Wall clock time and date at job start Tue Mar 31 2020 18:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.46989 * 2 1 4 4 C 1.36005 * 116.99747 * 180.02562 * 3 2 1 5 5 C 1.39684 * 125.67251 * 180.02562 * 4 3 2 6 6 C 1.37988 * 107.63967 * 179.97438 * 5 4 3 7 7 C 1.47171 * 126.43385 * 179.97438 * 6 5 4 8 8 O 1.21628 * 120.00093 * 7.07010 * 7 6 5 9 9 N 1.34777 * 119.99595 * 187.06793 * 7 6 5 10 10 C 1.47210 * 126.70317 * 5.66783 * 9 7 6 11 11 C 1.54101 * 106.21312 * 148.63375 * 10 9 7 12 12 H 1.09000 * 112.44990 * 141.26417 * 11 10 9 13 13 C 1.53786 * 109.55183 * 266.30612 * 11 10 9 14 14 N 1.47208 * 106.38007 * 131.53459 * 13 11 10 15 15 C 1.36934 * 126.70551 * 148.70581 * 14 13 11 16 16 H 1.07997 * 119.99994 * 179.97438 * 15 14 13 17 17 C 1.38810 * 120.00018 * 359.97438 * 15 14 13 18 18 N 1.31627 * 119.99669 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00466 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47390 * 89.99426 * 19 17 15 21 21 H 1.48498 * 109.47544 * 210.00243 * 19 17 15 22 22 H 1.48504 * 109.46839 * 329.99851 * 19 17 15 23 23 C 1.47224 * 106.59482 * 328.72993 * 14 13 11 24 24 C 1.53787 * 106.37405 * 31.27110 * 23 14 13 25 25 C 1.53004 * 112.60084 * 103.51276 * 24 23 14 26 26 C 1.47215 * 126.69999 * 185.97479 * 9 7 6 27 27 N 1.36668 * 107.12774 * 359.97438 * 6 5 4 28 28 H 0.96998 * 126.09492 * 180.02562 * 27 6 5 29 29 N 1.31221 * 125.67061 * 359.69020 * 4 3 2 30 30 H 1.09000 * 109.47056 * 299.99937 * 1 2 3 31 31 H 1.09000 * 109.47243 * 59.99995 * 1 2 3 32 32 H 1.08998 * 109.47382 * 180.02562 * 1 2 3 33 33 H 1.09011 * 109.46585 * 239.99994 * 2 1 3 34 34 H 1.09002 * 109.47002 * 120.00483 * 2 1 3 35 35 H 1.07997 * 126.18221 * 359.93569 * 5 4 3 36 36 H 1.09000 * 110.07522 * 267.95223 * 10 9 7 37 37 H 1.09004 * 110.07790 * 29.49092 * 10 9 7 38 38 H 1.09004 * 110.07240 * 250.76665 * 13 11 10 39 39 H 1.09007 * 110.07137 * 12.24812 * 13 11 10 40 40 H 0.97000 * 119.99287 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.07368 * 272.04581 * 23 14 13 42 42 H 1.08995 * 110.07319 * 150.49967 * 23 14 13 43 43 H 1.08997 * 109.46858 * 182.59893 * 25 24 23 44 44 H 1.09000 * 109.47304 * 302.60456 * 25 24 23 45 45 H 1.09003 * 109.46938 * 62.59977 * 25 24 23 46 46 H 1.08996 * 110.07445 * 330.50020 * 26 9 7 47 47 H 1.08998 * 110.07771 * 92.05050 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5254 -0.0005 5 6 4.0135 2.7571 -0.0001 6 6 5.3703 2.5055 -0.0003 7 6 6.4455 3.5104 -0.0006 8 8 6.1762 4.6893 0.1290 9 7 7.7287 3.1241 -0.1444 10 6 8.2113 1.7621 -0.4261 11 6 9.5018 1.9252 -1.2523 12 1 10.2662 1.1981 -0.9781 13 6 9.1644 1.8635 -2.7514 14 7 9.8387 3.0131 -3.3764 15 6 10.3354 3.0770 -4.6508 16 1 10.8124 3.9809 -4.9998 17 6 10.2259 1.9799 -5.4942 18 7 9.6450 0.8781 -5.0686 19 14 10.9028 2.0672 -7.2330 20 1 12.3175 1.6157 -7.2367 21 1 10.1004 1.1884 -8.1213 22 1 10.8286 3.4670 -7.7233 23 6 9.8753 4.0808 -2.3633 24 6 9.9682 3.3796 -0.9977 25 6 11.3773 3.4331 -0.4039 26 6 8.9219 3.9806 -0.0443 27 7 5.5279 1.1480 -0.0003 28 1 6.3723 0.6707 -0.0001 29 7 4.2529 0.5689 0.0047 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 3.5456 3.7305 -0.0003 36 1 8.4244 1.2403 0.5068 37 1 7.4658 1.2124 -1.0009 38 1 9.5362 0.9330 -3.1806 39 1 8.0864 1.9371 -2.8956 40 1 9.5689 0.1114 -5.6579 41 1 8.9650 4.6779 -2.4160 42 1 10.7485 4.7143 -2.5188 43 1 11.3959 2.8838 0.5374 44 1 12.0830 2.9825 -1.1017 45 1 11.6567 4.4713 -0.2243 46 1 8.6785 4.9983 -0.3494 47 1 9.3008 3.9763 0.9777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091774258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:35 Heat of formation + Delta-G solvation = 26.446071 kcal Electronic energy + Delta-G solvation = -29586.599088 eV Core-core repulsion = 25579.010804 eV Total energy + Delta-G solvation = -4007.588284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.73590 -41.51401 -39.83429 -39.19323 -36.78232 -34.69088 -33.14408 -32.59409 -31.86167 -31.57035 -31.20211 -27.98535 -27.76533 -26.81679 -25.25278 -24.28678 -23.09786 -22.49191 -21.93197 -21.26431 -20.31470 -19.05006 -18.74146 -18.14178 -17.51941 -17.29608 -17.05744 -16.83504 -16.40984 -15.85691 -15.59532 -15.43778 -15.19347 -15.02911 -14.82818 -14.75589 -14.23143 -13.89029 -13.60602 -13.49074 -13.43600 -13.43122 -13.30757 -13.00956 -12.81222 -12.70663 -12.66886 -12.32778 -12.06468 -12.03027 -11.86306 -11.83521 -11.58549 -11.51941 -11.34527 -11.20620 -10.80581 -10.39064 -9.94278 -9.77114 -8.94080 -7.77547 -5.24955 -0.16579 1.26496 1.31685 1.45724 1.46836 1.50086 1.55224 1.96608 2.22110 2.47149 3.13481 3.28601 3.36775 3.45995 3.53259 3.82100 3.90218 4.04666 4.10108 4.11069 4.14864 4.20775 4.26520 4.36831 4.39547 4.52021 4.66587 4.69620 4.73693 4.76520 4.79599 4.89854 4.94025 4.96101 4.98879 5.18745 5.19623 5.22467 5.29218 5.44399 5.51133 5.57004 5.74687 5.79538 6.12719 6.17996 6.34638 6.35507 6.73542 7.08953 7.75299 8.41899 9.20762 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011925 B = 0.003278 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.391502 B = 8539.083217 C =10103.734230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.297 6.297 4 C 0.256 3.744 5 C -0.206 4.206 6 C 0.064 3.936 7 C 0.602 3.398 8 O -0.551 6.551 9 N -0.604 5.604 10 C 0.095 3.905 11 C -0.103 4.103 12 H 0.114 0.886 13 C 0.147 3.853 14 N -0.617 5.617 15 C -0.234 4.234 16 H 0.078 0.922 17 C -0.064 4.064 18 N -0.944 5.944 19 Si 0.978 3.022 20 H -0.281 1.281 21 H -0.295 1.295 22 H -0.276 1.276 23 C 0.138 3.862 24 C -0.074 4.074 25 C -0.115 4.115 26 C 0.122 3.878 27 N -0.436 5.436 28 H 0.455 0.545 29 N -0.324 5.324 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.171 0.829 36 H 0.122 0.878 37 H 0.070 0.930 38 H 0.094 0.906 39 H -0.028 1.028 40 H 0.247 0.753 41 H 0.000 1.000 42 H 0.048 0.952 43 H 0.085 0.915 44 H 0.047 0.953 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 -2.614 16.077 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 O -0.202 6.202 4 C 0.053 3.947 5 C -0.238 4.238 6 C -0.068 4.068 7 C 0.389 3.611 8 O -0.428 6.428 9 N -0.336 5.336 10 C -0.028 4.028 11 C -0.123 4.123 12 H 0.132 0.868 13 C 0.021 3.979 14 N -0.340 5.340 15 C -0.363 4.363 16 H 0.096 0.904 17 C -0.257 4.257 18 N -0.594 5.594 19 Si 0.807 3.193 20 H -0.208 1.208 21 H -0.222 1.222 22 H -0.201 1.201 23 C 0.012 3.988 24 C -0.076 4.076 25 C -0.172 4.172 26 C 0.000 4.000 27 N -0.161 5.161 28 H 0.309 0.691 29 N -0.167 5.167 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.188 0.812 36 H 0.139 0.861 37 H 0.088 0.912 38 H 0.112 0.888 39 H -0.010 1.010 40 H 0.057 0.943 41 H 0.018 0.982 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.802 -3.081 15.941 18.013 hybrid contribution 0.347 0.459 -1.605 1.705 sum -7.455 -2.622 14.336 16.370 Atomic orbital electron populations 1.21819 0.90476 1.04450 1.03562 1.23014 0.97156 0.79873 1.02390 1.86315 1.12946 1.31613 1.89331 1.20287 0.85056 0.91708 0.97638 1.21204 0.89811 0.98832 1.13938 1.21032 0.94921 0.84821 1.05987 1.16684 0.80577 0.86599 0.77251 1.90824 1.82455 1.17579 1.51894 1.48403 1.04796 1.12032 1.68387 1.22661 0.96098 0.83047 1.00950 1.23024 0.96316 0.97263 0.95723 0.86773 1.21797 0.92064 0.94471 0.89574 1.44776 1.67149 1.11778 1.10333 1.19413 1.29974 0.98718 0.88185 0.90385 1.25541 1.01823 0.96057 1.02235 1.69833 1.49849 1.04018 1.35708 0.85080 0.77620 0.77214 0.79426 1.20789 1.22197 1.20105 1.21618 0.97419 0.91194 0.88586 1.22102 0.96803 0.94592 0.94148 1.21591 0.91964 1.02948 1.00744 1.22269 0.82674 0.94430 1.00632 1.46830 1.07312 1.03124 1.58785 0.69116 1.77269 0.88622 1.20539 1.30265 0.91167 0.91672 0.87950 0.92036 0.91239 0.81178 0.86069 0.91186 0.88802 1.01010 0.94261 0.98190 0.93338 0.89612 0.93362 0.91148 0.91171 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 71.98 0.74 -1.14 16 2 C 0.05 0.96 6.33 71.98 0.46 1.42 16 3 O -0.30 -7.62 10.22 -93.61 -0.96 -8.58 16 4 C 0.26 7.33 7.85 85.13 0.67 8.00 16 5 C -0.21 -6.11 10.64 22.56 0.24 -5.87 16 6 C 0.06 1.88 6.89 40.68 0.28 2.16 16 7 C 0.60 19.31 7.85 86.59 0.68 19.99 16 8 O -0.55 -20.78 17.11 -4.12 -0.07 -20.85 16 9 N -0.60 -17.02 3.32 -818.68 -2.72 -19.73 16 10 C 0.10 2.32 4.89 86.62 0.42 2.74 16 11 C -0.10 -3.18 3.68 -9.53 -0.04 -3.21 16 12 H 0.11 3.11 7.88 -2.39 -0.02 3.09 16 13 C 0.15 6.69 5.71 86.51 0.49 7.18 16 14 N -0.62 -30.76 3.39 -695.30 -2.36 -33.11 16 15 C -0.23 -12.88 10.34 84.03 0.87 -12.01 16 16 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 17 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 18 N -0.94 -54.31 10.08 21.65 0.22 -54.09 16 19 Si 0.98 45.06 29.55 68.60 2.03 47.09 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 C 0.14 5.52 6.38 86.51 0.55 6.07 16 24 C -0.07 -2.17 1.09 -51.02 -0.06 -2.22 16 25 C -0.12 -2.58 8.49 71.98 0.61 -1.97 16 26 C 0.12 3.18 5.98 86.51 0.52 3.69 16 27 N -0.44 -11.43 6.69 -48.20 -0.32 -11.75 16 28 H 0.45 9.68 5.55 -213.36 -1.18 8.50 16 29 N -0.32 -9.12 12.05 -170.76 -2.06 -11.18 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.17 4.73 8.06 -2.91 -0.02 4.71 16 36 H 0.12 1.85 8.12 -2.39 -0.02 1.83 16 37 H 0.07 1.85 5.07 -2.38 -0.01 1.84 16 38 H 0.09 4.92 5.44 -2.39 -0.01 4.90 16 39 H -0.03 -1.43 7.42 -2.38 -0.02 -1.44 16 40 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 41 H 0.00 0.01 7.39 -2.39 -0.02 0.00 16 42 H 0.05 1.87 7.85 -2.39 -0.02 1.85 16 43 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.07 2.08 7.23 -2.39 -0.02 2.06 16 47 H 0.11 2.07 7.87 -2.39 -0.02 2.05 16 Total: -1.00 -71.86 374.79 0.48 -71.37 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -0.19 Total: 19.08 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: 6.91 Total: 21.75 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -7.23 Total: -129.87 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -1.03 Total: -29.43 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -71.86 0.48 -71.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091774258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.819 kcal (2) G-P(sol) polarization free energy of solvation -71.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds