Wall clock time and date at job start Tue Mar 31 2020 18:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47682 * 2 1 4 4 N 1.28389 * 119.09861 * 270.27651 * 3 2 1 5 5 C 1.31403 * 122.26394 * 180.28991 * 4 3 2 6 6 C 1.47886 * 119.89260 * 179.70098 * 5 4 3 7 7 O 1.21547 * 120.00041 * 179.73436 * 6 5 4 8 8 N 1.34782 * 119.99997 * 359.72803 * 6 5 4 9 9 C 1.46494 * 119.99883 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47153 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.47357 * 179.97438 * 10 9 8 12 12 H 1.09008 * 110.88141 * 57.43250 * 11 10 9 13 13 C 1.55154 * 111.03901 * 181.33347 * 11 10 9 14 14 C 1.54325 * 102.94303 * 153.59308 * 13 11 10 15 15 N 1.47290 * 107.30599 * 337.81911 * 14 13 11 16 16 C 1.36938 * 125.79079 * 178.92205 * 15 14 13 17 17 H 1.08005 * 119.99558 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00146 * 0.02562 * 16 15 14 19 19 N 1.31620 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47268 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47204 * 119.99715 * 20 18 16 23 23 H 1.48508 * 109.46889 * 239.99519 * 20 18 16 24 24 C 1.47425 * 108.55742 * 358.92448 * 15 14 13 25 25 C 1.41572 * 120.21185 * 359.43167 * 5 4 3 26 26 C 1.36325 * 118.24056 * 0.27182 * 25 5 4 27 27 C 1.34613 * 119.10126 * 89.99306 * 3 2 1 28 28 O 1.21978 * 120.22538 * 359.97438 * 27 3 2 29 29 H 1.09003 * 109.47218 * 300.00427 * 1 2 3 30 30 H 1.09007 * 109.46769 * 59.99776 * 1 2 3 31 31 H 1.08992 * 109.47534 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47393 * 239.99814 * 2 1 3 33 33 H 1.09006 * 109.47294 * 119.99666 * 2 1 3 34 34 H 0.97001 * 119.99978 * 359.97438 * 8 6 5 35 35 H 1.09003 * 109.47419 * 60.00332 * 9 8 6 36 36 H 1.09000 * 109.47726 * 300.00454 * 9 8 6 37 37 H 1.09005 * 109.46769 * 60.00435 * 10 9 8 38 38 H 1.08992 * 109.47516 * 300.00618 * 10 9 8 39 39 H 1.09002 * 110.72290 * 271.95994 * 13 11 10 40 40 H 1.08994 * 110.71922 * 35.05463 * 13 11 10 41 41 H 1.09004 * 109.88239 * 97.22707 * 14 13 11 42 42 H 1.08995 * 109.88239 * 218.23629 * 14 13 11 43 43 H 0.96999 * 120.00175 * 180.02562 * 19 18 16 44 44 H 1.09002 * 110.36696 * 265.26054 * 24 15 14 45 45 H 1.08995 * 110.36608 * 143.04891 * 24 15 14 46 46 H 1.08006 * 120.88074 * 180.24851 * 25 5 4 47 47 H 1.08006 * 121.03613 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2215 1.9717 -1.1218 5 6 2.6639 3.2068 -1.1944 6 6 2.8857 3.8339 -2.5153 7 8 3.2903 4.9779 -2.5847 8 7 2.6393 3.1367 -3.6421 9 6 2.8584 3.7580 -4.9506 10 6 2.5062 2.7593 -6.0548 11 6 2.7345 3.4084 -7.4214 12 1 3.7648 3.7498 -7.5221 13 6 2.3559 2.4363 -8.5699 14 6 1.9872 3.3921 -9.7242 15 7 1.6321 4.6888 -9.1228 16 6 1.2644 5.8157 -9.8085 17 1 1.0229 6.7205 -9.2704 18 6 1.2023 5.7952 -11.1950 19 7 1.4971 4.6928 -11.8508 20 14 0.7014 7.3327 -12.1303 21 1 0.4238 8.4291 -11.1680 22 1 1.8023 7.7392 -13.0404 23 1 -0.5205 7.0519 -12.9262 24 6 1.7386 4.5712 -7.6571 25 6 2.9236 3.9412 -0.0122 26 6 2.7076 3.3303 1.1872 27 6 2.2366 1.9985 1.1762 28 8 2.0285 1.4120 2.2253 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.3168 2.2235 -3.5867 35 1 3.9049 4.0485 -5.0442 36 1 2.2265 4.6412 -5.0439 37 1 1.4598 2.4685 -5.9614 38 1 3.1384 1.8763 -5.9614 39 1 3.2067 1.8120 -8.8430 40 1 1.5021 1.8203 -8.2881 41 1 2.8407 3.5145 -10.3911 42 1 1.1379 2.9932 -10.2788 43 1 1.4541 4.6785 -12.8197 44 1 0.7672 4.3324 -7.2241 45 1 2.1267 5.4957 -7.2296 46 1 3.2836 4.9584 -0.0593 47 1 2.8911 3.8482 2.1170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714879310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:59 Heat of formation + Delta-G solvation = 14.099797 kcal Electronic energy + Delta-G solvation = -27928.514306 eV Core-core repulsion = 23920.390648 eV Total energy + Delta-G solvation = -4008.123659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.63571 -39.94908 -38.19052 -37.80032 -35.93896 -35.34100 -33.15371 -32.47671 -31.46386 -30.54813 -28.99215 -26.97917 -26.19233 -25.22956 -24.56872 -23.20837 -22.41247 -21.48043 -19.99330 -19.71538 -18.92296 -18.47440 -17.22452 -17.07724 -16.86330 -16.43157 -15.88874 -15.76472 -15.00982 -14.80654 -14.65250 -14.53211 -14.11059 -13.95770 -13.78319 -13.69875 -13.54453 -13.01474 -12.69689 -12.47578 -12.29070 -12.14427 -11.96412 -11.83520 -11.77452 -11.57561 -11.11726 -10.96203 -10.86383 -10.77697 -10.58258 -10.26116 -10.11570 -9.96823 -9.86093 -9.76588 -9.60959 -9.30578 -9.03114 -8.58151 -6.79486 -5.68750 -3.01592 -0.06470 0.67538 1.56696 2.41171 2.75700 3.10891 3.41497 3.43931 3.47223 3.49596 4.13145 4.27699 4.32808 4.44165 4.46459 4.52491 4.69408 4.86967 4.93385 5.07416 5.12180 5.21742 5.26162 5.30890 5.39958 5.49372 5.52924 5.57223 5.60024 5.65180 5.72957 5.84113 6.00313 6.07432 6.18847 6.27681 6.39076 6.56163 6.59996 6.74124 6.98107 6.99211 7.18827 7.47224 7.59563 7.65272 7.85339 7.85898 8.28882 9.25078 9.85832 10.52418 11.43383 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022655 B = 0.001923 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.636056 B =14558.962654 C =15161.972660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 N -0.334 5.334 4 N -0.180 5.180 5 C 0.021 3.979 6 C 0.585 3.415 7 O -0.524 6.524 8 N -0.708 5.708 9 C 0.115 3.885 10 C -0.116 4.116 11 C -0.100 4.100 12 H 0.076 0.924 13 C -0.138 4.138 14 C 0.176 3.824 15 N -0.607 5.607 16 C -0.225 4.225 17 H 0.078 0.922 18 C -0.011 4.011 19 N -0.923 5.923 20 Si 0.911 3.089 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.139 3.861 25 C -0.030 4.030 26 C -0.192 4.192 27 C 0.480 3.520 28 O -0.525 6.525 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.407 0.593 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.041 0.959 43 H 0.251 0.749 44 H 0.017 0.983 45 H 0.038 0.962 46 H 0.165 0.835 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 -10.709 24.704 27.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.015 4.015 3 N -0.157 5.157 4 N -0.011 5.011 5 C -0.151 4.151 6 C 0.367 3.633 7 O -0.398 6.398 8 N -0.359 5.359 9 C -0.007 4.007 10 C -0.155 4.155 11 C -0.120 4.120 12 H 0.095 0.905 13 C -0.176 4.176 14 C 0.052 3.948 15 N -0.334 5.334 16 C -0.353 4.353 17 H 0.096 0.904 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.013 3.987 25 C -0.054 4.054 26 C -0.222 4.222 27 C 0.279 3.721 28 O -0.403 6.403 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.243 0.757 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.035 0.965 45 H 0.056 0.944 46 H 0.183 0.817 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.137 -10.883 24.515 26.907 hybrid contribution -0.247 0.899 0.004 0.933 sum 1.889 -9.984 24.518 26.541 Atomic orbital electron populations 1.22131 0.93368 1.03905 1.03293 1.22125 0.96291 0.77331 1.05792 1.46975 1.51229 1.14976 1.02506 1.71015 1.06472 1.10675 1.12924 1.21827 1.06311 0.90545 0.96423 1.17190 0.78477 0.85392 0.82228 1.90859 1.45876 1.16728 1.86294 1.45939 1.66412 1.17780 1.05780 1.21628 1.02304 0.96994 0.79798 1.21748 1.02088 0.97774 0.93856 1.22271 1.00342 0.97206 0.92216 0.90524 1.22893 0.99816 0.97811 0.97118 1.21171 0.99299 0.83386 0.90993 1.44555 1.80160 1.09251 0.99392 1.19121 1.38249 0.89035 0.88936 0.90402 1.24805 1.02068 0.97483 0.96334 1.69976 1.54984 1.25562 1.06584 0.86050 0.77734 0.82160 0.79879 1.20495 1.21790 1.21821 1.21614 0.94969 0.95195 0.86951 1.22266 0.91124 1.01705 0.90268 1.22709 1.04768 0.94192 1.00531 1.18126 0.80955 0.89021 0.83988 1.90979 1.52852 1.67057 1.29375 0.91763 0.91422 0.89787 0.87660 0.87318 0.75728 0.90892 0.90375 0.91182 0.91524 0.92349 0.92564 0.93698 0.94102 0.93884 0.96521 0.94407 0.81737 0.81309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.23 37.16 0.38 -0.49 16 2 C 0.10 0.59 6.27 -4.04 -0.03 0.56 16 3 N -0.33 -2.74 3.22 -63.33 -0.20 -2.94 16 4 N -0.18 -1.48 10.11 33.41 0.34 -1.14 16 5 C 0.02 0.19 6.84 -82.83 -0.57 -0.38 16 6 C 0.58 6.40 7.81 -12.31 -0.10 6.31 16 7 O -0.52 -7.38 16.38 5.32 0.09 -7.29 16 8 N -0.71 -6.88 5.54 -61.24 -0.34 -7.22 16 9 C 0.12 1.31 5.52 -4.04 -0.02 1.29 16 10 C -0.12 -1.33 4.85 -26.73 -0.13 -1.46 16 11 C -0.10 -1.59 3.07 -88.47 -0.27 -1.87 16 12 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 13 C -0.14 -2.43 6.42 -24.90 -0.16 -2.59 16 14 C 0.18 4.23 5.38 -2.92 -0.02 4.22 16 15 N -0.61 -15.50 3.40 -169.86 -0.58 -16.07 16 16 C -0.22 -6.32 10.28 -15.06 -0.15 -6.48 16 17 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 18 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 19 N -0.92 -27.29 10.33 55.49 0.57 -26.72 16 20 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C 0.14 2.77 5.89 -2.53 -0.01 2.76 16 25 C -0.03 -0.23 9.67 -39.00 -0.38 -0.61 16 26 C -0.19 -1.48 10.11 -39.12 -0.40 -1.87 16 27 C 0.48 4.66 7.47 -15.18 -0.11 4.55 16 28 O -0.52 -6.44 16.62 4.94 0.08 -6.36 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.11 0.62 7.36 -51.93 -0.38 0.23 16 34 H 0.41 3.11 7.81 -40.82 -0.32 2.80 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.02 7.45 -51.93 -0.39 0.63 16 37 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.92 8.04 -51.93 -0.42 0.50 16 41 H 0.04 1.20 7.39 -51.93 -0.38 0.81 16 42 H 0.04 1.09 7.51 -51.93 -0.39 0.70 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 45 H 0.04 0.75 8.06 -51.93 -0.42 0.33 16 46 H 0.17 1.06 7.72 -52.48 -0.41 0.65 16 47 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 388.56 15.07 5.86 5.86 Total: -1.00 -34.50 388.56 -8.56 -43.06 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -7.29 Total: -1.95 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.06 Total: 3.53 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.21 Total: -54.09 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.17 Total: -13.65 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.50 -8.56 -43.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714879310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.155 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds