Wall clock time and date at job start Tue Mar 31 2020 18:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.46935 * 2 1 4 4 C 1.36006 * 116.99820 * 179.97438 * 3 2 1 5 5 C 1.39682 * 125.67393 * 179.97438 * 4 3 2 6 6 C 1.37984 * 107.64031 * 180.26251 * 5 4 3 7 7 C 1.47168 * 126.43440 * 179.76312 * 6 5 4 8 8 O 1.21623 * 120.00305 * 8.44646 * 7 6 5 9 9 N 1.34777 * 119.99732 * 188.45612 * 7 6 5 10 10 C 1.44786 * 120.18118 * 186.45759 * 9 7 6 11 11 C 1.51003 * 112.51759 * 264.67370 * 10 9 7 12 12 C 1.51307 * 113.25073 * 285.42664 * 11 10 9 13 13 H 1.09001 * 112.00188 * 185.60196 * 12 11 10 14 14 C 1.54714 * 106.48601 * 307.57767 * 12 11 10 15 15 C 1.52660 * 104.14337 * 88.80069 * 14 12 11 16 16 C 1.50866 * 106.06199 * 12.10070 * 15 14 12 17 17 H 1.09004 * 106.52620 * 121.64395 * 16 15 14 18 18 C 1.49816 * 120.18110 * 6.72956 * 9 7 6 19 19 N 1.48066 * 109.33689 * 7.26642 * 16 15 14 20 20 C 1.36931 * 127.84027 * 155.65381 * 19 16 15 21 21 H 1.08008 * 119.99792 * 179.97438 * 20 19 16 22 22 C 1.38804 * 120.00437 * 359.96892 * 20 19 16 23 23 N 1.31621 * 119.99933 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00316 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47174 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47076 * 120.00114 * 24 22 20 27 27 H 1.48495 * 109.47036 * 239.99991 * 24 22 20 28 28 N 1.36666 * 107.12739 * 359.61119 * 6 5 4 29 29 H 0.97000 * 126.10246 * 180.14014 * 28 6 5 30 30 N 1.31223 * 125.66995 * 0.02562 * 4 3 2 31 31 H 1.09005 * 109.46898 * 60.00263 * 1 2 3 32 32 H 1.08996 * 109.47412 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47575 * 300.00714 * 1 2 3 34 34 H 1.08995 * 109.46973 * 239.99362 * 2 1 3 35 35 H 1.09001 * 109.46687 * 119.99267 * 2 1 3 36 36 H 1.08000 * 126.18207 * 0.02562 * 5 4 3 37 37 H 1.09002 * 108.93192 * 25.28181 * 10 9 7 38 38 H 1.08996 * 108.93914 * 143.86873 * 10 9 7 39 39 H 1.09007 * 108.79990 * 164.40618 * 11 10 9 40 40 H 1.09000 * 108.56296 * 46.28716 * 11 10 9 41 41 H 1.09002 * 110.45301 * 207.83746 * 14 12 11 42 42 H 1.08998 * 110.44903 * 330.38875 * 14 12 11 43 43 H 1.09003 * 109.97282 * 252.85594 * 15 14 12 44 44 H 1.09005 * 109.82714 * 131.26546 * 15 14 12 45 45 H 1.09005 * 109.54294 * 270.53310 * 18 9 7 46 46 H 1.08993 * 109.54621 * 30.80816 * 18 9 7 47 47 H 0.97002 * 120.00243 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.0135 2.7571 0.0001 6 6 5.3702 2.5055 -0.0051 7 6 6.4454 3.5104 -0.0122 8 8 6.1791 4.6872 0.1407 9 7 7.7253 3.1265 -0.1884 10 6 8.7987 4.0893 -0.0575 11 6 9.2155 4.6749 -1.3855 12 6 10.0252 3.7177 -2.2326 13 1 10.3977 4.1911 -3.1410 14 6 11.1861 3.2167 -1.3410 15 6 10.6132 1.9891 -0.6374 16 6 9.3240 1.6633 -1.3501 17 1 9.4236 0.6428 -1.7202 18 6 8.0447 1.7024 -0.5269 19 7 9.1935 2.5260 -2.5463 20 6 8.4702 2.2820 -3.6831 21 1 8.4641 3.0056 -4.4850 22 6 7.7450 1.1048 -3.8051 23 7 7.7521 0.2232 -2.8278 24 14 6.7588 0.7717 -5.3563 25 1 6.9149 1.9107 -6.2962 26 1 7.2526 -0.4725 -5.9991 27 1 5.3245 0.6124 -5.0063 28 7 5.5279 1.1480 0.0011 29 1 6.3723 0.6707 0.0014 30 7 4.2529 0.5689 0.0006 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 3.5456 3.7305 -0.0003 37 1 8.4698 4.8992 0.5937 38 1 9.6597 3.5996 0.3973 39 1 9.8102 5.5701 -1.2036 40 1 8.3187 4.9575 -1.9369 41 1 12.0469 2.9465 -1.9526 42 1 11.4608 3.9775 -0.6103 43 1 10.4184 2.2175 0.4105 44 1 11.3115 1.1561 -0.7198 45 1 8.1843 1.1319 0.3914 46 1 7.2263 1.2724 -1.1041 47 1 7.2450 -0.5993 -2.9129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045800542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:46 Heat of formation + Delta-G solvation = 48.678242 kcal Electronic energy + Delta-G solvation = -31046.015256 eV Core-core repulsion = 27039.391031 eV Total energy + Delta-G solvation = -4006.624225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.66672 -41.37354 -39.78167 -39.15421 -35.91369 -35.14943 -33.42629 -32.89844 -31.68866 -31.27794 -31.15376 -28.95897 -27.61488 -25.85759 -25.32269 -24.18995 -22.59030 -22.38221 -21.34526 -21.18463 -20.51056 -19.27089 -18.39593 -17.90419 -17.43906 -17.23962 -16.96001 -16.79122 -16.42307 -16.12782 -15.74011 -15.35754 -15.16075 -14.89443 -14.65941 -14.54064 -14.24202 -13.82210 -13.56646 -13.51905 -13.42875 -13.14344 -13.04818 -12.82846 -12.70614 -12.67716 -12.54576 -12.36837 -12.02198 -11.98151 -11.88020 -11.66202 -11.50008 -11.31468 -11.22611 -10.78713 -10.58165 -10.27288 -9.81911 -9.51389 -8.83349 -7.82974 -5.15554 -0.01789 1.37192 1.38732 1.41141 1.44763 1.48346 1.73265 2.14117 2.34089 2.46142 3.25812 3.36053 3.57253 3.58525 3.94414 4.02137 4.08994 4.10573 4.17036 4.23818 4.28613 4.35868 4.37846 4.45348 4.49107 4.61031 4.67906 4.74158 4.77201 4.90811 4.91916 5.00197 5.02524 5.14823 5.20101 5.21768 5.26161 5.35469 5.49181 5.52704 5.68734 5.76584 5.78337 5.86839 6.18896 6.24178 6.30285 6.43554 6.98042 7.13299 7.75535 8.48892 9.21368 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.004810 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.778702 B = 5819.793492 C = 7206.551415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.297 6.297 4 C 0.251 3.749 5 C -0.219 4.219 6 C 0.065 3.935 7 C 0.575 3.425 8 O -0.563 6.563 9 N -0.577 5.577 10 C 0.111 3.889 11 C -0.139 4.139 12 C 0.138 3.862 13 H 0.058 0.942 14 C -0.119 4.119 15 C -0.120 4.120 16 C 0.150 3.850 17 H 0.072 0.928 18 C 0.083 3.917 19 N -0.600 5.600 20 C -0.206 4.206 21 H 0.068 0.932 22 C -0.048 4.048 23 N -0.929 5.929 24 Si 0.950 3.050 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.307 1.307 28 N -0.430 5.430 29 H 0.455 0.545 30 N -0.333 5.333 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.169 0.831 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.019 0.981 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.112 0.888 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 0.524 9.341 9.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.202 6.202 4 C 0.049 3.951 5 C -0.250 4.250 6 C -0.067 4.067 7 C 0.361 3.639 8 O -0.442 6.442 9 N -0.307 5.307 10 C -0.011 4.011 11 C -0.179 4.179 12 C 0.031 3.969 13 H 0.076 0.924 14 C -0.157 4.157 15 C -0.158 4.158 16 C 0.044 3.956 17 H 0.090 0.910 18 C -0.039 4.039 19 N -0.323 5.323 20 C -0.335 4.335 21 H 0.086 0.914 22 C -0.241 4.241 23 N -0.580 5.580 24 Si 0.782 3.218 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.235 1.235 28 N -0.155 5.155 29 H 0.311 0.689 30 N -0.176 5.176 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.186 0.814 37 H 0.092 0.908 38 H 0.129 0.871 39 H 0.110 0.890 40 H 0.038 0.962 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.129 0.871 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.844 -0.069 9.254 9.293 hybrid contribution -0.623 0.005 -1.411 1.542 sum -1.468 -0.064 7.843 7.979 Atomic orbital electron populations 1.21807 0.90079 1.04486 1.03625 1.22993 0.97366 0.80074 1.02069 1.86283 1.12923 1.31417 1.89582 1.20282 0.84998 0.91773 0.98062 1.21119 0.89817 0.98555 1.15520 1.21309 0.95469 0.85021 1.04915 1.17227 0.82466 0.86481 0.77717 1.90738 1.82992 1.17466 1.53007 1.48448 1.04644 1.12100 1.65538 1.21041 0.90260 0.92268 0.97487 1.21768 0.99774 0.99715 0.96637 1.21460 0.91239 0.88484 0.95674 0.92414 1.22356 0.96931 0.97715 0.98703 1.21669 0.95698 0.98870 0.99562 1.20510 0.90598 0.98040 0.86500 0.90997 1.23866 1.03357 0.78465 0.98230 1.45195 1.54570 1.18023 1.14501 1.19181 1.19707 1.01416 0.93203 0.91375 1.25001 1.01773 0.97417 0.99955 1.69763 1.46592 1.10080 1.31543 0.85405 0.77883 0.77467 0.81000 1.20433 1.21777 1.23548 1.47347 1.07154 1.03480 1.57567 0.68883 1.77194 0.88948 1.21050 1.30402 0.91688 0.87865 0.90924 0.92705 0.91385 0.81374 0.90828 0.87109 0.88954 0.96174 0.91606 0.88375 0.89570 0.90958 0.91456 0.87107 0.94432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 10.28 71.98 0.74 -1.77 16 2 C 0.05 1.27 6.33 71.98 0.46 1.72 16 3 O -0.30 -9.68 10.22 -93.61 -0.96 -10.64 16 4 C 0.25 9.38 7.85 85.13 0.67 10.05 16 5 C -0.22 -8.41 10.64 22.56 0.24 -8.17 16 6 C 0.06 2.60 6.69 40.68 0.27 2.87 16 7 C 0.58 23.59 7.65 86.59 0.66 24.25 16 8 O -0.56 -25.03 16.46 -4.11 -0.07 -25.09 16 9 N -0.58 -21.29 2.88 -826.89 -2.38 -23.67 16 10 C 0.11 3.48 5.06 86.05 0.44 3.92 16 11 C -0.14 -4.56 5.00 29.39 0.15 -4.42 16 12 C 0.14 4.80 4.08 44.60 0.18 4.98 16 13 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 14 C -0.12 -3.10 6.00 31.07 0.19 -2.91 16 15 C -0.12 -3.36 5.68 29.79 0.17 -3.19 16 16 C 0.15 5.77 1.99 43.72 0.09 5.85 16 17 H 0.07 3.28 6.15 -2.39 -0.01 3.26 16 18 C 0.08 3.11 4.10 85.46 0.35 3.46 16 19 N -0.60 -26.31 2.69 -650.46 -1.75 -28.06 16 20 C -0.21 -10.55 10.40 84.03 0.87 -9.68 16 21 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 22 C -0.05 -2.50 5.47 84.86 0.46 -2.04 16 23 N -0.93 -47.12 8.14 21.65 0.18 -46.94 16 24 Si 0.95 44.92 29.55 68.60 2.03 46.95 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 26 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 27 H -0.31 -15.27 7.11 99.48 0.71 -14.57 16 28 N -0.43 -16.46 6.37 -48.20 -0.31 -16.77 16 29 H 0.45 16.62 5.10 -213.36 -1.09 15.53 16 30 N -0.33 -12.77 12.05 -170.75 -2.06 -14.83 16 31 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.17 6.00 8.06 -2.91 -0.02 5.98 16 37 H 0.07 2.28 7.32 -2.39 -0.02 2.26 16 38 H 0.11 2.81 3.88 -2.39 -0.01 2.80 16 39 H 0.09 2.39 8.14 -2.38 -0.02 2.38 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.10 1.92 7.38 -2.39 -0.02 1.90 16 43 H 0.09 1.98 6.07 -2.39 -0.01 1.97 16 44 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 45 H 0.07 2.11 7.69 -2.38 -0.02 2.09 16 46 H 0.11 4.80 3.20 -2.39 -0.01 4.79 16 47 H 0.25 12.58 8.31 -92.71 -0.77 11.81 16 Total: -1.00 -63.03 359.31 0.54 -62.49 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -0.08 Total: 31.62 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: 5.93 Total: 24.94 kcal Atomic # 7 Polarization: -123.95 SS G_CDS: -6.31 Total: -130.27 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -1.02 Total: -35.73 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -63.03 0.54 -62.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045800542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.168 kcal (2) G-P(sol) polarization free energy of solvation -63.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds