Wall clock time and date at job start Tue Mar 31 2020 18:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.46935 * 2 1 4 4 C 1.36006 * 116.99820 * 179.97438 * 3 2 1 5 5 C 1.39682 * 125.67393 * 179.97438 * 4 3 2 6 6 C 1.37984 * 107.64031 * 180.26251 * 5 4 3 7 7 C 1.47168 * 126.43440 * 179.76312 * 6 5 4 8 8 O 1.21623 * 120.00305 * 8.44646 * 7 6 5 9 9 N 1.34777 * 119.99732 * 188.45612 * 7 6 5 10 10 C 1.44786 * 120.18118 * 186.45759 * 9 7 6 11 11 C 1.51003 * 112.51759 * 264.67370 * 10 9 7 12 12 C 1.51307 * 113.25073 * 285.42664 * 11 10 9 13 13 H 1.09001 * 112.00188 * 185.60196 * 12 11 10 14 14 C 1.54714 * 106.48601 * 307.57767 * 12 11 10 15 15 C 1.52660 * 104.14337 * 88.80069 * 14 12 11 16 16 C 1.50866 * 106.06199 * 12.10070 * 15 14 12 17 17 H 1.09004 * 106.52620 * 121.64395 * 16 15 14 18 18 C 1.49816 * 120.18110 * 6.72956 * 9 7 6 19 19 N 1.48066 * 109.33689 * 7.26642 * 16 15 14 20 20 C 1.36931 * 127.84027 * 155.65381 * 19 16 15 21 21 H 1.08008 * 119.99792 * 179.97438 * 20 19 16 22 22 C 1.38804 * 120.00437 * 359.96892 * 20 19 16 23 23 N 1.31621 * 119.99933 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00316 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47174 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47076 * 120.00114 * 24 22 20 27 27 H 1.48495 * 109.47036 * 239.99991 * 24 22 20 28 28 N 1.36666 * 107.12739 * 359.61119 * 6 5 4 29 29 H 0.97000 * 126.10246 * 180.14014 * 28 6 5 30 30 N 1.31223 * 125.66995 * 0.02562 * 4 3 2 31 31 H 1.09005 * 109.46898 * 60.00263 * 1 2 3 32 32 H 1.08996 * 109.47412 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47575 * 300.00714 * 1 2 3 34 34 H 1.08995 * 109.46973 * 239.99362 * 2 1 3 35 35 H 1.09001 * 109.46687 * 119.99267 * 2 1 3 36 36 H 1.08000 * 126.18207 * 0.02562 * 5 4 3 37 37 H 1.09002 * 108.93192 * 25.28181 * 10 9 7 38 38 H 1.08996 * 108.93914 * 143.86873 * 10 9 7 39 39 H 1.09007 * 108.79990 * 164.40618 * 11 10 9 40 40 H 1.09000 * 108.56296 * 46.28716 * 11 10 9 41 41 H 1.09002 * 110.45301 * 207.83746 * 14 12 11 42 42 H 1.08998 * 110.44903 * 330.38875 * 14 12 11 43 43 H 1.09003 * 109.97282 * 252.85594 * 15 14 12 44 44 H 1.09005 * 109.82714 * 131.26546 * 15 14 12 45 45 H 1.09005 * 109.54294 * 270.53310 * 18 9 7 46 46 H 1.08993 * 109.54621 * 30.80816 * 18 9 7 47 47 H 0.97002 * 120.00243 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.0135 2.7571 0.0001 6 6 5.3702 2.5055 -0.0051 7 6 6.4454 3.5104 -0.0122 8 8 6.1791 4.6872 0.1407 9 7 7.7253 3.1265 -0.1884 10 6 8.7987 4.0893 -0.0575 11 6 9.2155 4.6749 -1.3855 12 6 10.0252 3.7177 -2.2326 13 1 10.3977 4.1911 -3.1410 14 6 11.1861 3.2167 -1.3410 15 6 10.6132 1.9891 -0.6374 16 6 9.3240 1.6633 -1.3501 17 1 9.4236 0.6428 -1.7202 18 6 8.0447 1.7024 -0.5269 19 7 9.1935 2.5260 -2.5463 20 6 8.4702 2.2820 -3.6831 21 1 8.4641 3.0056 -4.4850 22 6 7.7450 1.1048 -3.8051 23 7 7.7521 0.2232 -2.8278 24 14 6.7588 0.7717 -5.3563 25 1 6.9149 1.9107 -6.2962 26 1 7.2526 -0.4725 -5.9991 27 1 5.3245 0.6124 -5.0063 28 7 5.5279 1.1480 0.0011 29 1 6.3723 0.6707 0.0014 30 7 4.2529 0.5689 0.0006 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 3.5456 3.7305 -0.0003 37 1 8.4698 4.8992 0.5937 38 1 9.6597 3.5996 0.3973 39 1 9.8102 5.5701 -1.2036 40 1 8.3187 4.9575 -1.9369 41 1 12.0469 2.9465 -1.9526 42 1 11.4608 3.9775 -0.6103 43 1 10.4184 2.2175 0.4105 44 1 11.3115 1.1561 -0.7198 45 1 8.1843 1.1319 0.3914 46 1 7.2263 1.2724 -1.1041 47 1 7.2450 -0.5993 -2.9129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045800542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:47 Heat of formation + Delta-G solvation = 67.362369 kcal Electronic energy + Delta-G solvation = -31045.205052 eV Core-core repulsion = 27039.391031 eV Total energy + Delta-G solvation = -4005.814020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.18225 -39.91557 -38.35453 -37.73244 -34.36909 -33.46340 -32.03595 -31.68234 -30.21266 -29.77603 -29.62040 -27.50680 -26.09994 -24.24497 -23.85931 -22.98367 -21.24397 -20.98480 -19.89065 -19.60477 -19.03073 -17.69917 -16.93261 -16.42282 -16.17929 -15.71251 -15.51872 -15.07442 -14.86935 -14.71663 -14.06977 -14.01502 -13.79297 -13.43255 -13.18149 -13.00684 -12.73196 -12.64979 -12.53650 -12.12403 -12.07109 -11.64416 -11.60641 -11.40763 -11.30709 -11.03009 -10.95238 -10.88859 -10.78036 -10.55061 -10.31713 -10.12423 -9.85656 -9.76091 -9.65705 -9.32455 -8.85979 -8.75847 -8.36230 -8.00662 -7.07093 -5.92441 -3.27507 1.52130 2.78480 2.89076 3.19139 3.31205 3.38417 3.40433 3.62835 3.78310 4.33537 4.78972 4.95862 4.97144 5.08064 5.10234 5.20661 5.31589 5.33899 5.45718 5.53056 5.57023 5.59211 5.71120 5.76496 5.77977 5.87293 5.95152 6.01597 6.03745 6.05422 6.10775 6.21533 6.34566 6.36232 6.47466 6.54130 6.59136 6.73687 6.93696 7.06570 7.13886 7.31195 7.37059 7.54281 7.60140 7.78600 7.89860 8.04795 8.54115 8.98621 9.58035 10.29822 11.16446 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.004810 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.778702 B = 5819.793492 C = 7206.551415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.292 6.292 4 C 0.252 3.748 5 C -0.210 4.210 6 C 0.078 3.922 7 C 0.581 3.419 8 O -0.539 6.539 9 N -0.582 5.582 10 C 0.117 3.883 11 C -0.148 4.148 12 C 0.149 3.851 13 H 0.065 0.935 14 C -0.131 4.131 15 C -0.125 4.125 16 C 0.148 3.852 17 H 0.107 0.893 18 C 0.085 3.915 19 N -0.580 5.580 20 C -0.198 4.198 21 H 0.081 0.919 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.913 3.087 25 H -0.281 1.281 26 H -0.290 1.290 27 H -0.290 1.290 28 N -0.433 5.433 29 H 0.453 0.547 30 N -0.325 5.325 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.160 0.840 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.039 0.961 46 H 0.135 0.865 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 0.345 7.813 7.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 O -0.197 6.197 4 C 0.050 3.950 5 C -0.241 4.241 6 C -0.054 4.054 7 C 0.366 3.634 8 O -0.416 6.416 9 N -0.313 5.313 10 C -0.006 4.006 11 C -0.188 4.188 12 C 0.041 3.959 13 H 0.083 0.917 14 C -0.170 4.170 15 C -0.163 4.163 16 C 0.040 3.960 17 H 0.124 0.876 18 C -0.038 4.038 19 N -0.302 5.302 20 C -0.326 4.326 21 H 0.099 0.901 22 C -0.206 4.206 23 N -0.582 5.582 24 Si 0.744 3.256 25 H -0.206 1.206 26 H -0.217 1.217 27 H -0.217 1.217 28 N -0.158 5.158 29 H 0.309 0.691 30 N -0.167 5.167 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.178 0.822 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.057 0.943 46 H 0.152 0.848 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.882 -0.248 7.719 7.949 hybrid contribution -0.284 0.067 -0.896 0.942 sum -2.166 -0.181 6.823 7.161 Atomic orbital electron populations 1.21781 0.92989 1.02681 1.03326 1.22667 0.95114 0.81649 1.02250 1.86261 1.14270 1.29268 1.89902 1.20154 0.84104 0.92085 0.98688 1.20891 0.89754 0.97823 1.15659 1.21254 0.95195 0.84749 1.04240 1.17085 0.81855 0.86673 0.77739 1.90765 1.82601 1.16688 1.51582 1.48386 1.04616 1.11752 1.66586 1.20804 0.89966 0.92194 0.97620 1.21847 1.01267 0.98577 0.97158 1.21221 0.90332 0.89354 0.94954 0.91733 1.22412 0.98515 0.97369 0.98713 1.21700 0.97917 0.98012 0.98671 1.20453 0.88564 1.00158 0.86799 0.87576 1.24034 1.04337 0.78183 0.97243 1.45035 1.54517 1.16099 1.14587 1.19141 1.19446 1.01874 0.92130 0.90070 1.24610 1.00618 0.96863 0.98528 1.69611 1.46631 1.10480 1.31479 0.85993 0.79658 0.77773 0.82172 1.20596 1.21702 1.21725 1.47378 1.07040 1.03752 1.57621 0.69093 1.77225 0.88809 1.20745 1.29935 0.91578 0.90462 0.91657 0.91786 0.91928 0.82224 0.91255 0.90060 0.92418 0.91951 0.92197 0.91937 0.92182 0.91987 0.94320 0.84790 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.06 0.77 6.33 37.16 0.24 1.00 16 3 O -0.29 -4.80 10.22 -19.76 -0.20 -5.01 16 4 C 0.25 4.69 7.85 -17.27 -0.14 4.56 16 5 C -0.21 -4.00 10.64 -39.14 -0.42 -4.42 16 6 C 0.08 1.54 6.69 -82.18 -0.55 0.99 16 7 C 0.58 11.95 7.65 -12.64 -0.10 11.85 16 8 O -0.54 -11.98 16.46 5.26 0.09 -11.89 16 9 N -0.58 -11.08 2.88 -175.34 -0.50 -11.59 16 10 C 0.12 1.99 5.06 -5.96 -0.03 1.96 16 11 C -0.15 -2.58 5.00 -28.59 -0.14 -2.72 16 12 C 0.15 2.73 4.08 -66.68 -0.27 2.46 16 13 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 14 C -0.13 -1.98 6.00 -26.00 -0.16 -2.14 16 15 C -0.12 -1.97 5.68 -27.98 -0.16 -2.13 16 16 C 0.15 2.93 1.99 -68.56 -0.14 2.79 16 17 H 0.11 2.44 6.15 -51.93 -0.32 2.12 16 18 C 0.08 1.62 4.10 -2.61 -0.01 1.61 16 19 N -0.58 -12.83 2.69 -156.95 -0.42 -13.25 16 20 C -0.20 -5.00 10.40 -15.06 -0.16 -5.15 16 21 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 22 C -0.01 -0.32 5.47 -17.43 -0.10 -0.41 16 23 N -0.93 -23.26 8.14 55.49 0.45 -22.81 16 24 Si 0.91 21.41 29.55 -169.99 -5.02 16.38 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 28 N -0.43 -8.24 6.37 33.41 0.21 -8.03 16 29 H 0.45 8.27 5.10 -182.65 -0.93 7.34 16 30 N -0.32 -6.20 12.05 30.46 0.37 -5.84 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.16 2.82 8.06 -52.49 -0.42 2.39 16 37 H 0.07 1.17 7.32 -51.93 -0.38 0.79 16 38 H 0.08 1.22 3.88 -51.93 -0.20 1.02 16 39 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.80 7.38 -51.93 -0.38 0.41 16 43 H 0.06 0.85 6.07 -51.93 -0.32 0.53 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.04 0.64 7.69 -51.93 -0.40 0.25 16 46 H 0.14 2.89 3.20 -51.93 -0.17 2.73 16 47 H 0.25 6.37 8.31 -40.82 -0.34 6.03 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -28.42 359.31 -8.65 -37.08 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -7.29 Total: 10.36 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -1.74 Total: 9.18 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: 0.11 Total: -61.52 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.12 Total: -16.90 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.42 -8.65 -37.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045800542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.439 kcal (2) G-P(sol) polarization free energy of solvation -28.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds