.0937 -3.3810 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0051 3.1309 1.1563 34 1 1.6256 1.6358 2.0444 35 1 4.4044 2.1195 0.8305 36 1 3.1759 0.2396 2.9732 37 1 4.5577 -0.1059 1.8452 38 1 5.9873 1.5563 2.9427 39 1 4.9214 1.2375 4.3791 40 1 4.6668 3.6125 2.7559 41 1 3.2526 2.8636 3.6149 42 1 2.6887 3.6585 -3.1575 43 1 4.0297 5.6658 -0.1834 44 1 4.9562 7.9823 -0.9956 45 1 3.8234 8.8551 -4.2483 46 1 5.2462 9.1631 -3.2242 47 1 6.1217 10.7095 -6.4492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362232913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:46 Heat of formation + Delta-G solvation = 25.946274 kcal Electronic energy + Delta-G solvation = -28851.034773 eV Core-core repulsion = 24843.424816 eV Total energy + Delta-G solvation = -4007.609957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.51312 -41.70692 -39.81807 -39.49209 -37.13559 -36.13848 -35.25785 -32.82441 -32.27674 -31.00416 -29.18533 -28.72620 -26.77903 -26.34417 -24.91360 -24.20122 -23.60911 -22.34691 -21.40067 -20.56856 -20.16060 -18.87122 -18.71025 -18.27602 -17.84275 -17.27260 -16.94521 -16.82856 -16.24216 -16.17363 -15.79495 -15.49169 -15.43163 -15.00371 -14.62489 -14.57034 -14.26109 -14.13448 -13.84860 -13.68522 -13.53736 -13.20208 -13.08165 -12.96722 -12.82728 -12.74922 -12.49858 -12.33008 -12.23160 -12.06437 -11.93539 -11.63868 -11.61300 -11.42428 -11.16944 -10.98665 -10.73238 -10.47787 -9.85017 -9.75485 -9.18633 -8.34579 -6.48280 0.09202 0.90136 1.15132 1.37223 1.39292 1.47904 1.75964 1.82148 2.27945 2.32340 2.48127 2.97614 3.11995 3.76756 3.89178 3.91224 3.93136 4.09390 4.12127 4.23194 4.29652 4.34645 4.52655 4.63219 4.65171 4.75798 4.79349 4.85673 4.89459 4.94935 4.96615 4.97449 5.01401 5.02218 5.12932 5.14879 5.27908 5.28297 5.35231 5.54232 5.55042 5.71639 5.76179 5.81789 5.88522 6.07578 6.25968 6.53341 6.63217 6.80215 6.98485 7.21653 8.73035 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.002514 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.157048 B =11134.271154 C =11904.327923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 N -0.567 5.567 4 C 0.114 3.886 5 C -0.115 4.115 6 C -0.132 4.132 7 C -0.143 4.143 8 C -0.126 4.126 9 C 0.514 3.486 10 O -0.543 6.543 11 C 0.510 3.490 12 O -0.485 6.485 13 N -0.605 5.605 14 C 0.260 3.740 15 C -0.283 4.283 16 C 0.058 3.942 17 N -0.341 5.341 18 C 0.272 3.728 19 C -0.550 4.550 20 H 0.051 0.949 21 C 0.021 3.979 22 N -0.919 5.919 23 Si 0.969 3.031 24 H -0.276 1.276 25 H -0.272 1.272 26 H -0.269 1.269 27 N -0.345 5.345 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.096 0.904 42 H 0.424 0.576 43 H 0.179 0.821 44 H 0.206 0.794 45 H 0.022 0.978 46 H 0.063 0.937 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 -19.874 21.028 29.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.299 5.299 4 C -0.008 4.008 5 C -0.135 4.135 6 C -0.169 4.169 7 C -0.180 4.180 8 C -0.164 4.164 9 C 0.295 3.705 10 O -0.421 6.421 11 C 0.291 3.709 12 O -0.358 6.358 13 N -0.254 5.254 14 C 0.006 3.994 15 C -0.314 4.314 16 C -0.090 4.090 17 N -0.123 5.123 18 C 0.154 3.846 19 C -0.588 4.588 20 H 0.069 0.931 21 C -0.180 4.180 22 N -0.558 5.558 23 Si 0.793 3.207 24 H -0.201 1.201 25 H -0.197 1.197 26 H -0.194 1.194 27 N -0.176 5.176 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.107 0.893 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.114 0.886 42 H 0.262 0.738 43 H 0.196 0.804 44 H 0.222 0.778 45 H 0.040 0.960 46 H 0.080 0.920 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.757 -19.463 19.846 28.859 hybrid contribution 0.632 0.054 -0.898 1.100 sum -7.125 -19.408 18.948 28.044 Atomic orbital electron populations 1.22106 0.94584 1.03543 1.01959 1.21830 0.95354 0.79763 1.04569 1.47975 1.61656 1.14865 1.05385 1.22166 0.96432 0.98599 0.83563 1.22763 0.95839 0.97784 0.97077 1.23082 1.00238 0.95692 0.97921 1.22811 0.98001 0.96780 1.00421 1.22814 1.00118 0.97095 0.96380 1.19660 0.80036 0.85667 0.85124 1.90773 1.52067 1.67324 1.31930 1.20353 0.80476 0.86889 0.83146 1.90681 1.46172 1.68606 1.30324 1.42182 1.58349 1.13006 1.11911 1.19337 0.99276 0.87309 0.93454 1.21742 1.13917 0.95426 1.00285 1.23247 1.00534 1.00277 0.84945 1.48890 1.44215 1.12666 1.06505 1.19359 0.95273 0.80673 0.89328 1.21375 1.30323 0.95095 1.12027 0.93084 1.25702 0.97634 0.94789 0.99894 1.69974 1.45441 1.03160 1.37195 0.85445 0.78812 0.78021 0.78439 1.20092 1.19654 1.19416 1.77325 1.22975 0.95577 1.21763 0.91250 0.94419 0.89408 0.90840 0.86783 0.89346 0.87252 0.91828 0.88051 0.92238 0.91450 0.90292 0.92774 0.88587 0.73836 0.80393 0.77771 0.96027 0.91963 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.24 71.98 0.74 -1.11 16 2 C 0.11 1.34 6.07 86.38 0.52 1.87 16 3 N -0.57 -10.05 2.48 -823.52 -2.04 -12.10 16 4 C 0.11 1.66 4.79 86.38 0.41 2.07 16 5 C -0.12 -1.83 2.89 -10.27 -0.03 -1.86 16 6 C -0.13 -1.49 7.58 31.18 0.24 -1.25 16 7 C -0.14 -1.80 8.09 31.18 0.25 -1.55 16 8 C -0.13 -1.82 7.65 31.12 0.24 -1.58 16 9 C 0.51 12.93 7.69 87.23 0.67 13.60 16 10 O -0.54 -16.14 16.12 -3.27 -0.05 -16.19 16 11 C 0.51 14.57 7.61 87.23 0.66 15.24 16 12 O -0.49 -13.65 8.80 -3.37 -0.03 -13.68 16 13 N -0.60 -20.07 5.43 -308.89 -1.68 -21.74 16 14 C 0.26 10.38 8.10 133.40 1.08 11.46 16 15 C -0.28 -10.31 9.60 22.11 0.21 -10.10 16 16 C 0.06 2.20 11.43 83.51 0.95 3.15 16 17 N -0.34 -15.83 3.67 -351.85 -1.29 -17.13 16 18 C 0.27 14.06 6.26 85.63 0.54 14.60 16 19 C -0.55 -31.22 9.24 25.60 0.24 -30.98 16 20 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 21 C 0.02 1.14 5.46 84.65 0.46 1.60 16 22 N -0.92 -52.15 13.29 21.45 0.28 -51.86 16 23 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 N -0.35 -16.29 12.42 -54.53 -0.68 -16.97 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 1.16 7.49 -2.39 -0.02 1.15 16 32 H 0.11 0.78 8.01 -2.38 -0.02 0.76 16 33 H 0.09 1.62 5.91 -2.39 -0.01 1.61 16 34 H 0.11 0.91 7.77 -2.39 -0.02 0.89 16 35 H 0.06 1.43 7.18 -2.38 -0.02 1.41 16 36 H 0.10 0.70 7.92 -2.38 -0.02 0.68 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 41 H 0.10 1.05 8.10 -2.39 -0.02 1.03 16 42 H 0.42 13.48 8.31 -92.71 -0.77 12.71 16 43 H 0.18 5.81 5.91 -2.91 -0.02 5.79 16 44 H 0.21 5.88 8.06 -2.91 -0.02 5.86 16 45 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.06 3.10 8.07 -2.39 -0.02 3.09 16 47 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -68.26 389.72 3.95 -64.32 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.22 Total: 24.14 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 7.19 Total: 15.16 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -5.40 Total: -119.80 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.08 Total: -29.87 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -68.26 3.95 -64.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362232913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.262 kcal (2) G-P(sol) polarization free energy of solvation -68.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds