Wall clock time and date at job start Tue Mar 31 2020 19:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35531 * 125.68272 * 2 1 4 4 C 1.35459 * 108.87484 * 180.02562 * 3 2 1 5 5 C 1.39831 * 107.86331 * 359.97438 * 4 3 2 6 6 C 1.37651 * 125.67685 * 180.02562 * 2 1 3 7 7 C 1.46679 * 126.23551 * 0.26399 * 6 2 1 8 8 O 1.21704 * 119.99436 * 353.93000 * 7 6 2 9 9 N 1.34775 * 120.00586 * 173.93080 * 7 6 2 10 10 C 1.46496 * 119.99913 * 185.03663 * 9 7 6 11 11 C 1.53001 * 109.46833 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47253 * 179.97438 * 11 10 9 13 13 C 1.46894 * 111.00468 * 190.00018 * 12 11 10 14 14 C 1.50701 * 109.47278 * 162.32260 * 13 12 11 15 15 O 1.21283 * 120.00218 * 1.35188 * 14 13 12 16 16 N 1.34783 * 119.99956 * 181.34669 * 14 13 12 17 17 C 1.37094 * 119.99838 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00004 * 359.97438 * 17 16 14 19 19 C 1.38958 * 119.99609 * 180.02562 * 17 16 14 20 20 N 1.31416 * 119.99524 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00173 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46751 * 90.00141 * 21 19 17 23 23 H 1.48496 * 109.46819 * 209.99859 * 21 19 17 24 24 H 1.48496 * 109.47319 * 330.00430 * 21 19 17 25 25 C 1.46902 * 110.99960 * 66.04632 * 12 11 10 26 26 C 1.53006 * 117.50010 * 127.69002 * 25 12 11 27 27 C 1.52999 * 117.49584 * 59.06872 * 25 12 11 28 28 H 1.09005 * 109.47010 * 273.83242 * 1 2 3 29 29 H 1.09004 * 109.46849 * 33.82664 * 1 2 3 30 30 H 1.08997 * 109.47738 * 153.82402 * 1 2 3 31 31 H 1.07998 * 125.56603 * 359.97438 * 3 2 1 32 32 H 1.08000 * 126.06401 * 180.02562 * 4 3 2 33 33 H 1.07995 * 126.45532 * 180.02562 * 5 4 3 34 34 H 0.97000 * 119.99624 * 5.03134 * 9 7 6 35 35 H 1.09000 * 109.47192 * 299.99275 * 10 9 7 36 36 H 1.08998 * 109.47770 * 59.99821 * 10 9 7 37 37 H 1.08994 * 109.47491 * 300.00112 * 11 10 9 38 38 H 1.08999 * 109.47237 * 60.00222 * 11 10 9 39 39 H 1.08998 * 109.47566 * 282.32694 * 13 12 11 40 40 H 1.09001 * 109.46883 * 42.32239 * 13 12 11 41 41 H 0.97003 * 119.99902 * 359.97438 * 16 14 13 42 42 H 0.97000 * 119.99395 * 179.97438 * 20 19 17 43 43 H 1.09001 * 115.55196 * 273.40805 * 25 12 11 44 44 H 1.09000 * 117.49577 * 0.02562 * 26 25 12 45 45 H 1.08997 * 117.49273 * 145.02347 * 26 25 12 46 46 H 1.08999 * 117.50070 * 214.98189 * 27 25 12 47 47 H 1.09001 * 117.49955 * 359.97438 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7092 -0.0006 5 6 3.5780 -0.6889 -0.0004 6 6 2.2677 -1.1182 -0.0005 7 6 1.8123 -2.5125 -0.0066 8 8 0.6267 -2.7657 0.0997 9 7 2.7068 -3.5131 -0.1298 10 6 2.2446 -4.8983 -0.2468 11 6 3.4519 -5.8296 -0.3739 12 7 2.9886 -7.2187 -0.4907 13 6 4.1110 -8.1595 -0.3766 14 6 3.5830 -9.5363 -0.0660 15 8 2.3878 -9.7212 0.0248 16 7 4.4389 -10.5623 0.1108 17 6 3.9585 -11.8150 0.3929 18 1 2.8942 -11.9795 0.4738 19 6 4.8410 -12.8726 0.5757 20 7 4.3805 -14.0733 0.8466 21 14 6.6819 -12.5878 0.4364 22 1 7.2290 -12.2262 1.7688 23 1 7.3393 -13.8278 -0.0487 24 1 6.9408 -11.4829 -0.5214 25 6 2.2544 -7.4250 -1.7463 26 6 2.6971 -8.5844 -2.6413 27 6 2.9971 -7.1418 -3.0536 28 1 -0.3633 0.0687 1.0254 29 1 -0.3633 0.8538 -0.5721 30 1 -0.3634 -0.9222 -0.4533 31 1 1.9083 2.1235 -0.0004 32 1 4.4133 1.3611 -0.0003 33 1 4.4583 -1.3145 -0.0003 34 1 3.6565 -3.3160 -0.1410 35 1 1.6706 -5.1661 0.6403 36 1 1.6148 -4.9978 -1.1308 37 1 4.0256 -5.5618 -1.2611 38 1 4.0820 -5.7303 0.5099 39 1 4.6609 -8.1849 -1.3174 40 1 4.7761 -7.8362 0.4242 41 1 5.3948 -10.4146 0.0378 42 1 4.9966 -14.8116 0.9738 43 1 1.1899 -7.1934 -1.7119 44 1 3.5329 -9.1942 -2.2982 45 1 1.9236 -9.1158 -3.1957 46 1 2.4211 -6.7242 -3.8794 47 1 4.0303 -6.8020 -2.9820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663705318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:02 Heat of formation + Delta-G solvation = 33.883536 kcal Electronic energy + Delta-G solvation = -28142.507509 eV Core-core repulsion = 24135.241737 eV Total energy + Delta-G solvation = -4007.265772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.67094 -39.80847 -39.12787 -37.46508 -35.42356 -33.91239 -33.52089 -32.92825 -31.63738 -30.46389 -28.89522 -26.81889 -26.50180 -24.12516 -23.67468 -22.43352 -21.93308 -20.83270 -20.28700 -19.64797 -19.13960 -18.14022 -18.10728 -17.00852 -16.34944 -16.01053 -15.92869 -15.80962 -15.23215 -14.97951 -14.69990 -14.30757 -13.95437 -13.79153 -13.68645 -13.57004 -13.50903 -13.23530 -12.73363 -12.69758 -12.64306 -12.39907 -12.33077 -12.22040 -11.89959 -11.65828 -11.29771 -11.12129 -11.04773 -10.59548 -10.50212 -10.23570 -9.96891 -9.94247 -9.51475 -9.30807 -9.09235 -8.60307 -8.54596 -8.14707 -8.00307 -6.28419 -3.79538 1.18080 2.29544 2.41154 3.02112 3.02428 3.07362 3.14512 3.15756 3.73750 3.90057 4.01669 4.11830 4.47933 4.49694 4.64341 4.65290 4.80731 4.89734 4.97958 5.03714 5.05713 5.07904 5.10774 5.13599 5.23836 5.29681 5.35684 5.51195 5.65054 5.70278 5.72888 5.79411 5.83840 5.89705 5.94697 6.12004 6.18855 6.24905 6.38809 6.42015 6.63884 6.85019 6.99942 7.16076 7.25798 7.60827 7.96167 8.17004 8.63409 8.98778 9.45201 9.87384 10.84892 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023279 B = 0.002030 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.512924 B =13789.859440 C =14170.147159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.410 5.410 3 C 0.012 3.988 4 C -0.208 4.208 5 C -0.143 4.143 6 C -0.051 4.051 7 C 0.588 3.412 8 O -0.547 6.547 9 N -0.716 5.716 10 C 0.128 3.872 11 C 0.046 3.954 12 N -0.479 5.479 13 C 0.036 3.964 14 C 0.456 3.544 15 O -0.548 6.548 16 N -0.596 5.596 17 C -0.301 4.301 18 H 0.120 0.880 19 C 0.040 3.960 20 N -0.883 5.883 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.271 1.271 25 C 0.041 3.959 26 C -0.166 4.166 27 C -0.227 4.227 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.168 0.832 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.401 0.599 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.369 0.631 42 H 0.272 0.728 43 H 0.124 0.876 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.632 29.937 -5.147 30.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.083 5.083 3 C -0.124 4.124 4 C -0.232 4.232 5 C -0.169 4.169 6 C -0.165 4.165 7 C 0.376 3.624 8 O -0.426 6.426 9 N -0.368 5.368 10 C 0.004 3.996 11 C -0.082 4.082 12 N -0.202 5.202 13 C -0.096 4.096 14 C 0.241 3.759 15 O -0.428 6.428 16 N -0.237 5.237 17 C -0.430 4.430 18 H 0.137 0.863 19 C -0.163 4.163 20 N -0.523 5.523 21 Si 0.706 3.294 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.068 4.068 26 C -0.204 4.204 27 C -0.266 4.266 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.186 0.814 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.236 0.764 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.201 0.799 42 H 0.083 0.917 43 H 0.141 0.859 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.112 0.888 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.757 29.237 -4.564 29.601 hybrid contribution 2.651 0.307 -0.730 2.767 sum 1.894 29.544 -5.294 30.074 Atomic orbital electron populations 1.22312 0.76002 1.05516 1.03897 1.43872 1.06907 1.04972 1.52544 1.22041 0.90753 0.91544 1.08021 1.20832 0.96028 0.95036 1.11279 1.21353 0.94384 0.95567 1.05605 1.20078 0.90510 0.87626 1.18267 1.16934 0.85580 0.83442 0.76426 1.90804 1.16414 1.84800 1.50587 1.45537 1.09810 1.06664 1.74749 1.21276 0.96712 0.78058 1.03528 1.22254 0.96061 0.88507 1.01363 1.61435 1.24161 1.01327 1.33257 1.22045 0.92629 0.93633 1.01267 1.19496 0.87392 0.84923 0.84085 1.90583 1.15003 1.83620 1.53551 1.42212 1.07128 1.09047 1.65278 1.19406 0.96596 0.82192 1.44774 0.86281 1.25030 0.98370 0.95114 0.97757 1.69625 1.35149 0.99937 1.47621 0.86685 0.85616 0.78385 0.78749 1.19674 1.20273 1.19624 1.22644 0.97848 1.03240 0.83073 1.23252 1.04111 0.90797 1.02194 1.23475 1.01587 1.00894 1.00682 0.90464 0.90024 0.87666 0.81447 0.83978 0.83865 0.76414 0.89971 0.90943 0.93944 0.90044 0.92632 0.89254 0.79900 0.91695 0.85885 0.87993 0.88417 0.88819 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 10.64 59.84 0.64 1.10 16 2 N -0.41 -3.73 3.16 -120.24 -0.38 -4.11 16 3 C 0.01 0.09 11.38 -16.91 -0.19 -0.11 16 4 C -0.21 -1.55 10.81 -39.98 -0.43 -1.98 16 5 C -0.14 -1.19 10.35 -39.12 -0.41 -1.59 16 6 C -0.05 -0.53 6.88 -81.98 -0.56 -1.09 16 7 C 0.59 6.99 7.77 -12.85 -0.10 6.89 16 8 O -0.55 -8.19 14.67 5.19 0.08 -8.12 16 9 N -0.72 -6.93 5.54 -61.62 -0.34 -7.27 16 10 C 0.13 1.45 5.68 -4.04 -0.02 1.43 16 11 C 0.05 0.50 4.96 -3.82 -0.02 0.49 16 12 N -0.48 -7.22 4.34 -228.09 -0.99 -8.21 16 13 C 0.04 0.57 5.00 -4.98 -0.02 0.55 16 14 C 0.46 10.05 5.84 -10.98 -0.06 9.99 16 15 O -0.55 -14.36 14.79 5.55 0.08 -14.28 16 16 N -0.60 -13.91 5.09 -10.96 -0.06 -13.96 16 17 C -0.30 -8.42 10.16 -14.93 -0.15 -8.57 16 18 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 19 C 0.04 1.09 5.50 -17.46 -0.10 0.99 16 20 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 21 Si 0.88 19.24 27.74 -169.99 -4.71 14.53 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 24 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 25 C 0.04 0.61 4.55 -67.71 -0.31 0.30 16 26 C -0.17 -2.62 8.48 -26.73 -0.23 -2.85 16 27 C -0.23 -2.80 9.26 -26.73 -0.25 -3.04 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.10 0.98 6.23 -51.93 -0.32 0.65 16 31 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.14 0.84 7.45 -52.49 -0.39 0.45 16 34 H 0.40 2.75 7.38 -40.82 -0.30 2.44 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.89 7.30 -51.93 -0.38 0.51 16 37 H 0.04 0.40 6.87 -51.93 -0.36 0.04 16 38 H 0.08 0.79 7.84 -51.93 -0.41 0.38 16 39 H 0.06 0.80 5.99 -51.93 -0.31 0.49 16 40 H 0.09 1.22 7.77 -51.93 -0.40 0.82 16 41 H 0.37 7.55 5.76 -40.82 -0.24 7.32 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.12 1.84 8.03 -51.93 -0.42 1.43 16 44 H 0.10 1.81 4.91 -51.93 -0.26 1.55 16 45 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 46 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.09 1.00 7.15 -51.93 -0.37 0.62 16 LS Contribution 382.50 15.07 5.76 5.76 Total: -1.00 -35.46 382.50 -8.67 -44.13 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -6.67 Total: 14.01 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.22 Total: 2.50 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.99 Total: -58.54 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: 0.16 Total: -22.39 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.46 -8.67 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663705318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.015 kcal (2) G-P(sol) polarization free energy of solvation -35.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds