Wall clock time and date at job start Tue Mar 31 2020 18:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46908 * 110.99926 * 2 1 4 4 C 1.46898 * 110.99768 * 123.95692 * 2 1 3 5 5 C 1.52996 * 109.47236 * 66.04906 * 4 2 1 6 6 C 1.52998 * 109.47334 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.47278 * 179.97438 * 6 5 4 8 8 C 1.46498 * 119.99568 * 269.99443 * 7 6 5 9 9 C 1.34770 * 120.00251 * 89.99587 * 7 6 5 10 10 O 1.21364 * 119.99842 * 2.52006 * 9 7 6 11 11 C 1.49369 * 120.00217 * 182.51722 * 9 7 6 12 12 O 1.21353 * 119.99802 * 354.04760 * 11 9 7 13 13 N 1.34775 * 119.99909 * 174.05329 * 11 9 7 14 14 C 1.39115 * 119.99659 * 183.06139 * 13 11 9 15 15 C 1.39706 * 119.58190 * 341.10472 * 14 13 11 16 16 C 1.38651 * 119.49400 * 180.02562 * 15 14 13 17 17 C 1.38350 * 118.67036 * 359.72210 * 16 15 14 18 18 C 1.40590 * 119.13476 * 0.53501 * 17 16 15 19 19 C 1.41340 * 119.78572 * 179.72839 * 18 17 16 20 20 H 1.07997 * 119.99896 * 5.66247 * 19 18 17 21 21 C 1.40033 * 120.00110 * 185.66632 * 19 18 17 22 22 N 1.30745 * 119.99684 * 183.80835 * 21 19 18 23 23 Si 1.86792 * 119.99956 * 3.80021 * 21 19 18 24 24 H 1.48497 * 109.47290 * 180.02562 * 23 21 19 25 25 H 1.48497 * 109.47503 * 300.00574 * 23 21 19 26 26 H 1.48501 * 109.47467 * 60.00451 * 23 21 19 27 27 N 1.31942 * 119.57787 * 161.11701 * 14 13 11 28 28 H 1.09000 * 109.47078 * 296.04623 * 1 2 3 29 29 H 1.09006 * 109.47099 * 56.03931 * 1 2 3 30 30 H 1.08992 * 109.47189 * 176.04393 * 1 2 3 31 31 H 1.08998 * 109.46651 * 183.95590 * 3 2 1 32 32 H 1.09000 * 109.47089 * 303.95599 * 3 2 1 33 33 H 1.09000 * 109.46794 * 63.95605 * 3 2 1 34 34 H 1.08999 * 109.46906 * 306.03884 * 4 2 1 35 35 H 1.09004 * 109.46421 * 186.04384 * 4 2 1 36 36 H 1.08993 * 109.47632 * 59.99088 * 5 4 2 37 37 H 1.09007 * 109.46698 * 299.99565 * 5 4 2 38 38 H 1.09002 * 109.47428 * 59.98951 * 6 5 4 39 39 H 1.09007 * 109.46805 * 299.99416 * 6 5 4 40 40 H 1.09004 * 109.47340 * 263.89156 * 8 7 6 41 41 H 1.08993 * 109.47576 * 23.89936 * 8 7 6 42 42 H 1.09006 * 109.47145 * 143.89518 * 8 7 6 43 43 H 0.96996 * 120.00085 * 3.06774 * 13 11 9 44 44 H 1.08003 * 120.24973 * 359.97438 * 15 14 13 45 45 H 1.07998 * 120.66560 * 180.02562 * 16 15 14 46 46 H 1.07999 * 120.42964 * 180.28577 * 17 16 15 47 47 H 0.96996 * 119.99925 * 354.92453 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9702 6 6 2.1792 -3.0404 2.1553 7 7 1.8302 -4.4542 1.9954 8 6 0.5732 -4.9653 2.5476 9 6 2.6654 -5.2846 1.3403 10 8 3.7275 -4.8717 0.9228 11 6 2.2840 -6.7131 1.1282 12 8 1.2743 -7.1535 1.6374 13 7 3.0612 -7.5128 0.3713 14 6 2.6733 -8.8252 0.1213 15 6 1.7229 -9.4325 0.9457 16 6 1.3380 -10.7407 0.6951 17 6 1.9077 -11.4067 -0.3753 18 6 2.8629 -10.7427 -1.1648 19 6 3.4579 -11.4121 -2.2582 20 1 3.1138 -12.3958 -2.5413 21 6 4.4937 -10.7997 -2.9745 22 7 4.9935 -11.3859 -4.0309 23 14 5.1612 -9.1453 -2.4208 24 1 6.2446 -8.7155 -3.3409 25 1 4.0688 -8.1395 -2.4392 26 1 5.7004 -9.2652 -1.0424 27 7 3.2080 -9.4807 -0.8913 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5741 -0.8524 30 1 -0.3633 -1.0251 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8724 0.9233 34 1 1.5611 -0.3872 2.0627 35 1 3.0797 -0.6611 1.1755 36 1 2.0657 -2.6213 0.0450 37 1 0.5471 -2.3475 0.9322 38 1 1.7445 -2.6615 3.0803 39 1 3.2635 -2.9356 2.1938 40 1 0.7596 -5.4084 3.5259 41 1 -0.1387 -4.1462 2.6493 42 1 0.1632 -5.7218 1.8783 43 1 3.8910 -7.1734 0.0011 44 1 1.2918 -8.8872 1.7723 45 1 0.6046 -11.2284 1.3201 46 1 1.6253 -12.4248 -0.5991 47 1 4.6989 -12.2770 -4.2760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890129708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:25 Heat of formation + Delta-G solvation = -14.731668 kcal Electronic energy + Delta-G solvation = -28535.053525 eV Core-core repulsion = 24525.679640 eV Total energy + Delta-G solvation = -4009.373885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.04859 -39.37527 -38.18254 -37.86753 -36.29020 -34.65091 -33.53484 -32.40097 -31.18167 -29.75394 -27.99118 -27.57000 -26.94473 -25.52726 -24.55386 -22.98635 -21.88252 -21.29911 -20.93798 -19.71319 -18.44657 -17.91447 -17.16790 -16.50900 -16.26820 -16.05219 -15.84214 -15.36993 -15.18024 -15.07458 -14.61475 -14.43558 -14.12821 -13.94732 -13.65361 -13.17628 -13.00739 -12.87055 -12.80211 -12.75541 -12.54917 -12.26974 -12.25812 -12.07839 -11.93700 -11.82638 -11.72649 -11.40547 -10.90241 -10.88696 -10.76562 -10.34192 -10.12246 -9.66688 -9.22532 -9.09548 -8.86589 -8.74039 -8.62487 -7.77898 -7.57729 -7.25741 -4.82814 1.28444 2.21361 2.47778 2.58400 3.27880 3.38169 3.57690 3.62515 3.65706 3.98576 4.32423 4.39277 4.53644 4.60028 4.67736 4.74983 4.92417 4.96776 5.00311 5.04759 5.17321 5.21077 5.26363 5.35206 5.45741 5.49329 5.50580 5.55679 5.71416 5.77274 5.78456 5.90298 6.03449 6.17079 6.32937 6.43957 6.45678 6.63026 6.64590 6.84150 7.00147 7.06422 7.34048 7.42243 7.51645 7.66474 7.69403 8.03613 8.10169 8.29246 8.58980 9.32883 9.97120 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.002716 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.776414 B =10307.459106 C =11504.155634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.135 4.135 6 C 0.114 3.886 7 N -0.588 5.588 8 C 0.065 3.935 9 C 0.511 3.489 10 O -0.514 6.514 11 C 0.509 3.491 12 O -0.491 6.491 13 N -0.620 5.620 14 C 0.380 3.620 15 C -0.315 4.315 16 C -0.036 4.036 17 C -0.271 4.271 18 C 0.272 3.728 19 C -0.472 4.472 20 H 0.085 0.915 21 C 0.044 3.956 22 N -0.802 5.802 23 Si 1.151 2.849 24 H -0.330 1.330 25 H -0.280 1.280 26 H -0.293 1.293 27 N -0.595 5.595 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.419 0.581 44 H 0.149 0.851 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.862 20.423 12.132 25.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.124 4.124 4 C -0.070 4.070 5 C -0.173 4.173 6 C -0.008 4.008 7 N -0.321 5.321 8 C -0.077 4.077 9 C 0.293 3.707 10 O -0.389 6.389 11 C 0.291 3.709 12 O -0.366 6.366 13 N -0.265 5.265 14 C 0.149 3.851 15 C -0.339 4.339 16 C -0.060 4.060 17 C -0.293 4.293 18 C 0.148 3.852 19 C -0.504 4.504 20 H 0.103 0.897 21 C -0.178 4.178 22 N -0.424 5.424 23 Si 0.986 3.014 24 H -0.263 1.263 25 H -0.207 1.207 26 H -0.221 1.221 27 N -0.320 5.320 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.126 0.874 43 H 0.256 0.744 44 H 0.166 0.834 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.221 21.575 10.850 24.938 hybrid contribution -1.756 -1.316 1.353 2.578 sum -7.977 20.259 12.203 24.960 Atomic orbital electron populations 1.22451 0.87330 1.02584 1.00367 1.61929 1.08116 1.13870 1.43275 1.22386 1.00965 0.88596 1.00412 1.22044 1.00557 0.93198 0.91158 1.21981 1.01596 0.93982 0.99786 1.21549 1.02308 0.78828 0.98148 1.47628 1.21383 1.08939 1.54174 1.22416 0.83991 1.00468 1.00792 1.20044 0.84539 0.86729 0.79384 1.90782 1.22582 1.77013 1.48507 1.19933 0.83876 0.86818 0.80310 1.90541 1.24695 1.73938 1.47440 1.42937 1.24553 1.10771 1.48280 1.18079 0.93113 0.82782 0.91096 1.21806 1.08217 0.97311 1.06602 1.20955 0.96135 0.93584 0.95320 1.21659 1.05665 1.00906 1.01087 1.18274 0.89404 0.85811 0.91719 1.20752 1.15488 1.03747 1.10434 0.89726 1.27790 0.92560 1.06594 0.90861 1.70647 1.37866 1.14580 1.19262 0.81892 0.73530 0.72655 0.73359 1.26297 1.20746 1.22112 1.66012 1.34939 1.11076 1.20011 0.95708 0.91396 0.90977 0.91185 0.91305 0.95742 0.94713 0.90334 0.90214 0.91492 0.90046 0.89228 0.91946 0.91681 0.87424 0.74409 0.83412 0.87400 0.87524 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.32 60.07 0.56 0.71 16 2 N -0.55 -4.67 5.02 -251.25 -1.26 -5.93 16 3 C 0.02 0.17 9.57 60.07 0.57 0.74 16 4 C 0.06 0.45 4.96 -3.83 -0.02 0.44 16 5 C -0.13 -1.19 5.46 -26.73 -0.15 -1.33 16 6 C 0.11 1.01 5.40 -4.04 -0.02 0.99 16 7 N -0.59 -6.66 2.87 -182.11 -0.52 -7.19 16 8 C 0.07 0.62 9.50 59.85 0.57 1.19 16 9 C 0.51 7.59 7.73 -11.63 -0.09 7.50 16 10 O -0.51 -8.59 16.05 5.49 0.09 -8.50 16 11 C 0.51 8.67 7.66 -11.62 -0.09 8.58 16 12 O -0.49 -8.41 9.76 5.49 0.05 -8.36 16 13 N -0.62 -12.23 5.40 -11.83 -0.06 -12.29 16 14 C 0.38 8.70 7.53 -155.08 -1.17 7.53 16 15 C -0.31 -6.80 8.92 -38.88 -0.35 -7.14 16 16 C -0.04 -0.75 10.15 -39.39 -0.40 -1.15 16 17 C -0.27 -6.31 9.83 -38.65 -0.38 -6.69 16 18 C 0.27 7.10 6.40 -85.00 -0.54 6.55 16 19 C -0.47 -12.81 9.57 -37.73 -0.36 -13.17 16 20 H 0.08 2.27 8.05 -52.49 -0.42 1.85 16 21 C 0.04 1.19 5.52 -17.34 -0.10 1.09 16 22 N -0.80 -21.87 13.65 55.55 0.76 -21.11 16 23 Si 1.15 28.52 25.59 -169.99 -4.35 24.17 16 24 H -0.33 -8.10 7.11 56.52 0.40 -7.70 16 25 H -0.28 -6.89 6.63 56.52 0.37 -6.52 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 N -0.59 -15.17 4.55 -10.28 -0.05 -15.22 16 28 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.07 0.53 6.47 -51.93 -0.34 0.20 16 31 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 33 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 34 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 35 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.56 6.55 -51.93 -0.34 0.22 16 38 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 39 H 0.09 0.87 7.39 -51.93 -0.38 0.49 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.45 8.03 -51.93 -0.42 0.03 16 42 H 0.11 1.26 5.44 -51.93 -0.28 0.98 16 43 H 0.42 8.00 8.30 -40.82 -0.34 7.66 16 44 H 0.15 3.00 5.05 -53.52 -0.27 2.73 16 45 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 46 H 0.11 2.31 8.06 -52.49 -0.42 1.88 16 47 H 0.28 7.36 8.72 -40.82 -0.36 7.01 16 LS Contribution 382.57 15.07 5.77 5.77 Total: -1.00 -30.51 382.57 -8.57 -39.07 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.03 Total: 3.76 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -1.96 Total: 5.83 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -1.14 Total: -61.74 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: 0.14 Total: -16.86 kcal Atomic # 14 Polarization: 28.52 SS G_CDS: -4.35 Total: 24.17 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.51 -8.57 -39.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890129708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.343 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds