Wall clock time and date at job start Tue Mar 31 2020 19:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40087 * 126.03964 * 2 1 4 4 C 1.30834 * 108.20871 * 180.22756 * 3 2 1 5 5 C 1.50701 * 125.90246 * 179.80983 * 4 3 2 6 6 C 1.52994 * 117.50121 * 163.70310 * 5 4 3 7 7 C 1.53003 * 117.49763 * 95.04228 * 5 4 3 8 8 C 1.39870 * 108.19969 * 359.77619 * 4 3 2 9 9 C 1.34944 * 126.03923 * 179.83470 * 2 1 3 10 10 C 1.50706 * 126.12597 * 0.03989 * 9 2 1 11 11 N 1.46496 * 109.47106 * 274.71381 * 10 9 2 12 12 C 1.34776 * 120.00006 * 179.97438 * 11 10 9 13 13 O 1.21355 * 119.99900 * 0.02562 * 12 11 10 14 14 C 1.49442 * 120.00405 * 179.97438 * 12 11 10 15 15 O 1.21349 * 120.00050 * 0.02562 * 14 12 11 16 16 N 1.34777 * 120.00609 * 180.02562 * 14 12 11 17 17 C 1.46499 * 120.00580 * 180.02562 * 16 14 12 18 18 C 1.52996 * 109.47369 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47131 * 180.02562 * 18 17 16 20 20 C 1.50706 * 109.47051 * 179.97438 * 19 18 17 21 21 H 1.07995 * 119.99838 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99712 * 179.97438 * 20 19 18 23 23 N 1.31509 * 119.99855 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99499 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47256 * 60.00357 * 24 22 20 26 26 H 1.48503 * 109.46819 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47158 * 299.99988 * 24 22 20 28 28 H 1.08994 * 109.47551 * 270.16478 * 1 2 3 29 29 H 1.09005 * 109.47153 * 30.16267 * 1 2 3 30 30 H 1.09004 * 109.47124 * 150.15655 * 1 2 3 31 31 H 1.09003 * 115.54965 * 309.37823 * 5 4 3 32 32 H 1.09003 * 117.49704 * 0.02562 * 6 5 4 33 33 H 1.08994 * 117.49902 * 145.02057 * 6 5 4 34 34 H 1.08993 * 117.49814 * 214.98223 * 7 5 4 35 35 H 1.09001 * 117.49702 * 359.97438 * 7 5 4 36 36 H 1.08006 * 126.03715 * 179.97438 * 8 4 3 37 37 H 1.09001 * 109.46953 * 34.71120 * 10 9 2 38 38 H 1.09000 * 109.47318 * 154.70717 * 10 9 2 39 39 H 0.96998 * 120.00192 * 0.02562 * 11 10 9 40 40 H 0.96998 * 119.99598 * 0.02562 * 16 14 12 41 41 H 1.09001 * 109.46813 * 300.00007 * 17 16 14 42 42 H 1.09004 * 109.47041 * 59.99880 * 17 16 14 43 43 H 1.09001 * 109.46997 * 299.99697 * 18 17 16 44 44 H 1.09004 * 109.47298 * 59.99840 * 18 17 16 45 45 H 1.09001 * 109.46832 * 299.99675 * 19 18 17 46 46 H 1.09004 * 109.47261 * 59.99694 * 19 18 17 47 47 H 0.97004 * 119.99203 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0049 5 6 4.7497 1.6236 -0.0108 6 6 6.0914 0.9916 0.3649 7 6 5.3955 1.9464 1.3381 8 6 3.5436 -0.6665 -0.0030 9 6 2.2589 -1.0912 0.0031 10 6 1.7973 -2.5258 0.0064 11 7 1.5389 -2.9525 1.3839 12 6 1.1132 -4.2069 1.6321 13 8 0.9444 -4.9831 0.7147 14 6 0.8501 -4.6424 3.0373 15 8 1.0194 -3.8665 3.9548 16 7 0.4249 -5.8970 3.2856 17 6 0.1665 -6.3238 4.6630 18 6 -0.3015 -7.7804 4.6664 19 6 -0.5720 -8.2259 6.1049 20 6 -1.0335 -9.6605 6.1081 21 1 -1.1244 -10.2006 5.1774 22 6 -1.3387 -10.2838 7.2996 23 7 -1.2276 -9.6262 8.4330 24 14 -1.9102 -12.0622 7.3036 25 1 -0.8559 -12.9222 6.7087 26 1 -2.1728 -12.4945 8.6998 27 1 -3.1567 -12.1834 6.5056 28 1 -0.3634 0.0030 1.0276 29 1 -0.3634 0.8886 -0.5164 30 1 -0.3633 -0.8914 -0.5114 31 1 4.7564 2.4041 -0.7717 32 1 6.0954 -0.0691 0.6159 33 1 6.9809 1.3566 -0.1486 34 1 5.8275 2.9391 1.4646 35 1 4.9413 1.5143 2.2298 36 1 4.4211 -1.2963 -0.0064 37 1 0.8822 -2.6144 -0.5791 38 1 2.5708 -3.1574 -0.4306 39 1 1.6735 -2.3320 2.1172 40 1 0.2899 -6.5174 2.5523 41 1 1.0816 -6.2352 5.2486 42 1 -0.6071 -5.6922 5.1000 43 1 -1.2165 -7.8694 4.0808 44 1 0.4724 -8.4117 4.2296 45 1 0.3428 -8.1368 6.6909 46 1 -1.3460 -7.5945 6.5414 47 1 -1.4427 -10.0646 9.2711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119685909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:42 Heat of formation + Delta-G solvation = -2.354087 kcal Electronic energy + Delta-G solvation = -26951.192643 eV Core-core repulsion = 22942.355490 eV Total energy + Delta-G solvation = -4008.837153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.53370 -41.68769 -39.71697 -38.10137 -37.24209 -36.26978 -35.17862 -33.90526 -33.04603 -32.04585 -29.11412 -27.94800 -27.80959 -25.73857 -24.18916 -23.92224 -23.22876 -22.36681 -21.54456 -21.13738 -20.41158 -19.52978 -18.52309 -18.04043 -17.67246 -17.27266 -16.93616 -16.64058 -16.50980 -16.29784 -16.22508 -15.85428 -15.40149 -15.23305 -14.98272 -14.80934 -14.25993 -14.21077 -13.78148 -13.69281 -13.65068 -13.48250 -13.36070 -12.94547 -12.80066 -12.72392 -12.54491 -12.43224 -12.32719 -11.92647 -11.68784 -11.57327 -11.53550 -11.24904 -11.18586 -10.83322 -10.53554 -10.49731 -10.30048 -10.17711 -9.58664 -8.18700 -6.29677 0.26084 0.49105 1.27303 1.42916 1.45159 1.45331 1.53210 1.67037 2.06340 2.42412 2.63344 2.91994 3.15279 3.20589 3.36435 3.43440 3.86740 3.98800 4.02588 4.08696 4.11545 4.18756 4.27850 4.36238 4.43500 4.53080 4.59716 4.61849 4.64998 4.81909 4.86190 4.91862 4.92191 4.99601 5.07832 5.15768 5.21795 5.22761 5.29130 5.52175 5.55920 5.71459 5.78068 5.85079 5.92763 6.21666 6.26107 6.61058 6.62853 6.86484 6.87318 7.39736 8.92847 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023883 B = 0.001586 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.089490 B =17651.377666 C =18092.984728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.366 5.366 3 N -0.315 5.315 4 C 0.093 3.907 5 C -0.098 4.098 6 C -0.150 4.150 7 C -0.167 4.167 8 C -0.248 4.248 9 C 0.060 3.940 10 C 0.189 3.811 11 N -0.688 5.688 12 C 0.523 3.477 13 O -0.530 6.530 14 C 0.501 3.499 15 O -0.549 6.549 16 N -0.684 5.684 17 C 0.127 3.873 18 C -0.106 4.106 19 C 0.024 3.976 20 C -0.544 4.544 21 H 0.065 0.935 22 C -0.001 4.001 23 N -0.933 5.933 24 Si 0.965 3.035 25 H -0.267 1.267 26 H -0.286 1.286 27 H -0.267 1.267 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.165 0.835 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.417 0.583 40 H 0.420 0.580 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.068 0.932 45 H -0.004 1.004 46 H -0.004 1.004 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.553 22.351 -22.170 33.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.149 5.149 3 N -0.138 5.138 4 C -0.072 4.072 5 C -0.118 4.118 6 C -0.188 4.188 7 C -0.205 4.205 8 C -0.278 4.278 9 C -0.068 4.068 10 C 0.065 3.935 11 N -0.342 5.342 12 C 0.303 3.697 13 O -0.407 6.407 14 C 0.282 3.718 15 O -0.428 6.428 16 N -0.337 5.337 17 C 0.004 3.996 18 C -0.144 4.144 19 C -0.014 4.014 20 C -0.582 4.582 21 H 0.083 0.917 22 C -0.199 4.199 23 N -0.573 5.573 24 Si 0.790 3.210 25 H -0.192 1.192 26 H -0.211 1.211 27 H -0.192 1.192 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.142 0.858 32 H 0.119 0.881 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.102 0.898 36 H 0.183 0.817 37 H 0.118 0.882 38 H 0.131 0.869 39 H 0.254 0.746 40 H 0.258 0.742 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.014 0.986 46 H 0.014 0.986 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.534 23.319 -22.015 33.456 hybrid contribution -0.046 -1.370 0.637 1.511 sum 9.488 21.949 -21.378 32.075 Atomic orbital electron populations 1.22203 0.72485 1.06041 1.04545 1.48730 1.07522 1.02734 1.55884 1.77299 1.02098 1.08588 1.25786 1.21742 0.92438 0.93784 0.99210 1.20263 0.89110 1.01083 1.01341 1.23124 0.94144 0.99592 1.01899 1.23046 1.03105 1.01931 0.92437 1.21442 0.96923 0.94379 1.15058 1.20975 0.91427 0.90002 1.04350 1.19963 1.03624 0.87384 0.82489 1.45717 1.65626 1.12433 1.10406 1.19802 0.78335 0.82971 0.88557 1.90788 1.51204 1.52951 1.45712 1.20295 0.78788 0.83136 0.89582 1.90771 1.52039 1.53324 1.46636 1.45865 1.64332 1.12616 1.10856 1.21477 1.00816 0.96211 0.81110 1.21639 1.01194 0.92726 0.98807 1.18941 0.95256 0.95185 0.91994 1.21662 1.44834 0.98456 0.93224 0.91696 1.25977 0.95734 1.02893 0.95288 1.70093 1.49920 1.38908 0.98354 0.85501 0.79149 0.79308 0.77080 1.19155 1.21144 1.19157 0.89990 0.88294 0.87366 0.85834 0.88068 0.86202 0.86804 0.89812 0.81720 0.88196 0.86874 0.74635 0.74187 0.91781 0.91744 0.91356 0.91366 0.98571 0.98558 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 11.27 127.77 1.44 2.32 16 2 N -0.37 -6.08 4.01 -356.04 -1.43 -7.51 16 3 N -0.31 -6.67 12.58 -47.39 -0.60 -7.26 16 4 C 0.09 1.69 6.85 43.10 0.30 1.99 16 5 C -0.10 -1.33 6.33 -11.54 -0.07 -1.40 16 6 C -0.15 -1.40 10.02 30.62 0.31 -1.09 16 7 C -0.17 -1.95 10.24 30.62 0.31 -1.63 16 8 C -0.25 -3.91 10.02 21.99 0.22 -3.69 16 9 C 0.06 0.91 6.30 41.41 0.26 1.17 16 10 C 0.19 2.37 5.85 85.64 0.50 2.88 16 11 N -0.69 -11.38 5.54 -468.14 -2.59 -13.97 16 12 C 0.52 11.45 7.89 87.27 0.69 12.13 16 13 O -0.53 -13.05 16.48 -3.26 -0.05 -13.10 16 14 C 0.50 13.52 7.89 87.27 0.69 14.21 16 15 O -0.55 -17.63 16.48 -3.24 -0.05 -17.68 16 16 N -0.68 -18.61 5.55 -464.42 -2.58 -21.19 16 17 C 0.13 4.17 5.67 86.38 0.49 4.66 16 18 C -0.11 -3.94 5.27 30.59 0.16 -3.78 16 19 C 0.02 1.21 4.97 29.85 0.15 1.36 16 20 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 21 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 22 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 23 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 24 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.11 0.65 7.14 -2.38 -0.02 0.63 16 31 H 0.12 1.50 8.14 -2.39 -0.02 1.49 16 32 H 0.10 0.93 7.15 -2.39 -0.02 0.91 16 33 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.17 1.97 7.39 -2.91 -0.02 1.95 16 37 H 0.10 1.05 7.23 -2.39 -0.02 1.03 16 38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.42 7.11 7.94 -92.71 -0.74 6.38 16 40 H 0.42 10.02 7.94 -92.71 -0.74 9.28 16 41 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 43 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 45 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 47 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -71.98 404.62 0.68 -71.31 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.47 Total: 19.95 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 6.14 Total: -0.18 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -6.91 Total: -105.72 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.11 Total: -30.78 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -71.98 0.68 -71.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119685909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.952 kcal (2) G-P(sol) polarization free energy of solvation -71.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds