Wall clock time and date at job start Tue Mar 31 2020 18:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.28446 * 125.19959 * 2 1 4 4 C 1.31066 * 110.97137 * 180.31089 * 3 2 1 5 5 C 1.39542 * 107.59602 * 359.73324 * 4 3 2 6 6 C 1.36668 * 125.19822 * 179.83577 * 2 1 3 7 7 C 1.47169 * 126.93798 * 359.95740 * 6 2 1 8 8 O 1.21626 * 119.99959 * 5.52061 * 7 6 2 9 9 N 1.34777 * 119.99595 * 185.52671 * 7 6 2 10 10 C 1.46503 * 119.99624 * 174.69007 * 9 7 6 11 11 C 1.52997 * 109.46972 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.68100 * 301.70251 * 11 10 9 13 13 C 1.53297 * 109.68252 * 181.14190 * 11 10 9 14 14 O 1.42955 * 109.22532 * 187.97578 * 13 11 10 15 15 C 1.42956 * 114.17030 * 62.58318 * 14 13 11 16 16 C 1.53720 * 109.14475 * 297.29000 * 15 14 13 17 17 N 1.47147 * 108.16332 * 52.53580 * 16 15 14 18 18 C 1.36942 * 120.98467 * 129.43232 * 17 16 15 19 19 H 1.08004 * 120.00071 * 215.22796 * 18 17 16 20 20 C 1.38806 * 119.99761 * 35.21956 * 18 17 16 21 21 N 1.31613 * 120.00204 * 358.75614 * 20 18 17 22 22 Si 1.86798 * 119.99798 * 178.75659 * 20 18 17 23 23 H 1.48506 * 109.47001 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.47195 * 300.00121 * 22 20 18 25 25 H 1.48503 * 109.47329 * 60.00030 * 22 20 18 26 26 C 1.50855 * 109.87868 * 179.97438 * 5 4 3 27 27 C 1.54420 * 105.17505 * 342.97084 * 26 5 4 28 28 C 1.51267 * 143.02835 * 179.75709 * 4 3 2 29 29 H 1.08998 * 109.47112 * 273.90096 * 1 2 3 30 30 H 1.08994 * 109.47633 * 33.90337 * 1 2 3 31 31 H 1.09008 * 109.47286 * 153.90591 * 1 2 3 32 32 H 0.97001 * 120.00066 * 354.68144 * 9 7 6 33 33 H 1.08993 * 109.47186 * 59.99519 * 10 9 7 34 34 H 1.08999 * 109.46616 * 299.99521 * 10 9 7 35 35 H 1.09004 * 109.51328 * 307.90011 * 13 11 10 36 36 H 1.08997 * 109.50882 * 67.99710 * 13 11 10 37 37 H 1.08996 * 109.51331 * 57.33858 * 15 14 13 38 38 H 1.09000 * 109.51549 * 177.49779 * 15 14 13 39 39 H 1.08999 * 109.83936 * 292.85373 * 16 15 14 40 40 H 1.09005 * 109.74465 * 172.16398 * 16 15 14 41 41 H 0.97003 * 120.00252 * 180.02562 * 21 20 18 42 42 H 1.09006 * 110.30091 * 101.87012 * 26 5 4 43 43 H 1.08996 * 110.30301 * 224.02402 * 26 5 4 44 44 H 1.09003 * 110.76560 * 267.96557 * 27 26 5 45 45 H 1.08997 * 110.95052 * 144.60238 * 27 26 5 46 46 H 1.09001 * 110.28548 * 316.06703 * 28 4 3 47 47 H 1.08997 * 110.28790 * 78.07351 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4758 0.7275 -0.0066 5 6 3.5578 -0.6655 -0.0052 6 6 2.2527 -1.1168 0.0032 7 6 1.8012 -2.5175 0.0081 8 8 0.6167 -2.7750 -0.0917 9 7 2.7004 -3.5149 0.1232 10 6 2.2444 -4.9017 0.2452 11 6 3.4561 -5.8288 0.3600 12 1 4.0949 -5.7079 -0.5148 13 6 2.9851 -7.2842 0.4593 14 8 4.1054 -8.1226 0.7520 15 6 4.7319 -7.8455 2.0067 16 6 5.2961 -6.4158 1.9836 17 7 4.2159 -5.5029 1.5774 18 6 3.9299 -4.3801 2.3074 19 1 2.9082 -4.0432 2.4019 20 6 4.9532 -3.6753 2.9260 21 7 6.1955 -4.0997 2.8314 22 14 4.5672 -2.1243 3.8929 23 1 5.8239 -1.5631 4.4508 24 1 3.9356 -1.1250 2.9942 25 1 3.6354 -2.4514 5.0020 26 6 5.0041 -1.0943 -0.0133 27 6 5.7940 0.1565 -0.4563 28 6 4.8708 1.3123 -0.0149 29 1 -0.3633 0.0699 1.0253 30 1 -0.3634 0.8529 -0.5732 31 1 -0.3634 -0.9230 -0.4520 32 1 3.6495 -3.3144 0.1252 33 1 1.6629 -5.1718 -0.6362 34 1 1.6234 -5.0030 1.1353 35 1 2.2454 -7.3741 1.2549 36 1 2.5395 -7.5880 -0.4879 37 1 3.9986 -7.9373 2.8079 38 1 5.5440 -8.5534 2.1724 39 1 6.1173 -6.3537 1.2695 40 1 5.6520 -6.1443 2.9775 41 1 6.9106 -3.6073 3.2641 42 1 5.3129 -1.4019 0.9858 43 1 5.1535 -1.9075 -0.7235 44 1 5.9319 0.1636 -1.5375 45 1 6.7549 0.2119 0.0551 46 1 4.9308 2.1367 -0.7254 47 1 5.1431 1.6542 0.9836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051205542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:37 Heat of formation + Delta-G solvation = 36.034505 kcal Electronic energy + Delta-G solvation = -31031.259853 eV Core-core repulsion = 27024.087354 eV Total energy + Delta-G solvation = -4007.172499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44784 -39.19521 -38.24239 -36.79613 -35.33271 -33.67458 -31.90956 -31.85810 -30.69531 -30.08191 -27.37432 -27.18699 -26.27761 -25.58420 -23.47830 -22.66892 -21.69926 -20.87027 -20.01652 -19.81505 -19.09764 -17.27482 -16.48530 -16.26042 -15.98426 -15.81284 -15.46734 -14.94217 -14.76892 -14.65392 -14.31895 -14.09113 -13.73161 -13.66501 -13.64481 -13.04636 -12.76044 -12.74403 -12.60726 -12.49756 -12.12482 -11.93212 -11.63977 -11.59277 -11.07695 -10.99904 -10.97641 -10.79953 -10.65505 -10.45620 -10.24946 -10.16188 -10.13782 -9.74451 -9.64826 -9.01283 -8.86396 -8.67614 -8.38275 -8.24372 -6.71221 -5.95354 -3.50050 1.58619 2.56098 2.76859 3.26789 3.31728 3.38536 3.55277 3.74034 4.09148 4.30505 4.51258 4.93908 5.02061 5.08590 5.13799 5.18466 5.23209 5.27329 5.36408 5.38308 5.53614 5.62680 5.68856 5.77329 5.82112 5.93868 5.97660 6.00843 6.04047 6.07124 6.12603 6.16767 6.18727 6.31731 6.34634 6.46901 6.50308 6.69735 6.75389 6.95949 7.04677 7.08595 7.52154 7.65864 7.85514 8.02250 8.28943 8.31769 8.62201 9.03199 9.60345 10.21795 11.09671 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012295 B = 0.005190 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.732522 B = 5394.194140 C = 6505.227141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.265 5.265 3 N -0.267 5.267 4 C -0.006 4.006 5 C -0.165 4.165 6 C -0.016 4.016 7 C 0.586 3.414 8 O -0.567 6.567 9 N -0.675 5.675 10 C 0.137 3.863 11 C 0.124 3.876 12 H 0.042 0.958 13 C 0.057 3.943 14 O -0.393 6.393 15 C 0.033 3.967 16 C 0.143 3.857 17 N -0.591 5.591 18 C -0.256 4.256 19 H 0.067 0.933 20 C 0.023 3.977 21 N -0.896 5.896 22 Si 0.880 3.120 23 H -0.287 1.287 24 H -0.271 1.271 25 H -0.285 1.285 26 C -0.050 4.050 27 C -0.114 4.114 28 C -0.024 4.024 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.418 0.582 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.029 0.971 40 H 0.099 0.901 41 H 0.257 0.743 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.923 4.109 -6.154 7.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.052 5.052 3 N -0.099 5.099 4 C -0.164 4.164 5 C -0.176 4.176 6 C -0.142 4.142 7 C 0.371 3.629 8 O -0.448 6.448 9 N -0.326 5.326 10 C 0.013 3.987 11 C 0.017 3.983 12 H 0.060 0.940 13 C -0.022 4.022 14 O -0.311 6.311 15 C -0.045 4.045 16 C 0.018 3.982 17 N -0.317 5.317 18 C -0.386 4.386 19 H 0.084 0.916 20 C -0.178 4.178 21 N -0.539 5.539 22 Si 0.709 3.291 23 H -0.213 1.213 24 H -0.196 1.196 25 H -0.211 1.211 26 C -0.088 4.088 27 C -0.152 4.152 28 C -0.063 4.063 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.257 0.743 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.047 0.953 40 H 0.117 0.883 41 H 0.068 0.932 42 H 0.112 0.888 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.422 4.745 -6.240 9.000 hybrid contribution 0.537 0.550 1.022 1.279 sum -3.885 5.295 -5.218 8.388 Atomic orbital electron populations 1.22311 0.72523 1.05992 1.04275 1.45527 1.07412 1.01010 1.51266 1.72607 1.02999 1.13196 1.21122 1.22706 0.92582 0.94706 1.06424 1.21394 0.94315 0.95819 1.06116 1.20373 0.89986 0.89694 1.14180 1.16857 0.85641 0.83154 0.77208 1.90680 1.16503 1.84610 1.53021 1.45693 1.10815 1.05735 1.70360 1.21242 0.96505 0.79935 1.01010 1.21458 0.92445 0.92557 0.91837 0.94012 1.22838 0.88365 0.91055 0.99968 1.87798 1.46217 1.57872 1.39226 1.23474 0.96322 1.00048 0.84678 1.21602 0.89512 0.84892 1.02215 1.44055 1.38597 1.25434 1.23634 1.19040 0.92055 1.01064 1.26399 0.91556 1.25177 0.95104 0.97380 1.00091 1.69897 0.98827 1.39300 1.45913 0.86736 0.77446 0.84451 0.80515 1.21267 1.19624 1.21137 1.20504 0.87071 0.97773 1.03444 1.22367 0.98140 0.93261 1.01436 1.20387 0.85627 0.97960 1.02310 0.90276 0.89369 0.86611 0.74331 0.91915 0.91181 0.93534 0.89928 0.94172 0.90333 0.95325 0.88251 0.93245 0.88841 0.90596 0.90807 0.89809 0.90574 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 10.99 59.84 0.66 1.86 16 2 N -0.26 -4.67 3.75 -63.95 -0.24 -4.91 16 3 N -0.27 -4.81 11.91 33.78 0.40 -4.40 16 4 C -0.01 -0.11 8.13 -82.15 -0.67 -0.78 16 5 C -0.17 -3.02 6.56 -104.11 -0.68 -3.70 16 6 C -0.02 -0.30 6.95 -82.14 -0.57 -0.87 16 7 C 0.59 11.45 7.79 -12.63 -0.10 11.36 16 8 O -0.57 -11.48 14.62 5.25 0.08 -11.40 16 9 N -0.68 -12.89 3.92 -61.47 -0.24 -13.13 16 10 C 0.14 2.47 4.45 -4.04 -0.02 2.45 16 11 C 0.12 2.34 3.19 -67.42 -0.21 2.13 16 12 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 13 C 0.06 0.97 6.29 37.31 0.23 1.21 16 14 O -0.39 -7.43 10.74 -35.23 -0.38 -7.81 16 15 C 0.03 0.61 7.00 37.53 0.26 0.88 16 16 C 0.14 3.13 5.39 -3.31 -0.02 3.12 16 17 N -0.59 -13.08 3.03 -164.04 -0.50 -13.58 16 18 C -0.26 -6.15 6.99 -15.06 -0.11 -6.25 16 19 H 0.07 1.66 6.04 -52.48 -0.32 1.34 16 20 C 0.02 0.56 5.28 -17.44 -0.09 0.47 16 21 N -0.90 -22.86 10.82 55.49 0.60 -22.26 16 22 Si 0.88 20.39 28.56 -169.99 -4.85 15.53 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 C -0.05 -0.82 5.85 -27.06 -0.16 -0.97 16 27 C -0.11 -1.44 7.07 -25.27 -0.18 -1.62 16 28 C -0.02 -0.32 6.76 -26.89 -0.18 -0.50 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.12 1.62 6.02 -51.92 -0.31 1.31 16 32 H 0.42 8.29 5.66 -40.82 -0.23 8.06 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.36 7.45 -51.93 -0.39 0.97 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 2.41 6.25 -51.93 -0.32 2.09 16 41 H 0.26 6.48 8.31 -40.82 -0.34 6.15 16 42 H 0.09 1.76 7.11 -51.93 -0.37 1.39 16 43 H 0.08 1.19 7.79 -51.93 -0.40 0.79 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -29.25 367.80 -8.40 -37.64 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -6.98 Total: 10.00 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -1.83 Total: 8.77 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.02 Total: -58.28 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.30 Total: -19.21 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.85 Total: 15.53 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.25 -8.40 -37.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051205542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.678 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds