Wall clock time and date at job start Tue Mar 31 2020 18:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42895 * 109.47637 * 2 1 4 4 C 1.35472 * 117.00657 * 179.97438 * 3 2 1 5 5 C 1.39641 * 119.97986 * 179.97438 * 4 3 2 6 6 N 1.31526 * 120.03760 * 180.02562 * 5 4 3 7 7 C 1.33209 * 119.99411 * 359.97438 * 6 5 4 8 8 C 1.47908 * 120.02846 * 180.02562 * 7 6 5 9 9 O 1.21542 * 120.00101 * 179.97438 * 8 7 6 10 10 N 1.34775 * 119.99781 * 359.97438 * 8 7 6 11 11 C 1.46497 * 119.99966 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.44823 * 34.97035 * 11 10 8 13 13 C 1.53034 * 109.46073 * 274.99788 * 11 10 8 14 14 C 1.53186 * 109.31870 * 301.34660 * 13 11 10 15 15 N 1.46934 * 108.77423 * 305.36752 * 14 13 11 16 16 C 1.36935 * 120.62706 * 233.62815 * 15 14 13 17 17 H 1.07997 * 120.00589 * 27.67548 * 16 15 14 18 18 C 1.38811 * 119.99982 * 207.67239 * 16 15 14 19 19 N 1.31628 * 120.00128 * 17.35388 * 18 16 15 20 20 Si 1.86800 * 120.00378 * 197.35272 * 18 16 15 21 21 H 1.48500 * 109.47088 * 59.99836 * 20 18 16 22 22 H 1.48499 * 109.47288 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47093 * 299.99945 * 20 18 16 24 24 C 1.46918 * 118.73973 * 53.60272 * 15 14 13 25 25 C 1.53041 * 109.45696 * 154.93265 * 11 10 8 26 26 H 1.09003 * 109.50009 * 178.60792 * 25 11 10 27 27 C 1.53001 * 109.49942 * 298.66925 * 25 11 10 28 28 C 1.39391 * 119.94832 * 0.27259 * 7 6 5 29 29 N 1.32079 * 119.96340 * 359.45912 * 28 7 6 30 30 H 1.09001 * 109.47430 * 300.00484 * 1 2 3 31 31 H 1.09004 * 109.47088 * 60.00490 * 1 2 3 32 32 H 1.09005 * 109.47132 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47430 * 239.99516 * 2 1 3 34 34 H 1.09004 * 109.47256 * 120.00038 * 2 1 3 35 35 H 1.07996 * 119.97532 * 0.02658 * 5 4 3 36 36 H 0.97008 * 119.99806 * 0.02562 * 10 8 7 37 37 H 1.09005 * 109.49818 * 181.39202 * 13 11 10 38 38 H 1.09004 * 109.52782 * 61.31623 * 13 11 10 39 39 H 1.09004 * 109.58549 * 65.14559 * 14 13 11 40 40 H 1.08996 * 109.59531 * 185.57923 * 14 13 11 41 41 H 0.96995 * 120.00288 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.58906 * 186.60545 * 24 15 14 43 43 H 1.09003 * 109.70491 * 66.25003 * 24 15 14 44 44 H 1.08998 * 109.46526 * 60.00347 * 27 25 11 45 45 H 1.09001 * 109.46810 * 180.02562 * 27 25 11 46 46 H 1.09001 * 109.47192 * 300.00536 * 27 25 11 47 47 H 1.08006 * 120.01752 * 179.70660 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3494 1.5247 0.0005 5 6 3.8827 2.8153 0.0000 6 7 5.1864 2.9890 0.0000 7 6 5.9988 1.9333 0.0011 8 6 7.4651 2.1278 0.0016 9 8 8.2059 1.1642 0.0030 10 7 7.9796 3.3734 0.0006 11 6 9.4319 3.5660 0.0018 12 1 9.9029 2.7782 -0.5859 13 6 9.9525 3.5102 1.4398 14 6 9.2628 4.5965 2.2710 15 7 9.4573 5.8936 1.6087 16 6 9.9862 6.9545 2.2942 17 1 10.6562 6.7818 3.1235 18 6 9.6614 8.2520 1.9231 19 7 8.6101 8.4757 1.1633 20 14 10.7162 9.6809 2.5021 21 1 12.1050 9.5034 2.0073 22 1 10.1605 10.9525 1.9733 23 1 10.7211 9.7230 3.9865 24 6 9.0741 6.0305 0.1970 25 6 9.7660 4.9281 -0.6109 26 1 10.8447 5.0827 -0.5879 27 6 9.2749 4.9708 -2.0594 28 6 5.4661 0.6452 -0.0036 29 7 4.1566 0.4730 0.0017 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.2241 3.6712 -0.0004 36 1 7.3883 4.1424 -0.0001 37 1 11.0295 3.6781 1.4436 38 1 9.7354 2.5316 1.8681 39 1 8.1970 4.3796 2.3435 40 1 9.7005 4.6264 3.2687 41 1 8.3829 9.3824 0.9043 42 1 9.3874 7.0066 -0.1737 43 1 7.9931 5.9320 0.0984 44 1 8.1960 4.8174 -2.0818 45 1 9.5135 5.9409 -2.4954 46 1 9.7658 4.1844 -2.6328 47 1 6.1238 -0.2115 -0.0076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946180259.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:54 Heat of formation + Delta-G solvation = -26.890419 kcal Electronic energy + Delta-G solvation = -29238.247498 eV Core-core repulsion = 25228.346370 eV Total energy + Delta-G solvation = -4009.901128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.59614 -41.12905 -39.75802 -38.92406 -35.99512 -35.43157 -33.70643 -33.51593 -33.19000 -31.73507 -30.94755 -27.52138 -27.20809 -26.44142 -25.74052 -23.92812 -23.67945 -22.66937 -22.16280 -20.13508 -19.75504 -19.49502 -18.92723 -18.43978 -17.63333 -16.98368 -16.66881 -16.49014 -16.06939 -15.90556 -15.70300 -15.57129 -15.22554 -15.15924 -14.72390 -14.58001 -14.48364 -14.21003 -13.65568 -13.58477 -13.49393 -13.07618 -13.03447 -12.90897 -12.75957 -12.53277 -12.46102 -12.44660 -12.43388 -12.20760 -11.81627 -11.78673 -11.69054 -11.51006 -11.36113 -11.11725 -10.51717 -10.43309 -10.11243 -9.83043 -8.64219 -7.84458 -5.28855 -0.70059 -0.16948 1.48946 1.50792 1.57434 1.60503 1.63060 2.07912 2.53361 2.60722 2.81584 2.93424 3.27023 3.29725 3.67270 3.74955 3.86021 3.93682 4.04671 4.05966 4.16059 4.20523 4.35970 4.40073 4.44015 4.60147 4.63320 4.68734 4.75787 4.86419 4.93647 4.96086 4.97636 5.03518 5.10852 5.15152 5.21957 5.30981 5.37161 5.51622 5.57600 5.67617 5.79427 5.84662 5.88703 6.33394 6.41929 6.57963 7.08679 7.18058 7.88162 8.40118 9.21093 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.002763 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.654174 B =10130.264090 C =11005.939170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.295 6.295 4 C 0.300 3.700 5 C 0.050 3.950 6 N -0.392 5.392 7 C -0.033 4.033 8 C 0.579 3.421 9 O -0.561 6.561 10 N -0.689 5.689 11 C 0.164 3.836 12 H 0.087 0.913 13 C -0.134 4.134 14 C 0.148 3.852 15 N -0.607 5.607 16 C -0.264 4.264 17 H 0.063 0.937 18 C -0.046 4.046 19 N -0.929 5.929 20 Si 0.963 3.037 21 H -0.279 1.279 22 H -0.294 1.294 23 H -0.279 1.279 24 C 0.188 3.812 25 C -0.116 4.116 26 H 0.077 0.923 27 C -0.132 4.132 28 C 0.162 3.838 29 N -0.506 5.506 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.208 0.792 36 H 0.410 0.590 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.009 0.991 40 H 0.048 0.952 41 H 0.250 0.750 42 H 0.057 0.943 43 H 0.003 0.997 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.669 -16.640 -5.802 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.199 6.199 4 C 0.116 3.884 5 C -0.119 4.119 6 N -0.109 5.109 7 C -0.171 4.171 8 C 0.364 3.636 9 O -0.441 6.441 10 N -0.339 5.339 11 C 0.059 3.941 12 H 0.105 0.895 13 C -0.174 4.174 14 C 0.022 3.978 15 N -0.330 5.330 16 C -0.394 4.394 17 H 0.081 0.919 18 C -0.242 4.242 19 N -0.574 5.574 20 Si 0.792 3.208 21 H -0.205 1.205 22 H -0.220 1.220 23 H -0.205 1.205 24 C 0.062 3.938 25 C -0.136 4.136 26 H 0.095 0.905 27 C -0.190 4.190 28 C 0.003 3.997 29 N -0.236 5.236 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.224 0.776 36 H 0.247 0.753 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.027 0.973 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.021 0.979 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -12.390 -16.987 -5.831 21.819 hybrid contribution 0.158 1.232 0.490 1.335 sum -12.232 -15.755 -5.340 20.648 Atomic orbital electron populations 1.21852 0.90583 1.04490 1.03630 1.23027 0.96694 0.79345 1.03001 1.86269 1.14811 1.32958 1.85823 1.21414 0.85758 0.91674 0.89585 1.23406 0.91092 0.96182 1.01172 1.68386 1.04289 1.32964 1.05246 1.21847 0.94829 0.91825 1.08618 1.17645 0.85999 0.83498 0.76435 1.90746 1.60131 1.40613 1.52594 1.46021 1.08575 1.07800 1.71527 1.20898 0.79361 0.97429 0.96378 0.89475 1.22251 1.00771 0.98547 0.95812 1.20905 0.96172 0.85639 0.95035 1.44278 1.73771 1.07513 1.07434 1.19420 1.20252 0.85699 1.14008 0.91941 1.25710 0.97613 0.99805 1.01049 1.70158 1.25781 1.19999 1.41503 0.85408 0.78709 0.78728 0.77961 1.20512 1.22014 1.20502 1.20594 0.94113 0.96411 0.82680 1.21945 1.01264 0.94608 0.95818 0.90498 1.21659 1.00934 1.01913 0.94484 1.23648 0.90117 0.97466 0.88438 1.68313 1.05040 1.32629 1.17570 0.91440 0.91302 0.88070 0.91030 0.91228 0.77586 0.75266 0.90843 0.91622 0.97318 0.93299 0.94083 0.92425 0.97905 0.93140 0.92604 0.91456 0.78449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 71.98 0.74 -0.50 16 2 C 0.05 0.72 6.04 71.98 0.43 1.16 16 3 O -0.29 -5.36 10.12 -87.71 -0.89 -6.24 16 4 C 0.30 6.40 7.50 84.92 0.64 7.04 16 5 C 0.05 1.10 11.18 85.08 0.95 2.05 16 6 N -0.39 -10.77 9.69 -183.92 -1.78 -12.55 16 7 C -0.03 -0.93 6.74 41.78 0.28 -0.65 16 8 C 0.58 18.42 7.77 86.81 0.67 19.10 16 9 O -0.56 -19.39 15.99 -3.85 -0.06 -19.45 16 10 N -0.69 -22.79 3.59 -445.25 -1.60 -24.38 16 11 C 0.16 5.50 2.21 45.02 0.10 5.60 16 12 H 0.09 2.80 7.57 -2.39 -0.02 2.78 16 13 C -0.13 -4.74 5.77 30.67 0.18 -4.57 16 14 C 0.15 6.28 6.26 86.36 0.54 6.82 16 15 N -0.61 -29.91 2.99 -699.10 -2.09 -32.01 16 16 C -0.26 -14.36 9.58 84.03 0.81 -13.56 16 17 H 0.06 3.36 7.89 -2.91 -0.02 3.33 16 18 C -0.05 -2.53 4.91 84.86 0.42 -2.11 16 19 N -0.93 -53.61 11.19 21.65 0.24 -53.37 16 20 Si 0.96 44.50 29.59 68.60 2.03 46.53 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 24 C 0.19 8.60 4.30 86.36 0.37 8.98 16 25 C -0.12 -4.15 2.67 -10.72 -0.03 -4.17 16 26 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 27 C -0.13 -3.99 9.06 71.98 0.65 -3.34 16 28 C 0.16 3.84 10.76 84.93 0.91 4.75 16 29 N -0.51 -11.30 9.37 -307.09 -2.88 -14.18 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.07 0.94 8.11 -2.39 -0.02 0.93 16 34 H 0.07 0.95 8.11 -2.38 -0.02 0.93 16 35 H 0.21 3.38 8.06 -2.91 -0.02 3.36 16 36 H 0.41 14.47 6.08 -92.70 -0.56 13.90 16 37 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 38 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.01 0.39 7.74 -2.38 -0.02 0.37 16 40 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 41 H 0.25 14.06 8.31 -92.71 -0.77 13.28 16 42 H 0.06 3.03 6.04 -2.38 -0.01 3.02 16 43 H 0.00 0.15 6.64 -2.39 -0.02 0.13 16 44 H 0.05 1.52 7.54 -2.39 -0.02 1.51 16 45 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.20 4.05 7.64 -2.91 -0.02 4.03 16 Total: -1.00 -64.68 381.68 1.06 -63.63 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.42 Total: 25.44 kcal Atomic # 6 Polarization: 18.92 SS G_CDS: 7.67 Total: 26.59 kcal Atomic # 7 Polarization: -128.38 SS G_CDS: -8.11 Total: -136.49 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.95 Total: -25.70 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -64.68 1.06 -63.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946180259.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.735 kcal (2) G-P(sol) polarization free energy of solvation -64.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds