Wall clock time and date at job start Tue Mar 31 2020 18:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42895 * 109.47637 * 2 1 4 4 C 1.35472 * 117.00657 * 179.97438 * 3 2 1 5 5 C 1.39641 * 119.97986 * 179.97438 * 4 3 2 6 6 N 1.31526 * 120.03760 * 180.02562 * 5 4 3 7 7 C 1.33209 * 119.99411 * 359.97438 * 6 5 4 8 8 C 1.47908 * 120.02846 * 180.02562 * 7 6 5 9 9 O 1.21542 * 120.00101 * 179.97438 * 8 7 6 10 10 N 1.34775 * 119.99781 * 359.97438 * 8 7 6 11 11 C 1.46497 * 119.99966 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.44823 * 34.97035 * 11 10 8 13 13 C 1.53034 * 109.46073 * 274.99788 * 11 10 8 14 14 C 1.53186 * 109.31870 * 301.34660 * 13 11 10 15 15 N 1.46934 * 108.77423 * 305.36752 * 14 13 11 16 16 C 1.36935 * 120.62706 * 233.62815 * 15 14 13 17 17 H 1.07997 * 120.00589 * 27.67548 * 16 15 14 18 18 C 1.38811 * 119.99982 * 207.67239 * 16 15 14 19 19 N 1.31628 * 120.00128 * 17.35388 * 18 16 15 20 20 Si 1.86800 * 120.00378 * 197.35272 * 18 16 15 21 21 H 1.48500 * 109.47088 * 59.99836 * 20 18 16 22 22 H 1.48499 * 109.47288 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47093 * 299.99945 * 20 18 16 24 24 C 1.46918 * 118.73973 * 53.60272 * 15 14 13 25 25 C 1.53041 * 109.45696 * 154.93265 * 11 10 8 26 26 H 1.09003 * 109.50009 * 178.60792 * 25 11 10 27 27 C 1.53001 * 109.49942 * 298.66925 * 25 11 10 28 28 C 1.39391 * 119.94832 * 0.27259 * 7 6 5 29 29 N 1.32079 * 119.96340 * 359.45912 * 28 7 6 30 30 H 1.09001 * 109.47430 * 300.00484 * 1 2 3 31 31 H 1.09004 * 109.47088 * 60.00490 * 1 2 3 32 32 H 1.09005 * 109.47132 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47430 * 239.99516 * 2 1 3 34 34 H 1.09004 * 109.47256 * 120.00038 * 2 1 3 35 35 H 1.07996 * 119.97532 * 0.02658 * 5 4 3 36 36 H 0.97008 * 119.99806 * 0.02562 * 10 8 7 37 37 H 1.09005 * 109.49818 * 181.39202 * 13 11 10 38 38 H 1.09004 * 109.52782 * 61.31623 * 13 11 10 39 39 H 1.09004 * 109.58549 * 65.14559 * 14 13 11 40 40 H 1.08996 * 109.59531 * 185.57923 * 14 13 11 41 41 H 0.96995 * 120.00288 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.58906 * 186.60545 * 24 15 14 43 43 H 1.09003 * 109.70491 * 66.25003 * 24 15 14 44 44 H 1.08998 * 109.46526 * 60.00347 * 27 25 11 45 45 H 1.09001 * 109.46810 * 180.02562 * 27 25 11 46 46 H 1.09001 * 109.47192 * 300.00536 * 27 25 11 47 47 H 1.08006 * 120.01752 * 179.70660 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3494 1.5247 0.0005 5 6 3.8827 2.8153 0.0000 6 7 5.1864 2.9890 0.0000 7 6 5.9988 1.9333 0.0011 8 6 7.4651 2.1278 0.0016 9 8 8.2059 1.1642 0.0030 10 7 7.9796 3.3734 0.0006 11 6 9.4319 3.5660 0.0018 12 1 9.9029 2.7782 -0.5859 13 6 9.9525 3.5102 1.4398 14 6 9.2628 4.5965 2.2710 15 7 9.4573 5.8936 1.6087 16 6 9.9862 6.9545 2.2942 17 1 10.6562 6.7818 3.1235 18 6 9.6614 8.2520 1.9231 19 7 8.6101 8.4757 1.1633 20 14 10.7162 9.6809 2.5021 21 1 12.1050 9.5034 2.0073 22 1 10.1605 10.9525 1.9733 23 1 10.7211 9.7230 3.9865 24 6 9.0741 6.0305 0.1970 25 6 9.7660 4.9281 -0.6109 26 1 10.8447 5.0827 -0.5879 27 6 9.2749 4.9708 -2.0594 28 6 5.4661 0.6452 -0.0036 29 7 4.1566 0.4730 0.0017 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.2241 3.6712 -0.0004 36 1 7.3883 4.1424 -0.0001 37 1 11.0295 3.6781 1.4436 38 1 9.7354 2.5316 1.8681 39 1 8.1970 4.3796 2.3435 40 1 9.7005 4.6264 3.2687 41 1 8.3829 9.3824 0.9043 42 1 9.3874 7.0066 -0.1737 43 1 7.9931 5.9320 0.0984 44 1 8.1960 4.8174 -2.0818 45 1 9.5135 5.9409 -2.4954 46 1 9.7658 4.1844 -2.6328 47 1 6.1238 -0.2115 -0.0076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946180259.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:55 Heat of formation + Delta-G solvation = -6.512088 kcal Electronic energy + Delta-G solvation = -29237.363827 eV Core-core repulsion = 25228.346370 eV Total energy + Delta-G solvation = -4009.017457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62679 -39.84841 -38.77703 -37.49953 -34.62213 -34.10274 -32.60320 -32.12891 -31.78948 -30.66226 -29.41109 -26.00750 -25.65091 -25.34874 -24.57308 -23.08190 -22.22335 -21.14522 -20.78451 -18.97443 -18.59997 -18.35677 -17.67408 -16.84934 -16.68551 -15.64836 -15.33458 -15.13334 -14.89390 -14.74682 -14.46125 -14.20982 -13.84645 -13.66666 -13.42852 -13.22229 -13.10832 -13.03518 -12.84208 -12.59185 -12.21985 -11.99806 -11.74708 -11.54861 -11.43752 -11.19827 -11.14568 -11.01549 -10.93010 -10.68477 -10.39785 -10.20025 -10.10795 -9.95442 -9.74398 -9.45258 -9.37333 -9.04582 -8.61747 -8.44361 -6.66828 -5.79081 -3.20799 0.29578 0.77910 2.44076 2.75039 3.28072 3.38731 3.44496 3.45961 3.66268 3.71526 3.94432 4.20709 4.49769 4.58191 4.60360 4.82126 4.93091 4.98837 5.20725 5.29743 5.30330 5.33623 5.40165 5.45567 5.57471 5.59468 5.68843 5.78075 5.85526 6.09658 6.17362 6.21964 6.35384 6.49170 6.54285 6.57302 6.65771 6.67949 6.78773 6.83332 6.94539 7.01109 7.31093 7.34724 7.62089 7.79240 7.85343 8.38870 8.44604 9.20890 9.84238 10.40910 11.29228 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.002763 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.654174 B =10130.264090 C =11005.939170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.294 6.294 4 C 0.293 3.707 5 C 0.049 3.951 6 N -0.371 5.371 7 C -0.012 4.012 8 C 0.576 3.424 9 O -0.544 6.544 10 N -0.686 5.686 11 C 0.158 3.842 12 H 0.075 0.925 13 C -0.145 4.145 14 C 0.147 3.853 15 N -0.591 5.591 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.177 3.823 25 C -0.128 4.128 26 H 0.079 0.921 27 C -0.140 4.140 28 C 0.154 3.846 29 N -0.503 5.503 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.184 0.816 36 H 0.414 0.586 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.017 0.983 40 H 0.052 0.948 41 H 0.254 0.746 42 H 0.091 0.909 43 H 0.018 0.982 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.044 0.956 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.066 -15.366 -5.402 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.199 6.199 4 C 0.109 3.891 5 C -0.118 4.118 6 N -0.088 5.088 7 C -0.151 4.151 8 C 0.359 3.641 9 O -0.422 6.422 10 N -0.337 5.337 11 C 0.054 3.946 12 H 0.094 0.906 13 C -0.186 4.186 14 C 0.020 3.980 15 N -0.314 5.314 16 C -0.381 4.381 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.210 1.210 24 C 0.051 3.949 25 C -0.148 4.148 26 H 0.098 0.902 27 C -0.198 4.198 28 C -0.006 4.006 29 N -0.233 5.233 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.201 0.799 36 H 0.252 0.748 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.036 0.964 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.790 -15.674 -5.431 20.351 hybrid contribution 0.132 0.902 0.328 0.968 sum -11.658 -14.772 -5.104 19.498 Atomic orbital electron populations 1.21830 0.92540 1.03131 1.03580 1.22757 0.95178 0.80547 1.02913 1.86244 1.15813 1.31343 1.86501 1.21285 0.85151 0.91777 0.90900 1.23027 0.91614 0.95146 1.02018 1.68449 1.03230 1.32559 1.04578 1.22115 0.95891 0.90973 1.06169 1.17433 0.85116 0.84156 0.77369 1.90767 1.59350 1.40336 1.51756 1.46059 1.09019 1.07588 1.71076 1.20997 0.78749 0.97881 0.96995 0.90646 1.22389 1.00925 0.99531 0.95713 1.20866 0.96356 0.86006 0.94732 1.44040 1.73704 1.07039 1.06570 1.19133 1.20424 0.84642 1.13941 0.91750 1.25019 0.96534 0.97649 1.00392 1.70014 1.24427 1.19974 1.40214 0.86382 0.80220 0.81839 0.78395 1.21061 1.21676 1.20959 1.20802 0.94719 0.96499 0.82885 1.22139 1.01996 0.95793 0.94914 0.90240 1.21728 1.00820 1.01074 0.96131 1.23509 0.89776 0.97815 0.89451 1.68242 1.05316 1.32515 1.17194 0.91413 0.91456 0.90082 0.91238 0.91205 0.79877 0.74763 0.91256 0.92509 0.96504 0.92913 0.93594 0.89085 0.96416 0.93109 0.92550 0.93703 0.79704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.15 0.38 -0.43 16 2 C 0.06 0.47 6.04 37.15 0.22 0.69 16 3 O -0.29 -2.94 10.12 -18.11 -0.18 -3.12 16 4 C 0.29 3.34 7.50 -16.70 -0.13 3.21 16 5 C 0.05 0.57 11.18 -17.16 -0.19 0.38 16 6 N -0.37 -5.20 9.69 -9.49 -0.09 -5.29 16 7 C -0.01 -0.18 6.74 -82.88 -0.56 -0.74 16 8 C 0.58 9.36 7.77 -12.30 -0.10 9.26 16 9 O -0.54 -9.70 15.99 5.33 0.09 -9.62 16 10 N -0.69 -11.50 3.59 -54.70 -0.20 -11.70 16 11 C 0.16 2.73 2.21 -67.89 -0.15 2.58 16 12 H 0.08 1.29 7.57 -51.93 -0.39 0.90 16 13 C -0.15 -2.64 5.77 -26.62 -0.15 -2.79 16 14 C 0.15 3.10 6.26 -3.71 -0.02 3.07 16 15 N -0.59 -14.36 2.99 -172.32 -0.52 -14.88 16 16 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 17 H 0.06 1.72 7.89 -52.49 -0.41 1.30 16 18 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 19 N -0.90 -25.47 11.19 55.49 0.62 -24.85 16 20 Si 0.90 21.43 29.59 -169.99 -5.03 16.41 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.18 3.98 4.30 -3.72 -0.02 3.96 16 25 C -0.13 -2.32 2.67 -90.50 -0.24 -2.56 16 26 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 27 C -0.14 -2.19 9.06 37.16 0.34 -1.85 16 28 C 0.15 1.91 10.76 -17.02 -0.18 1.72 16 29 N -0.50 -5.99 9.37 -12.76 -0.12 -6.11 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 34 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 35 H 0.18 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.41 7.26 6.08 -40.82 -0.25 7.01 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.02 0.37 7.74 -51.93 -0.40 -0.03 16 40 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.09 2.33 6.04 -51.93 -0.31 2.01 16 43 H 0.02 0.42 6.64 -51.93 -0.35 0.07 16 44 H 0.05 0.79 7.54 -51.93 -0.39 0.40 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.19 2.02 7.64 -52.48 -0.40 1.62 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -30.27 381.68 -7.81 -38.08 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.10 Total: 5.75 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -1.03 Total: 9.58 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -0.30 Total: -62.82 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.10 Total: -12.74 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.27 -7.81 -38.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946180259.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.564 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds