Wall clock time and date at job start Tue Mar 31 2020 19:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40087 * 126.03964 * 2 1 4 4 C 1.30834 * 108.20871 * 180.22756 * 3 2 1 5 5 C 1.50701 * 125.90246 * 179.80983 * 4 3 2 6 6 C 1.52994 * 117.50121 * 163.70310 * 5 4 3 7 7 C 1.53003 * 117.49763 * 95.04228 * 5 4 3 8 8 C 1.39870 * 108.19969 * 359.77619 * 4 3 2 9 9 C 1.34944 * 126.03923 * 179.83470 * 2 1 3 10 10 C 1.50706 * 126.12597 * 0.03989 * 9 2 1 11 11 N 1.46496 * 109.47106 * 274.71381 * 10 9 2 12 12 C 1.34776 * 120.00006 * 179.97438 * 11 10 9 13 13 O 1.21355 * 119.99900 * 0.02562 * 12 11 10 14 14 C 1.49442 * 120.00405 * 179.97438 * 12 11 10 15 15 O 1.21349 * 120.00050 * 0.02562 * 14 12 11 16 16 N 1.34777 * 120.00609 * 180.02562 * 14 12 11 17 17 C 1.46499 * 120.00580 * 180.02562 * 16 14 12 18 18 C 1.52996 * 109.47369 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47131 * 180.02562 * 18 17 16 20 20 C 1.50706 * 109.47051 * 179.97438 * 19 18 17 21 21 H 1.07995 * 119.99838 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99712 * 179.97438 * 20 19 18 23 23 N 1.31509 * 119.99855 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99499 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47256 * 60.00357 * 24 22 20 26 26 H 1.48503 * 109.46819 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47158 * 299.99988 * 24 22 20 28 28 H 1.08994 * 109.47551 * 270.16478 * 1 2 3 29 29 H 1.09005 * 109.47153 * 30.16267 * 1 2 3 30 30 H 1.09004 * 109.47124 * 150.15655 * 1 2 3 31 31 H 1.09003 * 115.54965 * 309.37823 * 5 4 3 32 32 H 1.09003 * 117.49704 * 0.02562 * 6 5 4 33 33 H 1.08994 * 117.49902 * 145.02057 * 6 5 4 34 34 H 1.08993 * 117.49814 * 214.98223 * 7 5 4 35 35 H 1.09001 * 117.49702 * 359.97438 * 7 5 4 36 36 H 1.08006 * 126.03715 * 179.97438 * 8 4 3 37 37 H 1.09001 * 109.46953 * 34.71120 * 10 9 2 38 38 H 1.09000 * 109.47318 * 154.70717 * 10 9 2 39 39 H 0.96998 * 120.00192 * 0.02562 * 11 10 9 40 40 H 0.96998 * 119.99598 * 0.02562 * 16 14 12 41 41 H 1.09001 * 109.46813 * 300.00007 * 17 16 14 42 42 H 1.09004 * 109.47041 * 59.99880 * 17 16 14 43 43 H 1.09001 * 109.46997 * 299.99697 * 18 17 16 44 44 H 1.09004 * 109.47298 * 59.99840 * 18 17 16 45 45 H 1.09001 * 109.46832 * 299.99675 * 19 18 17 46 46 H 1.09004 * 109.47261 * 59.99694 * 19 18 17 47 47 H 0.97004 * 119.99203 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0049 5 6 4.7497 1.6236 -0.0108 6 6 6.0914 0.9916 0.3649 7 6 5.3955 1.9464 1.3381 8 6 3.5436 -0.6665 -0.0030 9 6 2.2589 -1.0912 0.0031 10 6 1.7973 -2.5258 0.0064 11 7 1.5389 -2.9525 1.3839 12 6 1.1132 -4.2069 1.6321 13 8 0.9444 -4.9831 0.7147 14 6 0.8501 -4.6424 3.0373 15 8 1.0194 -3.8665 3.9548 16 7 0.4249 -5.8970 3.2856 17 6 0.1665 -6.3238 4.6630 18 6 -0.3015 -7.7804 4.6664 19 6 -0.5720 -8.2259 6.1049 20 6 -1.0335 -9.6605 6.1081 21 1 -1.1244 -10.2006 5.1774 22 6 -1.3387 -10.2838 7.2996 23 7 -1.2276 -9.6262 8.4330 24 14 -1.9102 -12.0622 7.3036 25 1 -0.8559 -12.9222 6.7087 26 1 -2.1728 -12.4945 8.6998 27 1 -3.1567 -12.1834 6.5056 28 1 -0.3634 0.0030 1.0276 29 1 -0.3634 0.8886 -0.5164 30 1 -0.3633 -0.8914 -0.5114 31 1 4.7564 2.4041 -0.7717 32 1 6.0954 -0.0691 0.6159 33 1 6.9809 1.3566 -0.1486 34 1 5.8275 2.9391 1.4646 35 1 4.9413 1.5143 2.2298 36 1 4.4211 -1.2963 -0.0064 37 1 0.8822 -2.6144 -0.5791 38 1 2.5708 -3.1574 -0.4306 39 1 1.6735 -2.3320 2.1172 40 1 0.2899 -6.5174 2.5523 41 1 1.0816 -6.2352 5.2486 42 1 -0.6071 -5.6922 5.1000 43 1 -1.2165 -7.8694 4.0808 44 1 0.4724 -8.4117 4.2296 45 1 0.3428 -8.1368 6.6909 46 1 -1.3460 -7.5945 6.5414 47 1 -1.4427 -10.0646 9.2711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119685909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:43 Heat of formation + Delta-G solvation = 20.855813 kcal Electronic energy + Delta-G solvation = -26950.186187 eV Core-core repulsion = 22942.355490 eV Total energy + Delta-G solvation = -4007.830696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.89395 -40.65397 -38.63742 -37.59790 -35.98475 -35.23387 -33.40575 -33.30418 -31.33894 -31.28681 -27.74563 -27.33006 -26.75637 -24.30403 -23.62898 -22.81022 -22.48673 -20.84367 -20.74153 -20.22479 -19.71236 -18.52997 -17.17391 -16.96392 -16.40214 -16.24736 -16.16981 -15.95082 -15.34723 -15.15493 -14.98547 -14.77301 -14.47649 -14.45303 -13.92229 -13.78827 -13.43562 -13.18041 -12.95052 -12.88637 -12.32747 -12.26780 -11.93426 -11.90008 -11.83940 -11.81612 -11.34267 -11.05785 -10.91191 -10.79503 -10.65894 -10.65193 -9.94819 -9.93154 -9.70721 -9.57158 -9.39145 -9.17135 -9.04462 -8.97051 -8.39698 -6.04557 -4.07785 1.17242 1.29966 1.96437 2.11032 2.46724 3.11651 3.31065 3.35803 3.37842 3.40298 3.60158 3.81075 3.95654 4.36476 4.39224 4.43488 4.46387 4.51478 4.59625 4.70681 4.86877 4.94975 5.07296 5.12479 5.21924 5.25635 5.31385 5.45350 5.54634 5.61988 5.64798 5.71329 5.72064 5.73919 6.03808 6.16382 6.20454 6.46954 6.50153 6.62252 6.77675 6.91748 7.26760 7.28305 7.58419 7.59054 7.70509 7.93184 7.96744 8.34500 8.98418 9.56632 11.06612 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023883 B = 0.001586 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.089490 B =17651.377666 C =18092.984728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.362 5.362 3 N -0.278 5.278 4 C 0.102 3.898 5 C -0.083 4.083 6 C -0.164 4.164 7 C -0.164 4.164 8 C -0.238 4.238 9 C 0.059 3.941 10 C 0.185 3.815 11 N -0.703 5.703 12 C 0.512 3.488 13 O -0.516 6.516 14 C 0.501 3.499 15 O -0.525 6.525 16 N -0.690 5.690 17 C 0.113 3.887 18 C -0.123 4.123 19 C 0.024 3.976 20 C -0.524 4.524 21 H 0.056 0.944 22 C 0.058 3.942 23 N -0.894 5.894 24 Si 0.894 3.106 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.151 0.849 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.416 0.584 40 H 0.411 0.589 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.207 22.955 -20.332 32.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.144 5.144 3 N -0.101 5.101 4 C -0.063 4.063 5 C -0.103 4.103 6 C -0.202 4.202 7 C -0.202 4.202 8 C -0.268 4.268 9 C -0.068 4.068 10 C 0.061 3.939 11 N -0.358 5.358 12 C 0.293 3.707 13 O -0.391 6.391 14 C 0.280 3.720 15 O -0.401 6.401 16 N -0.342 5.342 17 C -0.009 4.009 18 C -0.161 4.161 19 C -0.013 4.013 20 C -0.563 4.563 21 H 0.074 0.926 22 C -0.144 4.144 23 N -0.532 5.532 24 Si 0.722 3.278 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.138 0.862 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.169 0.831 37 H 0.104 0.896 38 H 0.120 0.880 39 H 0.252 0.748 40 H 0.247 0.753 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.184 23.901 -20.136 32.574 hybrid contribution 0.052 -1.643 0.063 1.645 sum 9.236 22.258 -20.073 31.363 Atomic orbital electron populations 1.21959 0.73854 1.04747 1.03986 1.48484 1.06637 1.03041 1.56273 1.77358 1.01185 1.07211 1.24325 1.21348 0.92203 0.92969 0.99769 1.20144 0.88911 1.00546 1.00654 1.23035 0.94496 0.99682 1.02985 1.23015 1.02991 1.00959 0.93242 1.21175 0.96186 0.94438 1.15034 1.20862 0.91415 0.89835 1.04680 1.19825 1.02558 0.87853 0.83698 1.45768 1.67139 1.13504 1.09396 1.20386 0.77911 0.82329 0.90100 1.90781 1.50036 1.52396 1.45916 1.19908 0.79719 0.83721 0.88648 1.90777 1.51104 1.52726 1.45526 1.46073 1.64276 1.12086 1.11719 1.21866 1.01478 0.97768 0.79744 1.21932 1.00275 0.91261 1.02609 1.19032 0.97309 0.96244 0.88737 1.21162 1.45199 0.97140 0.92775 0.92609 1.25023 0.95595 0.98141 0.95642 1.69952 1.48709 1.36899 0.97684 0.86627 0.79240 0.84964 0.76982 1.20219 1.21266 1.20233 0.90225 0.88893 0.89254 0.86240 0.88132 0.88000 0.88117 0.88480 0.83117 0.89597 0.88001 0.74760 0.75266 0.91018 0.91047 0.92414 0.92382 0.96182 0.96199 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.54 11.27 59.84 0.67 1.21 16 2 N -0.36 -3.16 4.01 -63.89 -0.26 -3.42 16 3 N -0.28 -2.97 12.58 33.67 0.42 -2.54 16 4 C 0.10 0.95 6.85 -82.41 -0.56 0.39 16 5 C -0.08 -0.58 6.33 -91.77 -0.58 -1.16 16 6 C -0.16 -0.88 10.02 -26.70 -0.27 -1.15 16 7 C -0.16 -1.01 10.24 -26.69 -0.27 -1.28 16 8 C -0.24 -2.00 10.02 -40.01 -0.40 -2.41 16 9 C 0.06 0.49 6.30 -82.26 -0.52 -0.03 16 10 C 0.19 1.37 5.85 -5.19 -0.03 1.34 16 11 N -0.70 -6.46 5.54 -61.91 -0.34 -6.80 16 12 C 0.51 6.07 7.89 -11.59 -0.09 5.98 16 13 O -0.52 -6.94 16.48 5.49 0.09 -6.85 16 14 C 0.50 7.05 7.89 -11.59 -0.09 6.96 16 15 O -0.52 -8.58 16.48 5.50 0.09 -8.49 16 16 N -0.69 -9.82 5.55 -60.73 -0.34 -10.16 16 17 C 0.11 1.88 5.67 -4.04 -0.02 1.86 16 18 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 19 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 20 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 21 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 24 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.35 7.14 -51.93 -0.37 -0.02 16 31 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 0.53 7.15 -51.93 -0.37 0.16 16 33 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.15 1.01 7.39 -52.48 -0.39 0.63 16 37 H 0.09 0.57 7.23 -51.93 -0.38 0.19 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.42 3.84 7.94 -40.82 -0.32 3.52 16 40 H 0.41 5.28 7.94 -40.82 -0.32 4.96 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 404.62 15.07 6.10 6.10 Total: -1.00 -33.56 404.62 -8.57 -42.12 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.19 Total: 2.99 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -2.86 Total: -3.54 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.22 Total: -48.62 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.18 Total: -15.34 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.56 -8.57 -42.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119685909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.980 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds