Wall clock time and date at job start Tue Mar 31 2020 18:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34955 * 126.54363 * 2 1 4 4 O 1.35209 * 125.48859 * 0.02562 * 3 2 1 5 5 N 1.31529 * 109.01443 * 180.02562 * 3 2 1 6 6 C 1.33228 * 109.76499 * 359.72405 * 5 3 2 7 7 C 1.36721 * 107.95908 * 0.44076 * 6 5 3 8 8 C 1.46382 * 126.82541 * 179.82889 * 7 6 5 9 9 O 1.21733 * 120.00127 * 188.10251 * 8 7 6 10 10 N 1.34775 * 119.99878 * 8.11007 * 8 7 6 11 11 C 1.48659 * 125.78468 * 358.45497 * 10 8 7 12 12 C 1.53058 * 103.44408 * 155.88212 * 11 10 8 13 13 H 1.09003 * 110.55329 * 284.34710 * 12 11 10 14 14 C 1.51615 * 117.50020 * 156.26186 * 12 11 10 15 15 C 1.53813 * 107.02455 * 183.30521 * 14 12 11 16 16 C 1.52522 * 111.69843 * 57.53334 * 15 14 12 17 17 C 1.51892 * 112.21292 * 306.64548 * 16 15 14 18 18 H 1.08999 * 108.49653 * 296.67962 * 17 16 15 19 19 N 1.46505 * 110.39074 * 176.07878 * 17 16 15 20 20 C 1.36936 * 119.99449 * 85.89590 * 19 17 16 21 21 H 1.08001 * 120.00631 * 0.02562 * 20 19 17 22 22 C 1.38817 * 119.99573 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00069 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99684 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47394 * 60.00281 * 24 22 20 26 26 H 1.48507 * 109.46758 * 180.02562 * 24 22 20 27 27 H 1.48492 * 109.47229 * 299.99750 * 24 22 20 28 28 C 1.51444 * 108.04852 * 55.83467 * 17 16 15 29 29 H 1.08997 * 109.87499 * 55.85409 * 28 17 16 30 30 C 1.48236 * 125.78540 * 178.76716 * 10 8 7 31 31 H 1.08998 * 109.47133 * 274.75012 * 1 2 3 32 32 H 1.08995 * 109.47575 * 34.75379 * 1 2 3 33 33 H 1.09000 * 109.47158 * 154.75372 * 1 2 3 34 34 H 0.96702 * 113.99426 * 90.00405 * 4 3 2 35 35 H 1.07997 * 126.02264 * 180.30113 * 6 5 3 36 36 H 1.09004 * 110.62979 * 274.37014 * 11 10 8 37 37 H 1.09003 * 110.62895 * 37.38912 * 11 10 8 38 38 H 1.09001 * 109.94108 * 302.68461 * 14 12 11 39 39 H 1.09002 * 109.94588 * 63.83909 * 14 12 11 40 40 H 1.08993 * 109.03833 * 178.10758 * 15 14 12 41 41 H 1.09008 * 109.02906 * 297.03963 * 15 14 12 42 42 H 1.08998 * 109.04180 * 66.52100 * 16 15 14 43 43 H 1.09004 * 109.04553 * 185.46662 * 16 15 14 44 44 H 0.97001 * 119.99927 * 265.89356 * 19 17 16 45 45 H 0.97002 * 119.99787 * 179.97438 * 23 22 20 46 46 H 1.09000 * 110.17260 * 295.65404 * 30 10 8 47 47 H 1.09003 * 110.17013 * 57.38119 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2685 1.0842 0.0000 4 8 1.8514 2.3704 0.0005 5 7 3.5227 0.6881 -0.0006 6 6 3.5747 -0.6432 0.0051 7 6 2.2916 -1.1152 -0.0005 8 6 1.8727 -2.5178 -0.0008 9 8 0.6991 -2.8025 -0.1548 10 7 2.7862 -3.4939 0.1694 11 6 4.2501 -3.2952 0.3353 12 6 4.6981 -4.5550 1.0801 13 1 4.4122 -4.5006 2.1306 14 6 6.1506 -4.9684 0.9459 15 6 6.3147 -6.2924 1.7114 16 6 5.3725 -7.3694 1.1836 17 6 3.9267 -6.9047 1.1569 18 1 3.6088 -6.7047 2.1801 19 7 3.0711 -7.9324 0.5583 20 6 2.5658 -8.9403 1.3354 21 1 2.7976 -8.9774 2.3896 22 6 1.7548 -9.9137 0.7684 23 7 1.4711 -9.8677 -0.5160 24 14 1.0660 -11.2891 1.8284 25 1 0.2285 -10.7093 2.9090 26 1 0.2374 -12.1924 0.9900 27 1 2.1848 -12.0592 2.4284 28 6 3.8575 -5.6334 0.3368 29 1 4.2734 -5.8092 -0.6552 30 6 2.5024 -4.9481 0.2166 31 1 -0.3633 0.0851 1.0241 32 1 -0.3634 0.8443 -0.5858 33 1 -0.3633 -0.9295 -0.4383 34 1 1.7305 2.7442 0.8841 35 1 4.4723 -1.2437 0.0107 36 1 4.7410 -3.2281 -0.6356 37 1 4.4517 -2.4048 0.9310 38 1 6.4003 -5.1132 -0.1052 39 1 6.7962 -4.2044 1.3792 40 1 7.3432 -6.6379 1.6078 41 1 6.1019 -6.1214 2.7668 42 1 5.6652 -7.6307 0.1667 43 1 5.4540 -8.2540 1.8153 44 1 2.8627 -7.8988 -0.3884 45 1 0.9046 -10.5481 -0.9123 46 1 1.8844 -5.1826 1.0833 47 1 2.0007 -5.2630 -0.6985 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992774708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:40 Heat of formation + Delta-G solvation = 18.189778 kcal Electronic energy + Delta-G solvation = -29525.978123 eV Core-core repulsion = 25518.031819 eV Total energy + Delta-G solvation = -4007.946304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.53543 -40.37860 -38.58416 -37.61507 -35.81227 -34.32772 -33.97931 -31.66521 -31.12530 -29.61696 -28.58661 -27.45306 -26.75778 -25.14724 -23.56935 -22.44070 -22.09336 -20.86494 -20.38767 -19.74127 -19.58523 -18.82820 -17.29260 -17.10407 -16.77340 -16.23001 -15.84431 -15.28654 -15.05968 -14.70556 -14.47563 -14.29997 -14.07289 -13.89345 -13.67419 -13.15089 -13.01213 -12.98295 -12.89117 -12.66610 -12.48499 -12.40986 -12.11051 -11.82042 -11.38928 -11.01567 -10.89537 -10.81271 -10.55026 -10.51194 -10.27280 -10.24214 -10.17484 -10.09586 -9.93568 -9.78195 -9.47854 -8.90286 -8.84388 -8.57903 -6.98656 -5.77349 -3.06623 0.96137 1.86380 2.37205 2.95152 3.17376 3.43500 3.48181 3.48568 3.49070 4.19084 4.40471 4.49622 4.56172 4.66761 4.80374 4.88386 4.89576 5.00903 5.20491 5.28521 5.31351 5.33571 5.43663 5.54468 5.57110 5.66508 5.69859 5.79517 5.85253 5.89511 6.00664 6.06490 6.07373 6.11470 6.16071 6.19454 6.33420 6.40374 6.51899 6.57787 6.62181 6.86099 7.07101 7.15060 7.42341 7.48516 7.68773 8.05860 8.40653 9.52196 10.08290 10.42912 11.44966 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015780 B = 0.002952 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.023059 B = 9483.544085 C =10938.625081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.428 5.428 3 C 0.391 3.609 4 O -0.440 6.440 5 N -0.488 5.488 6 C 0.036 3.964 7 C -0.067 4.067 8 C 0.605 3.395 9 O -0.544 6.544 10 N -0.605 5.605 11 C 0.093 3.907 12 C -0.107 4.107 13 H 0.086 0.914 14 C -0.100 4.100 15 C -0.114 4.114 16 C -0.138 4.138 17 C 0.196 3.804 18 H 0.047 0.953 19 N -0.722 5.722 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 C -0.103 4.103 29 H 0.080 0.920 30 C 0.130 3.870 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.404 0.596 35 H 0.199 0.801 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.077 0.923 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.195 21.323 3.159 22.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.121 5.121 3 C 0.092 3.908 4 O -0.241 6.241 5 N -0.216 5.216 6 C -0.118 4.118 7 C -0.183 4.183 8 C 0.393 3.607 9 O -0.423 6.423 10 N -0.338 5.338 11 C -0.029 4.029 12 C -0.126 4.126 13 H 0.105 0.895 14 C -0.138 4.138 15 C -0.152 4.152 16 C -0.179 4.179 17 C 0.086 3.914 18 H 0.065 0.935 19 N -0.362 5.362 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.122 4.122 29 H 0.098 0.902 30 C 0.010 3.990 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.132 0.868 34 H 0.261 0.739 35 H 0.215 0.785 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.218 0.782 45 H 0.066 0.934 46 H 0.095 0.905 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.849 21.685 2.576 22.608 hybrid contribution -1.299 -1.131 0.693 1.857 sum 4.550 20.554 3.269 21.304 Atomic orbital electron populations 1.22369 0.75079 1.06609 1.04103 1.45639 1.08513 1.05522 1.52410 1.20248 0.84573 0.81355 1.04638 1.84811 1.87045 1.17979 1.34248 1.70333 1.16406 1.12923 1.21958 1.23322 0.96241 0.90153 1.02045 1.20576 0.91087 0.88309 1.18331 1.16159 0.84736 0.82307 0.77487 1.90820 1.16874 1.83387 1.51248 1.48790 1.07207 1.07071 1.70698 1.22610 0.80338 0.99207 1.00765 1.22101 0.96681 0.93601 1.00247 0.89539 1.21303 0.94064 0.97293 1.01150 1.21528 0.99384 0.94814 0.99497 1.21980 0.96811 0.97859 1.01231 1.19504 0.90125 0.86521 0.95262 0.93455 1.42383 1.56619 1.27776 1.09460 1.19162 1.23565 1.02236 0.92182 0.91277 1.24725 1.00755 0.99324 0.95914 1.69642 1.41674 1.36475 1.10155 0.86308 0.78708 0.82104 0.79289 1.21283 1.21742 1.21325 1.22155 0.93762 0.95828 1.00503 0.90198 1.21660 0.97867 0.76092 1.03415 0.90137 0.89290 0.86843 0.73888 0.78504 0.90303 0.89341 0.91482 0.91880 0.92574 0.92547 0.92739 0.91889 0.78182 0.93446 0.90452 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 10.84 59.84 0.65 1.20 16 2 N -0.43 -4.96 3.20 -122.13 -0.39 -5.35 16 3 C 0.39 4.39 9.01 -89.59 -0.81 3.58 16 4 O -0.44 -3.60 13.53 -17.32 -0.23 -3.84 16 5 N -0.49 -6.10 11.22 -14.62 -0.16 -6.26 16 6 C 0.04 0.41 10.23 -17.49 -0.18 0.24 16 7 C -0.07 -0.86 6.87 -81.97 -0.56 -1.42 16 8 C 0.60 9.10 7.82 -12.98 -0.10 9.00 16 9 O -0.54 -9.87 15.14 5.16 0.08 -9.79 16 10 N -0.60 -8.29 3.38 -172.51 -0.58 -8.87 16 11 C 0.09 0.93 4.94 -2.82 -0.01 0.92 16 12 C -0.11 -1.18 2.47 -89.89 -0.22 -1.40 16 13 H 0.09 1.00 8.06 -51.93 -0.42 0.58 16 14 C -0.10 -0.98 5.75 -27.01 -0.16 -1.14 16 15 C -0.11 -1.34 5.84 -26.55 -0.16 -1.50 16 16 C -0.14 -2.20 5.40 -27.54 -0.15 -2.35 16 17 C 0.20 3.51 2.41 -69.28 -0.17 3.35 16 18 H 0.05 0.89 8.01 -51.93 -0.42 0.47 16 19 N -0.72 -16.97 5.06 -54.74 -0.28 -17.25 16 20 C -0.24 -6.41 9.95 -15.06 -0.15 -6.56 16 21 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 24 Si 0.90 22.13 29.55 -169.99 -5.02 17.10 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 C -0.10 -1.50 1.82 -90.35 -0.16 -1.67 16 29 H 0.08 1.18 7.97 -51.93 -0.41 0.77 16 30 C 0.13 2.10 6.51 -3.43 -0.02 2.07 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.11 1.28 6.14 -51.93 -0.32 0.96 16 34 H 0.40 1.11 9.06 45.56 0.41 1.53 16 35 H 0.20 1.72 4.70 -52.49 -0.25 1.47 16 36 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 37 H 0.09 0.73 5.34 -51.93 -0.28 0.45 16 38 H 0.07 0.65 8.00 -51.93 -0.42 0.24 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.38 9.73 7.81 -40.82 -0.32 9.41 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.08 1.40 8.08 -51.93 -0.42 0.98 16 47 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -34.17 373.33 -8.72 -42.89 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.18 Total: 8.75 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -2.30 Total: 3.91 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -0.69 Total: -64.66 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.16 Total: -13.62 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.17 -8.72 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992774708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.077 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds