Wall clock time and date at job start Tue Mar 31 2020 18:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46512 * 1 3 3 C 1.36936 * 119.99332 * 2 1 4 4 H 1.08003 * 119.99201 * 212.04293 * 3 2 1 5 5 C 1.38814 * 120.00426 * 32.05175 * 3 2 1 6 6 N 1.31613 * 119.99960 * 6.23101 * 5 3 2 7 7 Si 1.86796 * 119.99800 * 186.24047 * 5 3 2 8 8 H 1.48500 * 109.47612 * 59.99437 * 7 5 3 9 9 H 1.48498 * 109.47068 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47092 * 299.99580 * 7 5 3 11 11 C 1.46490 * 119.99900 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.46879 * 90.00518 * 11 2 1 13 13 C 1.53005 * 109.46908 * 179.97438 * 12 11 2 14 14 N 1.46497 * 109.46791 * 180.02562 * 13 12 11 15 15 C 1.46499 * 120.00037 * 270.00065 * 14 13 12 16 16 C 1.34776 * 120.00100 * 90.00068 * 14 13 12 17 17 O 1.21556 * 120.00099 * 354.79933 * 16 14 13 18 18 C 1.47867 * 120.00308 * 174.80246 * 16 14 13 19 19 C 1.39615 * 120.10723 * 328.49811 * 18 16 14 20 20 C 1.37978 * 119.99614 * 180.02562 * 19 18 16 21 21 C 1.38261 * 120.21586 * 359.74661 * 20 19 18 22 22 C 1.38937 * 120.22515 * 0.51316 * 21 20 19 23 23 N 1.39982 * 119.99815 * 179.76372 * 22 21 20 24 24 C 1.34779 * 119.99793 * 215.10844 * 23 22 21 25 25 N 1.34777 * 119.99703 * 174.80824 * 24 23 22 26 26 O 1.21588 * 120.00245 * 354.80049 * 24 23 22 27 27 C 1.38633 * 120.00450 * 359.48648 * 22 21 20 28 28 H 1.08994 * 109.47366 * 274.65555 * 1 2 3 29 29 H 1.08998 * 109.46721 * 34.65964 * 1 2 3 30 30 H 1.09000 * 109.46645 * 154.65587 * 1 2 3 31 31 H 0.97000 * 120.00139 * 179.97438 * 6 5 3 32 32 H 1.08992 * 109.47658 * 330.00562 * 11 2 1 33 33 H 1.09003 * 109.47073 * 210.00292 * 11 2 1 34 34 H 1.09000 * 109.46828 * 59.99917 * 12 11 2 35 35 H 1.08998 * 109.47109 * 299.99270 * 12 11 2 36 36 H 1.08994 * 109.47188 * 59.99687 * 13 12 11 37 37 H 1.09003 * 109.47235 * 299.99891 * 13 12 11 38 38 H 1.09006 * 109.46616 * 272.36161 * 15 14 13 39 39 H 1.08994 * 109.47466 * 32.36214 * 15 14 13 40 40 H 1.09004 * 109.47506 * 152.36623 * 15 14 13 41 41 H 1.08000 * 120.00560 * 0.02562 * 19 18 16 42 42 H 1.07991 * 119.89660 * 180.02562 * 20 19 18 43 43 H 1.08007 * 119.88423 * 180.27567 * 21 20 19 44 44 H 0.97001 * 119.99897 * 35.10658 * 23 22 21 45 45 H 0.96996 * 120.00129 * 179.97438 * 25 24 23 46 46 H 0.97003 * 120.00039 * 359.71811 * 25 24 23 47 47 H 1.07996 * 120.11158 * 180.23496 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1063 1.2572 -0.4963 5 6 1.6142 2.2965 0.6379 6 7 0.5108 2.1804 1.3459 7 14 2.4597 3.9557 0.4913 8 1 2.5192 4.3566 -0.9373 9 1 1.6940 4.9709 1.2584 10 1 3.8379 3.8589 1.0360 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4418 13 6 3.2182 -3.0356 -1.4412 14 7 3.4630 -3.4587 -2.8223 15 6 2.4868 -4.3050 -3.5130 16 6 4.5861 -3.0693 -3.4574 17 8 5.3498 -2.2914 -2.9196 18 6 4.8894 -3.5884 -4.8083 19 6 4.4770 -4.8709 -5.1747 20 6 4.7617 -5.3532 -6.4357 21 6 5.4506 -4.5682 -7.3417 22 6 5.8700 -3.2926 -6.9849 23 7 6.5715 -2.5038 -7.9043 24 6 7.5454 -1.6759 -7.4769 25 7 8.2909 -0.9951 -8.3697 26 8 7.7512 -1.5430 -6.2860 27 6 5.5889 -2.7988 -5.7204 28 1 -0.3634 0.0834 1.0242 29 1 -0.3633 0.8453 -0.5844 30 1 -0.3632 -0.9288 -0.4399 31 1 0.1369 2.9563 1.7920 32 1 1.6085 -2.0281 0.5146 33 1 3.1500 -1.1381 0.5144 34 1 3.0417 -0.9514 -1.9558 35 1 1.5003 -1.8415 -1.9556 36 1 2.6295 -3.7952 -0.9270 37 1 4.1706 -2.9047 -0.9275 38 1 2.7046 -5.3531 -3.3071 39 1 1.4840 -4.0661 -3.1593 40 1 2.5458 -4.1259 -4.5866 41 1 3.9351 -5.4856 -4.4711 42 1 4.4416 -6.3453 -6.7175 43 1 5.6667 -4.9494 -8.3289 44 1 6.3566 -2.5531 -8.8489 45 1 8.9916 -0.3989 -8.0622 46 1 8.1293 -1.1041 -9.3200 47 1 5.9108 -1.8061 -5.4425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570216708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:59 Heat of formation + Delta-G solvation = 1.821953 kcal Electronic energy + Delta-G solvation = -28351.561740 eV Core-core repulsion = 24342.905674 eV Total energy + Delta-G solvation = -4008.656066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.02733 -40.01539 -38.31360 -36.16187 -35.36304 -34.95018 -34.03908 -32.37966 -31.27840 -30.24714 -29.37479 -27.01652 -25.94178 -25.50060 -23.63265 -23.38454 -21.90103 -21.32539 -20.13131 -19.74892 -18.70974 -18.21292 -16.94786 -16.77771 -16.51970 -16.07342 -15.72736 -15.51173 -15.34131 -14.86093 -14.66742 -14.31262 -14.09083 -13.87448 -13.58986 -13.39221 -13.16167 -12.88390 -12.75338 -12.54357 -12.43941 -11.89357 -11.66561 -11.56539 -11.18505 -10.82481 -10.76529 -10.71806 -10.61134 -10.40262 -10.37515 -10.10406 -10.09295 -9.80279 -9.71641 -9.59880 -9.14004 -8.56951 -8.43452 -8.36954 -6.47654 -5.60463 -3.15931 0.71885 1.11404 2.33393 2.66849 2.95357 3.07611 3.48625 3.51434 3.55177 3.67115 3.97354 4.41432 4.60460 4.61110 4.79716 4.86445 5.11604 5.16156 5.22980 5.28186 5.42769 5.54149 5.56045 5.62352 5.63638 5.87312 5.90451 6.02139 6.08671 6.15611 6.17995 6.25857 6.29165 6.34977 6.46687 6.59706 6.69890 6.78075 6.85271 6.99435 7.17933 7.41538 7.43748 7.48552 7.83053 7.95596 8.16125 8.31325 8.59537 9.38427 9.99307 10.52954 11.43042 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011839 B = 0.002683 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.427335 B =10435.140812 C =12310.522985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.601 5.601 3 C -0.255 4.255 4 H 0.063 0.937 5 C 0.007 3.993 6 N -0.908 5.908 7 Si 0.903 3.097 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.155 3.845 12 C -0.151 4.151 13 C 0.118 3.882 14 N -0.610 5.610 15 C 0.073 3.927 16 C 0.552 3.448 17 O -0.519 6.519 18 C -0.107 4.107 19 C -0.112 4.112 20 C -0.110 4.110 21 C -0.127 4.127 22 C 0.152 3.848 23 N -0.686 5.686 24 C 0.700 3.300 25 N -0.862 5.862 26 O -0.563 6.563 27 C -0.064 4.064 28 H 0.033 0.967 29 H 0.033 0.967 30 H -0.004 1.004 31 H 0.252 0.748 32 H 0.033 0.967 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.407 0.593 45 H 0.419 0.581 46 H 0.397 0.603 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.552 -18.550 -24.308 31.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.324 5.324 3 C -0.385 4.385 4 H 0.081 0.919 5 C -0.192 4.192 6 N -0.553 5.553 7 Si 0.733 3.267 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.207 1.207 11 C 0.028 3.972 12 C -0.192 4.192 13 C -0.004 4.004 14 N -0.343 5.343 15 C -0.070 4.070 16 C 0.339 3.661 17 O -0.394 6.394 18 C -0.111 4.111 19 C -0.131 4.131 20 C -0.129 4.129 21 C -0.148 4.148 22 C 0.057 3.943 23 N -0.335 5.335 24 C 0.399 3.601 25 N -0.430 5.430 26 O -0.438 6.438 27 C -0.085 4.085 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.015 0.985 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.243 0.757 45 H 0.252 0.748 46 H 0.225 0.775 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.945 -17.931 -22.860 30.399 hybrid contribution 0.425 1.114 -1.096 1.619 sum 9.370 -16.817 -23.956 30.732 Atomic orbital electron populations 1.20788 0.83211 0.95113 0.99274 1.43774 1.01528 1.00741 1.86379 1.19116 1.03779 0.87737 1.27852 0.91883 1.25248 0.97891 0.99057 0.96992 1.69999 1.21603 1.29014 1.34651 0.86359 0.79073 0.83690 0.77567 1.21029 1.21661 1.20741 1.20651 0.96128 0.88356 0.92114 1.22601 0.99141 0.95485 1.01989 1.21610 1.01436 0.97050 0.80326 1.47802 1.20210 1.51284 1.15016 1.22144 0.92999 0.93762 0.98121 1.18330 0.81371 0.81059 0.85292 1.90849 1.48390 1.33271 1.66936 1.19871 1.01083 0.95558 0.94571 1.21754 0.99190 0.95138 0.97044 1.20854 0.99067 0.99714 0.93228 1.21001 1.01241 0.91797 1.00790 1.17327 0.96167 0.90332 0.90469 1.42476 1.36891 1.43784 1.10316 1.16011 0.79409 0.79069 0.85616 1.42955 1.40381 1.50562 1.09138 1.91096 1.71230 1.67325 1.14143 1.21433 0.94047 1.01451 0.91600 0.94912 0.94803 0.98525 0.93792 0.94869 0.93368 0.91719 0.93000 0.90804 0.90010 0.92478 0.90876 0.90459 0.84293 0.85010 0.85469 0.75728 0.74760 0.77479 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.17 9.01 59.85 0.54 4.70 16 2 N -0.60 -16.27 2.90 -181.12 -0.52 -16.79 16 3 C -0.25 -7.57 9.57 -15.06 -0.14 -7.71 16 4 H 0.06 1.88 7.84 -52.48 -0.41 1.47 16 5 C 0.01 0.20 5.24 -17.43 -0.09 0.10 16 6 N -0.91 -27.79 10.93 55.49 0.61 -27.19 16 7 Si 0.90 23.24 29.56 -169.99 -5.02 18.21 16 8 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 9 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 10 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 11 C 0.16 3.44 5.65 -4.04 -0.02 3.42 16 12 C -0.15 -2.92 5.86 -26.73 -0.16 -3.08 16 13 C 0.12 1.84 5.38 -4.04 -0.02 1.82 16 14 N -0.61 -8.70 2.87 -182.68 -0.52 -9.23 16 15 C 0.07 0.70 8.78 59.85 0.53 1.22 16 16 C 0.55 9.27 7.41 -12.32 -0.09 9.18 16 17 O -0.52 -11.19 16.38 5.32 0.09 -11.11 16 18 C -0.11 -1.46 5.28 -104.99 -0.55 -2.01 16 19 C -0.11 -1.07 7.59 -39.16 -0.30 -1.37 16 20 C -0.11 -0.81 10.02 -39.67 -0.40 -1.21 16 21 C -0.13 -0.96 9.96 -39.31 -0.39 -1.35 16 22 C 0.15 1.58 6.29 -83.73 -0.53 1.05 16 23 N -0.69 -5.39 5.34 -14.25 -0.08 -5.47 16 24 C 0.70 7.24 8.68 -86.92 -0.75 6.49 16 25 N -0.86 -4.60 8.88 27.64 0.25 -4.35 16 26 O -0.56 -9.10 14.61 5.29 0.08 -9.03 16 27 C -0.06 -0.92 8.25 -38.98 -0.32 -1.24 16 28 H 0.03 0.91 7.21 -51.93 -0.37 0.53 16 29 H 0.03 0.92 7.73 -51.93 -0.40 0.52 16 30 H 0.00 -0.09 8.04 -51.93 -0.42 -0.50 16 31 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.03 0.66 8.07 -51.93 -0.42 0.25 16 33 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 34 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.94 8.07 -51.93 -0.42 0.53 16 37 H 0.08 1.40 7.50 -51.93 -0.39 1.01 16 38 H 0.06 0.40 6.86 -51.93 -0.36 0.04 16 39 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 40 H 0.08 0.68 5.75 -51.93 -0.30 0.38 16 41 H 0.14 1.05 5.04 -52.49 -0.26 0.79 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 43 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 44 H 0.41 1.45 8.84 -40.82 -0.36 1.09 16 45 H 0.42 2.06 8.93 -40.82 -0.36 1.70 16 46 H 0.40 0.60 8.85 -40.82 -0.36 0.24 16 47 H 0.15 2.67 6.11 -52.49 -0.32 2.35 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -40.54 387.44 -8.82 -49.36 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.82 Total: -0.27 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -2.71 Total: 10.02 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -0.27 Total: -63.03 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.16 Total: -20.13 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.21 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -40.54 -8.82 -49.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570216708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.183 kcal (2) G-P(sol) polarization free energy of solvation -40.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds