Wall clock time and date at job start Tue Mar 31 2020 18:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.46989 * 2 1 4 4 C 1.36005 * 116.99747 * 180.02562 * 3 2 1 5 5 C 1.39684 * 125.67251 * 180.02562 * 4 3 2 6 6 C 1.37988 * 107.63967 * 179.97438 * 5 4 3 7 7 C 1.47171 * 126.43385 * 179.97438 * 6 5 4 8 8 O 1.21628 * 120.00093 * 7.07010 * 7 6 5 9 9 N 1.34777 * 119.99595 * 187.06793 * 7 6 5 10 10 C 1.47210 * 126.70317 * 5.66783 * 9 7 6 11 11 C 1.54101 * 106.21312 * 148.63375 * 10 9 7 12 12 H 1.09000 * 112.44990 * 141.26417 * 11 10 9 13 13 C 1.53786 * 109.55183 * 266.30612 * 11 10 9 14 14 N 1.47208 * 106.38007 * 131.53459 * 13 11 10 15 15 C 1.36934 * 126.70551 * 148.70581 * 14 13 11 16 16 H 1.07997 * 119.99994 * 179.97438 * 15 14 13 17 17 C 1.38810 * 120.00018 * 359.97438 * 15 14 13 18 18 N 1.31627 * 119.99669 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00466 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47390 * 89.99426 * 19 17 15 21 21 H 1.48498 * 109.47544 * 210.00243 * 19 17 15 22 22 H 1.48504 * 109.46839 * 329.99851 * 19 17 15 23 23 C 1.47224 * 106.59482 * 328.72993 * 14 13 11 24 24 C 1.53787 * 106.37405 * 31.27110 * 23 14 13 25 25 C 1.53004 * 112.60084 * 103.51276 * 24 23 14 26 26 C 1.47215 * 126.69999 * 185.97479 * 9 7 6 27 27 N 1.36668 * 107.12774 * 359.97438 * 6 5 4 28 28 H 0.96998 * 126.09492 * 180.02562 * 27 6 5 29 29 N 1.31221 * 125.67061 * 359.69020 * 4 3 2 30 30 H 1.09000 * 109.47056 * 299.99937 * 1 2 3 31 31 H 1.09000 * 109.47243 * 59.99995 * 1 2 3 32 32 H 1.08998 * 109.47382 * 180.02562 * 1 2 3 33 33 H 1.09011 * 109.46585 * 239.99994 * 2 1 3 34 34 H 1.09002 * 109.47002 * 120.00483 * 2 1 3 35 35 H 1.07997 * 126.18221 * 359.93569 * 5 4 3 36 36 H 1.09000 * 110.07522 * 267.95223 * 10 9 7 37 37 H 1.09004 * 110.07790 * 29.49092 * 10 9 7 38 38 H 1.09004 * 110.07240 * 250.76665 * 13 11 10 39 39 H 1.09007 * 110.07137 * 12.24812 * 13 11 10 40 40 H 0.97000 * 119.99287 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.07368 * 272.04581 * 23 14 13 42 42 H 1.08995 * 110.07319 * 150.49967 * 23 14 13 43 43 H 1.08997 * 109.46858 * 182.59893 * 25 24 23 44 44 H 1.09000 * 109.47304 * 302.60456 * 25 24 23 45 45 H 1.09003 * 109.46938 * 62.59977 * 25 24 23 46 46 H 1.08996 * 110.07445 * 330.50020 * 26 9 7 47 47 H 1.08998 * 110.07771 * 92.05050 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5254 -0.0005 5 6 4.0135 2.7571 -0.0001 6 6 5.3703 2.5055 -0.0003 7 6 6.4455 3.5104 -0.0006 8 8 6.1762 4.6893 0.1290 9 7 7.7287 3.1241 -0.1444 10 6 8.2113 1.7621 -0.4261 11 6 9.5018 1.9252 -1.2523 12 1 10.2662 1.1981 -0.9781 13 6 9.1644 1.8635 -2.7514 14 7 9.8387 3.0131 -3.3764 15 6 10.3354 3.0770 -4.6508 16 1 10.8124 3.9809 -4.9998 17 6 10.2259 1.9799 -5.4942 18 7 9.6450 0.8781 -5.0686 19 14 10.9028 2.0672 -7.2330 20 1 12.3175 1.6157 -7.2367 21 1 10.1004 1.1884 -8.1213 22 1 10.8286 3.4670 -7.7233 23 6 9.8753 4.0808 -2.3633 24 6 9.9682 3.3796 -0.9977 25 6 11.3773 3.4331 -0.4039 26 6 8.9219 3.9806 -0.0443 27 7 5.5279 1.1480 -0.0003 28 1 6.3723 0.6707 -0.0001 29 7 4.2529 0.5689 0.0047 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 3.5456 3.7305 -0.0003 36 1 8.4244 1.2403 0.5068 37 1 7.4658 1.2124 -1.0009 38 1 9.5362 0.9330 -3.1806 39 1 8.0864 1.9371 -2.8956 40 1 9.5689 0.1114 -5.6579 41 1 8.9650 4.6779 -2.4160 42 1 10.7485 4.7143 -2.5188 43 1 11.3959 2.8838 0.5374 44 1 12.0830 2.9825 -1.1017 45 1 11.6567 4.4713 -0.2243 46 1 8.6785 4.9983 -0.3494 47 1 9.3008 3.9763 0.9777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091774258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:36 Heat of formation + Delta-G solvation = 49.079122 kcal Electronic energy + Delta-G solvation = -29585.617645 eV Core-core repulsion = 25579.010804 eV Total energy + Delta-G solvation = -4006.606842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.58800 -40.24832 -38.62247 -38.04368 -35.20554 -33.14342 -32.18137 -31.10921 -30.56097 -30.23922 -30.08010 -26.77978 -26.08791 -25.32194 -24.14190 -23.07142 -21.84599 -21.40686 -20.38380 -20.06567 -18.98041 -17.80360 -17.10634 -16.89324 -16.50803 -16.05758 -15.82370 -15.37274 -14.85024 -14.63198 -14.37649 -14.01805 -13.82246 -13.65019 -13.58256 -13.50969 -12.97332 -12.79434 -12.72031 -12.71564 -12.21111 -11.92262 -11.87112 -11.76189 -11.52819 -11.09176 -11.05321 -11.04988 -10.95241 -10.83518 -10.28400 -10.22380 -10.14693 -10.02358 -9.83709 -9.61180 -9.23631 -8.82642 -8.79052 -8.61855 -6.96924 -5.72990 -3.17673 1.01805 2.32150 2.46491 2.65216 3.16585 3.25255 3.34878 3.40592 3.42322 4.28272 4.41143 4.56004 4.62852 4.75519 4.79075 4.82749 5.08023 5.09856 5.18507 5.24253 5.30715 5.38774 5.40823 5.46354 5.53672 5.57422 5.62796 5.76437 5.77971 5.84543 5.89174 5.97664 6.01922 6.08498 6.20540 6.28221 6.41589 6.53120 6.68565 6.79970 6.82919 7.15491 7.28334 7.37589 7.45495 7.52688 7.70882 7.98066 8.28793 9.12060 9.73015 10.39660 11.28561 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011925 B = 0.003278 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.391502 B = 8539.083217 C =10103.734230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.289 6.289 4 C 0.260 3.740 5 C -0.195 4.195 6 C 0.070 3.930 7 C 0.603 3.397 8 O -0.518 6.518 9 N -0.604 5.604 10 C 0.092 3.908 11 C -0.113 4.113 12 H 0.093 0.907 13 C 0.142 3.858 14 N -0.593 5.593 15 C -0.218 4.218 16 H 0.079 0.921 17 C -0.012 4.012 18 N -0.923 5.923 19 Si 0.917 3.083 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.143 3.857 24 C -0.086 4.086 25 C -0.122 4.122 26 C 0.120 3.880 27 N -0.447 5.447 28 H 0.446 0.554 29 N -0.319 5.319 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.166 0.834 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.125 0.875 39 H 0.006 0.994 40 H 0.253 0.747 41 H 0.021 0.979 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.042 -2.020 14.132 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.193 6.193 4 C 0.057 3.943 5 C -0.227 4.227 6 C -0.061 4.061 7 C 0.389 3.611 8 O -0.393 6.393 9 N -0.337 5.337 10 C -0.031 4.031 11 C -0.133 4.133 12 H 0.111 0.889 13 C 0.016 3.984 14 N -0.317 5.317 15 C -0.346 4.346 16 H 0.097 0.903 17 C -0.207 4.207 18 N -0.571 5.571 19 Si 0.748 3.252 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.016 3.984 24 C -0.089 4.089 25 C -0.180 4.180 26 C -0.002 4.002 27 N -0.169 5.169 28 H 0.298 0.702 29 N -0.162 5.162 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.184 0.816 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.143 0.857 39 H 0.024 0.976 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.103 0.897 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.391 -2.477 13.973 16.486 hybrid contribution 0.565 0.258 -0.940 1.127 sum -7.826 -2.219 13.034 15.364 Atomic orbital electron populations 1.21792 0.92692 1.02911 1.03500 1.22733 0.95419 0.81225 1.02351 1.86305 1.13799 1.29691 1.89547 1.20184 0.84376 0.91900 0.97805 1.21012 0.89542 0.98257 1.13865 1.21169 0.95121 0.84464 1.05326 1.16572 0.80068 0.86865 0.77576 1.90846 1.81951 1.16329 1.50126 1.48333 1.04955 1.11203 1.69237 1.22555 0.97911 0.83511 0.99165 1.23170 0.94273 0.96052 0.99839 0.88894 1.22005 0.94471 0.96363 0.85536 1.44473 1.67207 1.09897 1.10084 1.19099 1.30228 0.98721 0.86579 0.90283 1.24771 1.01016 0.96135 0.98781 1.69567 1.48822 1.03748 1.35010 0.86027 0.78250 0.77308 0.83662 1.21544 1.21614 1.20711 1.21451 0.98362 0.91723 0.86844 1.22190 0.94353 0.95958 0.96362 1.21618 0.94883 1.01423 1.00029 1.22186 0.83470 0.95469 0.99079 1.46847 1.07069 1.03640 1.59376 0.70159 1.77295 0.88366 1.20428 1.30100 0.91553 0.91434 0.90264 0.91604 0.91775 0.81615 0.91222 0.90500 0.85731 0.97640 0.93610 0.96171 0.93652 0.92989 0.91484 0.92705 0.89699 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.58 6.33 37.16 0.24 0.81 16 3 O -0.29 -3.77 10.22 -19.76 -0.20 -3.97 16 4 C 0.26 3.78 7.85 -17.27 -0.14 3.65 16 5 C -0.20 -2.90 10.64 -39.13 -0.42 -3.32 16 6 C 0.07 1.06 6.89 -82.18 -0.57 0.49 16 7 C 0.60 9.88 7.85 -12.63 -0.10 9.78 16 8 O -0.52 -9.78 17.11 5.25 0.09 -9.69 16 9 N -0.60 -9.06 3.32 -172.74 -0.57 -9.63 16 10 C 0.09 1.24 4.89 -3.08 -0.02 1.22 16 11 C -0.11 -1.84 3.68 -88.66 -0.33 -2.17 16 12 H 0.09 1.41 7.88 -51.93 -0.41 1.00 16 13 C 0.14 3.17 5.71 -3.25 -0.02 3.15 16 14 N -0.59 -14.45 3.39 -171.12 -0.58 -15.03 16 15 C -0.22 -5.86 10.34 -15.06 -0.16 -6.02 16 16 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 17 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 18 N -0.92 -25.78 10.08 55.49 0.56 -25.22 16 19 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 C 0.14 2.85 6.38 -3.24 -0.02 2.83 16 24 C -0.09 -1.35 1.09 -152.72 -0.17 -1.51 16 25 C -0.12 -1.59 8.49 37.16 0.32 -1.27 16 26 C 0.12 1.72 5.98 -3.24 -0.02 1.70 16 27 N -0.45 -6.10 6.69 33.41 0.22 -5.87 16 28 H 0.45 5.16 5.55 -182.65 -1.01 4.14 16 29 N -0.32 -4.63 12.05 30.46 0.37 -4.26 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.17 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 37 H 0.08 1.06 5.07 -51.93 -0.26 0.80 16 38 H 0.13 3.16 5.44 -51.93 -0.28 2.88 16 39 H 0.01 0.14 7.42 -51.93 -0.39 -0.25 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.02 0.44 7.39 -51.93 -0.38 0.05 16 42 H 0.05 0.87 7.85 -51.93 -0.41 0.47 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 1.31 7.23 -51.93 -0.38 0.93 16 47 H 0.07 0.82 7.87 -51.93 -0.41 0.42 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -31.69 374.79 -8.30 -39.99 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.70 Total: 3.27 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -1.10 Total: 8.22 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 0.00 Total: -60.02 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.11 Total: -13.66 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.69 -8.30 -39.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091774258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.065 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds