Wall clock time and date at job start Tue Mar 31 2020 18:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.28446 * 125.19959 * 2 1 4 4 C 1.31066 * 110.97137 * 180.31089 * 3 2 1 5 5 C 1.39542 * 107.59602 * 359.73324 * 4 3 2 6 6 C 1.36668 * 125.19822 * 179.83577 * 2 1 3 7 7 C 1.47169 * 126.93798 * 359.95740 * 6 2 1 8 8 O 1.21626 * 119.99959 * 5.52061 * 7 6 2 9 9 N 1.34777 * 119.99595 * 185.52671 * 7 6 2 10 10 C 1.46503 * 119.99624 * 174.69007 * 9 7 6 11 11 C 1.52997 * 109.46972 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.68100 * 301.70251 * 11 10 9 13 13 C 1.53297 * 109.68252 * 181.14190 * 11 10 9 14 14 O 1.42955 * 109.22532 * 187.97578 * 13 11 10 15 15 C 1.42956 * 114.17030 * 62.58318 * 14 13 11 16 16 C 1.53720 * 109.14475 * 297.29000 * 15 14 13 17 17 N 1.47147 * 108.16332 * 52.53580 * 16 15 14 18 18 C 1.36942 * 120.98467 * 129.43232 * 17 16 15 19 19 H 1.08004 * 120.00071 * 215.22796 * 18 17 16 20 20 C 1.38806 * 119.99761 * 35.21956 * 18 17 16 21 21 N 1.31613 * 120.00204 * 358.75614 * 20 18 17 22 22 Si 1.86798 * 119.99798 * 178.75659 * 20 18 17 23 23 H 1.48506 * 109.47001 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.47195 * 300.00121 * 22 20 18 25 25 H 1.48503 * 109.47329 * 60.00030 * 22 20 18 26 26 C 1.50855 * 109.87868 * 179.97438 * 5 4 3 27 27 C 1.54420 * 105.17505 * 342.97084 * 26 5 4 28 28 C 1.51267 * 143.02835 * 179.75709 * 4 3 2 29 29 H 1.08998 * 109.47112 * 273.90096 * 1 2 3 30 30 H 1.08994 * 109.47633 * 33.90337 * 1 2 3 31 31 H 1.09008 * 109.47286 * 153.90591 * 1 2 3 32 32 H 0.97001 * 120.00066 * 354.68144 * 9 7 6 33 33 H 1.08993 * 109.47186 * 59.99519 * 10 9 7 34 34 H 1.08999 * 109.46616 * 299.99521 * 10 9 7 35 35 H 1.09004 * 109.51328 * 307.90011 * 13 11 10 36 36 H 1.08997 * 109.50882 * 67.99710 * 13 11 10 37 37 H 1.08996 * 109.51331 * 57.33858 * 15 14 13 38 38 H 1.09000 * 109.51549 * 177.49779 * 15 14 13 39 39 H 1.08999 * 109.83936 * 292.85373 * 16 15 14 40 40 H 1.09005 * 109.74465 * 172.16398 * 16 15 14 41 41 H 0.97003 * 120.00252 * 180.02562 * 21 20 18 42 42 H 1.09006 * 110.30091 * 101.87012 * 26 5 4 43 43 H 1.08996 * 110.30301 * 224.02402 * 26 5 4 44 44 H 1.09003 * 110.76560 * 267.96557 * 27 26 5 45 45 H 1.08997 * 110.95052 * 144.60238 * 27 26 5 46 46 H 1.09001 * 110.28548 * 316.06703 * 28 4 3 47 47 H 1.08997 * 110.28790 * 78.07351 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4758 0.7275 -0.0066 5 6 3.5578 -0.6655 -0.0052 6 6 2.2527 -1.1168 0.0032 7 6 1.8012 -2.5175 0.0081 8 8 0.6167 -2.7750 -0.0917 9 7 2.7004 -3.5149 0.1232 10 6 2.2444 -4.9017 0.2452 11 6 3.4561 -5.8288 0.3600 12 1 4.0949 -5.7079 -0.5148 13 6 2.9851 -7.2842 0.4593 14 8 4.1054 -8.1226 0.7520 15 6 4.7319 -7.8455 2.0067 16 6 5.2961 -6.4158 1.9836 17 7 4.2159 -5.5029 1.5774 18 6 3.9299 -4.3801 2.3074 19 1 2.9082 -4.0432 2.4019 20 6 4.9532 -3.6753 2.9260 21 7 6.1955 -4.0997 2.8314 22 14 4.5672 -2.1243 3.8929 23 1 5.8239 -1.5631 4.4508 24 1 3.9356 -1.1250 2.9942 25 1 3.6354 -2.4514 5.0020 26 6 5.0041 -1.0943 -0.0133 27 6 5.7940 0.1565 -0.4563 28 6 4.8708 1.3123 -0.0149 29 1 -0.3633 0.0699 1.0253 30 1 -0.3634 0.8529 -0.5732 31 1 -0.3634 -0.9230 -0.4520 32 1 3.6495 -3.3144 0.1252 33 1 1.6629 -5.1718 -0.6362 34 1 1.6234 -5.0030 1.1353 35 1 2.2454 -7.3741 1.2549 36 1 2.5395 -7.5880 -0.4879 37 1 3.9986 -7.9373 2.8079 38 1 5.5440 -8.5534 2.1724 39 1 6.1173 -6.3537 1.2695 40 1 5.6520 -6.1443 2.9775 41 1 6.9106 -3.6073 3.2641 42 1 5.3129 -1.4019 0.9858 43 1 5.1535 -1.9075 -0.7235 44 1 5.9319 0.1636 -1.5375 45 1 6.7549 0.2119 0.0551 46 1 4.9308 2.1367 -0.7254 47 1 5.1431 1.6542 0.9836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051205542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:37 Heat of formation + Delta-G solvation = 17.504295 kcal Electronic energy + Delta-G solvation = -31032.063383 eV Core-core repulsion = 27024.087354 eV Total energy + Delta-G solvation = -4007.976029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.77061 -40.73363 -39.77975 -37.99884 -36.90245 -35.36302 -33.48438 -33.11375 -32.33601 -31.49176 -28.96337 -28.54939 -27.46901 -27.04313 -25.20888 -24.10734 -23.12439 -22.17610 -21.48744 -21.29858 -20.52863 -18.81323 -18.04435 -17.68903 -17.44576 -17.38501 -16.86436 -16.31531 -16.22214 -16.14914 -15.90057 -15.55617 -15.32980 -15.19773 -14.87847 -14.75289 -14.32774 -13.93312 -13.85577 -13.69956 -13.54627 -13.34267 -13.12741 -12.81262 -12.78507 -12.75172 -12.52856 -12.14680 -12.08646 -11.96758 -11.90235 -11.80310 -11.50476 -11.33146 -11.17002 -10.60223 -10.55723 -10.27475 -9.87102 -9.58716 -8.53164 -7.86460 -5.40987 0.15728 1.29795 1.35994 1.41113 1.44923 1.47541 2.08699 2.29714 2.42896 2.85430 3.06482 3.29872 3.44932 3.62371 3.84215 3.91343 4.02032 4.13497 4.19185 4.22939 4.24359 4.26588 4.34156 4.51153 4.55830 4.58958 4.64717 4.67339 4.70014 4.76508 4.77081 4.83870 4.95893 5.03620 5.06213 5.14349 5.16073 5.33735 5.35332 5.41617 5.47955 5.68957 5.72629 5.77495 6.33045 6.41886 6.49717 6.95745 7.09296 7.15176 7.76909 8.35158 9.16369 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012295 B = 0.005190 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.732522 B = 5394.194140 C = 6505.227141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.268 5.268 3 N -0.276 5.276 4 C -0.016 4.016 5 C -0.180 4.180 6 C -0.043 4.043 7 C 0.585 3.415 8 O -0.578 6.578 9 N -0.678 5.678 10 C 0.142 3.858 11 C 0.125 3.875 12 H 0.040 0.960 13 C 0.059 3.941 14 O -0.397 6.397 15 C 0.044 3.956 16 C 0.148 3.852 17 N -0.604 5.604 18 C -0.243 4.243 19 H 0.056 0.944 20 C -0.005 4.005 21 N -0.914 5.914 22 Si 0.921 3.079 23 H -0.287 1.287 24 H -0.278 1.278 25 H -0.297 1.297 26 C -0.051 4.051 27 C -0.104 4.104 28 C -0.023 4.023 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.413 0.587 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.118 0.882 37 H 0.041 0.959 38 H 0.102 0.898 39 H 0.009 0.991 40 H 0.073 0.927 41 H 0.253 0.747 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 4.295 -7.264 9.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.056 5.056 3 N -0.109 5.109 4 C -0.174 4.174 5 C -0.191 4.191 6 C -0.170 4.170 7 C 0.371 3.629 8 O -0.461 6.461 9 N -0.327 5.327 10 C 0.018 3.982 11 C 0.019 3.981 12 H 0.057 0.943 13 C -0.020 4.020 14 O -0.316 6.316 15 C -0.034 4.034 16 C 0.023 3.977 17 N -0.330 5.330 18 C -0.373 4.373 19 H 0.073 0.927 20 C -0.203 4.203 21 N -0.558 5.558 22 Si 0.751 3.249 23 H -0.213 1.213 24 H -0.204 1.204 25 H -0.225 1.225 26 C -0.090 4.090 27 C -0.141 4.141 28 C -0.062 4.062 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.251 0.749 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.136 0.864 37 H 0.060 0.940 38 H 0.120 0.880 39 H 0.027 0.973 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.676 4.919 -7.358 10.011 hybrid contribution 0.539 0.478 1.344 1.525 sum -4.137 5.398 -6.014 9.079 Atomic orbital electron populations 1.22543 0.70756 1.06955 1.05321 1.45900 1.08527 1.00483 1.50652 1.72584 1.03511 1.13377 1.21417 1.23445 0.93579 0.94788 1.05571 1.21754 0.94737 0.96681 1.05959 1.20513 0.90949 0.89869 1.15644 1.16973 0.85493 0.83545 0.76906 1.90660 1.16805 1.84906 1.53698 1.45725 1.10525 1.06181 1.70293 1.21257 0.96089 0.79375 1.01466 1.21582 0.92199 0.94149 0.90156 0.94255 1.22964 0.87829 0.89281 1.01924 1.87802 1.46719 1.58029 1.39043 1.23328 0.96968 0.98192 0.84895 1.21413 0.89244 0.86979 1.00078 1.44209 1.38829 1.25141 1.24801 1.18968 0.91321 1.01177 1.25829 0.92658 1.25440 0.95177 0.98595 1.01132 1.69985 0.99072 1.39803 1.46975 0.86122 0.76632 0.83039 0.79104 1.21302 1.20421 1.22471 1.20544 0.86816 0.99734 1.01867 1.22408 0.98078 0.90718 1.02929 1.20579 0.83253 0.98851 1.03507 0.89424 0.86516 0.87253 0.74862 0.89403 0.92605 0.93283 0.86375 0.94034 0.87952 0.97301 0.90863 0.93721 0.91735 0.90645 0.88691 0.88099 0.87807 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.17 10.99 127.77 1.40 3.57 16 2 N -0.27 -9.29 3.75 -356.24 -1.34 -10.63 16 3 N -0.28 -9.67 11.91 -47.02 -0.56 -10.23 16 4 C -0.02 -0.55 8.13 43.17 0.35 -0.20 16 5 C -0.18 -6.53 6.56 -19.54 -0.13 -6.66 16 6 C -0.04 -1.64 6.95 40.70 0.28 -1.35 16 7 C 0.58 22.90 7.79 86.59 0.67 23.58 16 8 O -0.58 -23.30 14.62 -4.11 -0.06 -23.36 16 9 N -0.68 -25.87 3.92 -466.63 -1.83 -27.70 16 10 C 0.14 4.98 4.45 86.38 0.38 5.36 16 11 C 0.13 4.59 3.19 44.96 0.14 4.73 16 12 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 13 C 0.06 1.85 6.29 72.08 0.45 2.31 16 14 O -0.40 -14.09 10.74 -148.98 -1.60 -15.69 16 15 C 0.04 1.58 7.00 72.22 0.51 2.09 16 16 C 0.15 6.50 5.39 86.50 0.47 6.97 16 17 N -0.60 -26.66 3.03 -672.90 -2.04 -28.70 16 18 C -0.24 -11.77 6.99 84.03 0.59 -11.18 16 19 H 0.06 2.81 6.04 -2.91 -0.02 2.79 16 20 C -0.01 -0.27 5.28 84.86 0.45 0.18 16 21 N -0.91 -47.44 10.82 21.65 0.23 -47.21 16 22 Si 0.92 42.88 28.56 68.60 1.96 44.84 16 23 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 26 C -0.05 -1.67 5.85 30.38 0.18 -1.49 16 27 C -0.10 -2.40 7.07 31.54 0.22 -2.18 16 28 C -0.02 -0.56 6.76 30.49 0.21 -0.36 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.11 3.01 6.02 -2.38 -0.01 2.99 16 32 H 0.41 16.61 5.66 -92.71 -0.52 16.08 16 33 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.06 2.13 7.45 -2.39 -0.02 2.12 16 35 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.07 3.61 6.25 -2.38 -0.01 3.59 16 41 H 0.25 12.99 8.31 -92.71 -0.77 12.22 16 42 H 0.06 2.47 7.11 -2.38 -0.02 2.46 16 43 H 0.08 2.38 7.79 -2.39 -0.02 2.36 16 44 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.10 1.97 8.14 -2.39 -0.02 1.96 16 47 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -63.02 367.80 1.42 -61.60 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.47 Total: 31.71 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 6.18 Total: 25.37 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -5.53 Total: -124.47 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -1.66 Total: -39.05 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.96 Total: 44.84 kcal Total: -63.02 1.42 -61.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051205542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.104 kcal (2) G-P(sol) polarization free energy of solvation -63.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds