Wall clock time and date at job start Tue Mar 31 2020 19:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35531 * 125.68272 * 2 1 4 4 C 1.35459 * 108.87484 * 180.02562 * 3 2 1 5 5 C 1.39831 * 107.86331 * 359.97438 * 4 3 2 6 6 C 1.37651 * 125.67685 * 180.02562 * 2 1 3 7 7 C 1.46679 * 126.23551 * 0.26399 * 6 2 1 8 8 O 1.21704 * 119.99436 * 353.93000 * 7 6 2 9 9 N 1.34775 * 120.00586 * 173.93080 * 7 6 2 10 10 C 1.46496 * 119.99913 * 185.03663 * 9 7 6 11 11 C 1.53001 * 109.46833 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47253 * 179.97438 * 11 10 9 13 13 C 1.46894 * 111.00468 * 190.00018 * 12 11 10 14 14 C 1.50701 * 109.47278 * 162.32260 * 13 12 11 15 15 O 1.21283 * 120.00218 * 1.35188 * 14 13 12 16 16 N 1.34783 * 119.99956 * 181.34669 * 14 13 12 17 17 C 1.37094 * 119.99838 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00004 * 359.97438 * 17 16 14 19 19 C 1.38958 * 119.99609 * 180.02562 * 17 16 14 20 20 N 1.31416 * 119.99524 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00173 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46751 * 90.00141 * 21 19 17 23 23 H 1.48496 * 109.46819 * 209.99859 * 21 19 17 24 24 H 1.48496 * 109.47319 * 330.00430 * 21 19 17 25 25 C 1.46902 * 110.99960 * 66.04632 * 12 11 10 26 26 C 1.53006 * 117.50010 * 127.69002 * 25 12 11 27 27 C 1.52999 * 117.49584 * 59.06872 * 25 12 11 28 28 H 1.09005 * 109.47010 * 273.83242 * 1 2 3 29 29 H 1.09004 * 109.46849 * 33.82664 * 1 2 3 30 30 H 1.08997 * 109.47738 * 153.82402 * 1 2 3 31 31 H 1.07998 * 125.56603 * 359.97438 * 3 2 1 32 32 H 1.08000 * 126.06401 * 180.02562 * 4 3 2 33 33 H 1.07995 * 126.45532 * 180.02562 * 5 4 3 34 34 H 0.97000 * 119.99624 * 5.03134 * 9 7 6 35 35 H 1.09000 * 109.47192 * 299.99275 * 10 9 7 36 36 H 1.08998 * 109.47770 * 59.99821 * 10 9 7 37 37 H 1.08994 * 109.47491 * 300.00112 * 11 10 9 38 38 H 1.08999 * 109.47237 * 60.00222 * 11 10 9 39 39 H 1.08998 * 109.47566 * 282.32694 * 13 12 11 40 40 H 1.09001 * 109.46883 * 42.32239 * 13 12 11 41 41 H 0.97003 * 119.99902 * 359.97438 * 16 14 13 42 42 H 0.97000 * 119.99395 * 179.97438 * 20 19 17 43 43 H 1.09001 * 115.55196 * 273.40805 * 25 12 11 44 44 H 1.09000 * 117.49577 * 0.02562 * 26 25 12 45 45 H 1.08997 * 117.49273 * 145.02347 * 26 25 12 46 46 H 1.08999 * 117.50070 * 214.98189 * 27 25 12 47 47 H 1.09001 * 117.49955 * 359.97438 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7092 -0.0006 5 6 3.5780 -0.6889 -0.0004 6 6 2.2677 -1.1182 -0.0005 7 6 1.8123 -2.5125 -0.0066 8 8 0.6267 -2.7657 0.0997 9 7 2.7068 -3.5131 -0.1298 10 6 2.2446 -4.8983 -0.2468 11 6 3.4519 -5.8296 -0.3739 12 7 2.9886 -7.2187 -0.4907 13 6 4.1110 -8.1595 -0.3766 14 6 3.5830 -9.5363 -0.0660 15 8 2.3878 -9.7212 0.0248 16 7 4.4389 -10.5623 0.1108 17 6 3.9585 -11.8150 0.3929 18 1 2.8942 -11.9795 0.4738 19 6 4.8410 -12.8726 0.5757 20 7 4.3805 -14.0733 0.8466 21 14 6.6819 -12.5878 0.4364 22 1 7.2290 -12.2262 1.7688 23 1 7.3393 -13.8278 -0.0487 24 1 6.9408 -11.4829 -0.5214 25 6 2.2544 -7.4250 -1.7463 26 6 2.6971 -8.5844 -2.6413 27 6 2.9971 -7.1418 -3.0536 28 1 -0.3633 0.0687 1.0254 29 1 -0.3633 0.8538 -0.5721 30 1 -0.3634 -0.9222 -0.4533 31 1 1.9083 2.1235 -0.0004 32 1 4.4133 1.3611 -0.0003 33 1 4.4583 -1.3145 -0.0003 34 1 3.6565 -3.3160 -0.1410 35 1 1.6706 -5.1661 0.6403 36 1 1.6148 -4.9978 -1.1308 37 1 4.0256 -5.5618 -1.2611 38 1 4.0820 -5.7303 0.5099 39 1 4.6609 -8.1849 -1.3174 40 1 4.7761 -7.8362 0.4242 41 1 5.3948 -10.4146 0.0378 42 1 4.9966 -14.8116 0.9738 43 1 1.1899 -7.1934 -1.7119 44 1 3.5329 -9.1942 -2.2982 45 1 1.9236 -9.1158 -3.1957 46 1 2.4211 -6.7242 -3.8794 47 1 4.0303 -6.8020 -2.9820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663705318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:01 Heat of formation + Delta-G solvation = 6.095574 kcal Electronic energy + Delta-G solvation = -28143.712485 eV Core-core repulsion = 24135.241737 eV Total energy + Delta-G solvation = -4008.470748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.28793 -41.09705 -40.09557 -39.03396 -36.37023 -35.88672 -34.49227 -33.71814 -33.60195 -31.38835 -29.84512 -27.84595 -27.37166 -25.86963 -24.57353 -23.30355 -23.03030 -21.57722 -21.37162 -20.99534 -20.46316 -19.82816 -18.81912 -18.12436 -17.65388 -17.22247 -16.84070 -16.76151 -16.52564 -16.05287 -15.81384 -15.42953 -15.20230 -15.08238 -14.81694 -14.61306 -14.41822 -14.37742 -14.11371 -13.92082 -13.57606 -13.23636 -13.20653 -13.17050 -13.03625 -12.88159 -12.73291 -12.38669 -12.28294 -12.12439 -11.96014 -11.60360 -11.46552 -11.16012 -11.04277 -10.36101 -10.20697 -10.18721 -9.66680 -9.18244 -9.15379 -8.37365 -5.97375 0.48990 1.30936 1.37615 1.45719 1.63506 1.85266 2.03286 2.24667 2.26207 2.38132 2.75636 2.88655 3.16631 3.25086 3.72861 3.79022 3.94900 3.97626 3.99238 4.05089 4.14169 4.21179 4.22084 4.36584 4.36753 4.44681 4.50765 4.53979 4.57588 4.72725 4.73145 4.90008 4.96781 4.97770 5.15698 5.16921 5.20502 5.29516 5.34186 5.56524 5.83958 5.88816 6.02223 6.04287 6.11094 6.33116 6.52339 6.64711 6.94535 7.16545 7.45765 8.05346 8.80615 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023279 B = 0.002030 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.512924 B =13789.859440 C =14170.147159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.423 5.423 3 C 0.020 3.980 4 C -0.221 4.221 5 C -0.133 4.133 6 C -0.091 4.091 7 C 0.583 3.417 8 O -0.591 6.591 9 N -0.700 5.700 10 C 0.137 3.863 11 C 0.055 3.945 12 N -0.506 5.506 13 C 0.049 3.951 14 C 0.457 3.543 15 O -0.598 6.598 16 N -0.597 5.597 17 C -0.321 4.321 18 H 0.053 0.947 19 C -0.020 4.020 20 N -0.939 5.939 21 Si 0.965 3.035 22 H -0.257 1.257 23 H -0.278 1.278 24 H -0.230 1.230 25 C 0.027 3.973 26 C -0.197 4.197 27 C -0.181 4.181 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.200 0.800 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.418 0.582 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.388 0.612 42 H 0.277 0.723 43 H 0.109 0.891 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.111 0.889 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.917 34.013 -6.113 35.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.096 5.096 3 C -0.116 4.116 4 C -0.244 4.244 5 C -0.160 4.160 6 C -0.204 4.204 7 C 0.372 3.628 8 O -0.474 6.474 9 N -0.353 5.353 10 C 0.013 3.987 11 C -0.072 4.072 12 N -0.229 5.229 13 C -0.082 4.082 14 C 0.244 3.756 15 O -0.481 6.481 16 N -0.240 5.240 17 C -0.450 4.450 18 H 0.071 0.929 19 C -0.218 4.218 20 N -0.580 5.580 21 Si 0.785 3.215 22 H -0.182 1.182 23 H -0.203 1.203 24 H -0.153 1.153 25 C -0.082 4.082 26 C -0.234 4.234 27 C -0.220 4.220 28 H 0.097 0.903 29 H 0.130 0.870 30 H 0.097 0.903 31 H 0.217 0.783 32 H 0.183 0.817 33 H 0.184 0.816 34 H 0.256 0.744 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.143 0.857 41 H 0.223 0.777 42 H 0.087 0.913 43 H 0.127 0.873 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.129 0.871 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.566 33.352 -5.542 33.997 hybrid contribution 1.136 -0.886 -0.411 1.498 sum 4.703 32.466 -5.953 33.341 Atomic orbital electron populations 1.22330 0.75667 1.05463 1.04270 1.44115 1.07445 1.05263 1.52772 1.22702 0.90737 0.92396 1.05767 1.21221 0.96954 0.94975 1.11260 1.21745 0.94180 0.96477 1.03598 1.20050 0.91707 0.87095 1.21561 1.17320 0.85177 0.84591 0.75684 1.90780 1.18265 1.85521 1.52806 1.45321 1.10469 1.05532 1.73954 1.21021 0.96919 0.79196 1.01592 1.22266 0.95762 0.85607 1.03599 1.61254 1.24540 1.03356 1.33766 1.21924 0.92990 0.89449 1.03822 1.20774 0.86645 0.86952 0.81188 1.90566 1.17637 1.84939 1.54959 1.42026 1.08283 1.07689 1.66027 1.18949 0.94133 0.85125 1.46793 0.92910 1.26125 1.05266 0.94011 0.96365 1.69821 1.37881 1.01422 1.48866 0.85361 0.76318 0.79568 0.80232 1.18198 1.20319 1.15273 1.22590 0.97937 1.03170 0.84456 1.23174 1.03673 0.92413 1.04149 1.23514 1.02549 0.96914 0.99048 0.90341 0.87004 0.90295 0.78272 0.81731 0.81607 0.74445 0.92906 0.92222 0.91058 0.87971 0.89782 0.85701 0.77674 0.91343 0.87296 0.89932 0.89797 0.87092 0.87088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.90 10.64 127.77 1.36 2.26 16 2 N -0.42 -7.10 3.16 -534.32 -1.69 -8.79 16 3 C 0.02 0.23 11.38 83.48 0.95 1.18 16 4 C -0.22 -2.56 10.81 22.01 0.24 -2.32 16 5 C -0.13 -1.85 10.35 22.57 0.23 -1.61 16 6 C -0.09 -1.78 6.88 40.35 0.28 -1.50 16 7 C 0.58 13.79 7.77 86.45 0.67 14.46 16 8 O -0.59 -18.61 14.67 -4.36 -0.06 -18.67 16 9 N -0.70 -12.52 5.54 -467.08 -2.59 -15.10 16 10 C 0.14 3.00 5.68 86.38 0.49 3.49 16 11 C 0.05 1.01 4.96 86.30 0.43 1.44 16 12 N -0.51 -14.39 4.34 -875.53 -3.80 -18.19 16 13 C 0.05 1.43 5.00 85.56 0.43 1.86 16 14 C 0.46 20.24 5.84 87.66 0.51 20.75 16 15 O -0.60 -33.02 14.79 -3.04 -0.04 -33.06 16 16 N -0.60 -27.79 5.09 -306.98 -1.56 -29.36 16 17 C -0.32 -18.79 10.16 84.04 0.85 -17.93 16 18 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 19 C -0.02 -1.10 5.50 84.93 0.47 -0.64 16 20 N -0.94 -57.16 13.96 21.67 0.30 -56.86 16 21 Si 0.97 38.69 27.74 68.60 1.90 40.60 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 23 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.23 -7.61 6.52 99.48 0.65 -6.97 16 25 C 0.03 0.80 4.55 44.92 0.20 1.00 16 26 C -0.20 -6.18 8.48 30.60 0.26 -5.92 16 27 C -0.18 -3.93 9.26 30.59 0.28 -3.65 16 28 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.08 1.56 6.23 -2.39 -0.01 1.54 16 31 H 0.20 0.79 8.06 -2.91 -0.02 0.77 16 32 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.17 1.32 7.45 -2.91 -0.02 1.30 16 34 H 0.42 4.45 7.38 -92.71 -0.68 3.76 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.47 7.30 -2.39 -0.02 1.45 16 37 H 0.07 0.96 6.87 -2.39 -0.02 0.95 16 38 H 0.10 1.51 7.84 -2.39 -0.02 1.49 16 39 H 0.08 2.03 5.99 -2.39 -0.01 2.02 16 40 H 0.13 2.80 7.77 -2.39 -0.02 2.79 16 41 H 0.39 14.83 5.76 -92.71 -0.53 14.29 16 42 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.11 3.41 8.03 -2.39 -0.02 3.39 16 44 H 0.08 2.90 4.91 -2.39 -0.01 2.89 16 45 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 46 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.11 1.93 7.15 -2.39 -0.02 1.91 16 Total: -1.00 -86.87 382.50 -0.15 -87.02 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: -0.26 Total: 39.56 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 7.66 Total: 12.86 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -9.34 Total: -128.30 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -0.11 Total: -51.73 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 1.90 Total: 40.60 kcal Total: -86.87 -0.15 -87.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663705318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.112 kcal (2) G-P(sol) polarization free energy of solvation -86.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds