Wall clock time and date at job start Tue Mar 31 2020 18:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28386 * 119.10325 * 2 1 4 4 C 1.31400 * 122.26848 * 180.02562 * 3 2 1 5 5 C 1.47886 * 119.89502 * 179.97438 * 4 3 2 6 6 O 1.21552 * 120.00216 * 179.72670 * 5 4 3 7 7 N 1.34777 * 119.99831 * 359.97438 * 5 4 3 8 8 C 1.46506 * 120.00268 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.46730 * 34.99670 * 8 7 5 10 10 C 1.53006 * 109.46652 * 275.00452 * 8 7 5 11 11 C 1.52999 * 109.46994 * 299.99419 * 10 8 7 12 12 C 1.53003 * 109.47299 * 300.00278 * 11 10 8 13 13 C 1.52999 * 109.46786 * 60.00189 * 12 11 10 14 14 C 1.52991 * 109.47282 * 155.00081 * 8 7 5 15 15 H 1.09002 * 109.46896 * 180.02562 * 14 8 7 16 16 C 1.52996 * 109.47547 * 299.99938 * 14 8 7 17 17 N 1.46496 * 109.47450 * 185.00017 * 16 14 8 18 18 C 1.36939 * 119.99941 * 179.97438 * 17 16 14 19 19 H 1.07992 * 119.99899 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99763 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00227 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00034 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47179 * 90.00119 * 22 20 18 24 24 H 1.48501 * 109.47147 * 210.00487 * 22 20 18 25 25 H 1.48497 * 109.46782 * 330.00077 * 22 20 18 26 26 C 1.41574 * 120.21510 * 0.25424 * 4 3 2 27 27 C 1.36329 * 118.23481 * 359.49056 * 26 4 3 28 28 C 1.34613 * 119.09867 * 180.02562 * 2 1 3 29 29 O 1.21976 * 120.22869 * 359.96078 * 28 2 1 30 30 H 1.09004 * 109.47144 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.47056 * 120.00014 * 1 2 3 32 32 H 1.08998 * 109.47196 * 240.00184 * 1 2 3 33 33 H 0.96999 * 120.00043 * 0.02562 * 7 5 4 34 34 H 1.08999 * 109.47244 * 60.00092 * 10 8 7 35 35 H 1.09002 * 109.46826 * 179.97438 * 10 8 7 36 36 H 1.09002 * 109.47159 * 60.00418 * 11 10 8 37 37 H 1.08997 * 109.46706 * 180.02562 * 11 10 8 38 38 H 1.09002 * 109.47024 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.47129 * 300.00158 * 12 11 10 40 40 H 1.09002 * 109.47312 * 60.00081 * 13 12 11 41 41 H 1.09006 * 109.46903 * 180.02562 * 13 12 11 42 42 H 1.09005 * 109.46998 * 305.00463 * 16 14 8 43 43 H 1.09005 * 109.47141 * 64.99992 * 16 14 8 44 44 H 0.97001 * 119.99915 * 359.97438 * 17 16 14 45 45 H 0.97000 * 120.00048 * 180.02562 * 21 20 18 46 46 H 1.08001 * 120.88357 * 179.74626 * 26 4 3 47 47 H 1.08000 * 121.03365 * 180.21662 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0894 1.1218 0.0000 4 6 3.4014 1.1943 -0.0005 5 6 4.0666 2.5151 -0.0010 6 8 5.2801 2.5845 0.0035 7 7 3.3272 3.6420 -0.0016 8 6 3.9860 4.9505 -0.0027 9 1 4.9011 4.8960 -0.5923 10 6 4.3282 5.3503 1.4340 11 6 3.0438 5.4268 2.2618 12 6 2.1053 6.4700 1.6518 13 6 1.7631 6.0700 0.2152 14 6 3.0476 5.9935 -0.6126 15 1 3.5380 6.9670 -0.6138 16 6 2.7054 5.5937 -2.0492 17 7 1.9048 6.6503 -2.6727 18 6 1.4789 6.5132 -3.9669 19 1 1.7329 5.6260 -4.5278 20 6 0.7199 7.5142 -4.5575 21 7 0.4099 8.5953 -3.8738 22 14 0.1383 7.3269 -6.3228 23 1 -1.1865 6.6561 -6.3390 24 1 0.0219 8.6677 -6.9505 25 1 1.1171 6.5081 -7.0821 26 6 4.1803 0.0121 -0.0065 27 6 3.5323 -1.1873 -0.0010 28 6 2.1196 -1.1762 -0.0005 29 8 1.4974 -2.2253 -0.0003 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 -0.3633 -0.5138 0.8900 33 1 2.3588 3.5866 -0.0012 34 1 4.9969 4.6072 1.8685 35 1 4.8188 6.3237 1.4332 36 1 2.5535 4.4533 2.2626 37 1 3.2876 5.7121 3.2851 38 1 1.1900 6.5241 2.2413 39 1 2.5955 7.4435 1.6511 40 1 1.2728 5.0965 0.2160 41 1 1.0948 6.8134 -0.2195 42 1 3.6257 5.4527 -2.6161 43 1 2.1370 4.6636 -2.0419 44 1 1.6764 7.4471 -2.1688 45 1 -0.1208 9.2946 -4.2864 46 1 5.2593 0.0592 -0.0111 47 1 4.0818 -2.1170 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754350521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:05 Heat of formation + Delta-G solvation = -3.818102 kcal Electronic energy + Delta-G solvation = -29467.367006 eV Core-core repulsion = 25458.466369 eV Total energy + Delta-G solvation = -4008.900637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.43352 -40.35807 -38.50224 -37.85253 -35.21549 -34.67843 -33.83586 -32.04368 -31.81284 -29.95677 -29.50659 -28.54670 -25.72859 -25.15527 -24.04952 -23.04531 -22.45097 -21.70893 -20.63109 -19.21502 -18.90073 -18.33295 -17.21892 -17.14475 -16.95608 -16.29570 -15.73750 -15.41841 -14.97374 -14.78054 -14.51362 -14.11790 -14.06391 -13.71833 -13.70183 -13.63246 -13.30819 -13.09761 -12.99536 -12.87957 -12.73789 -12.13712 -12.07528 -11.90828 -11.70894 -11.44310 -10.91936 -10.90396 -10.81244 -10.74813 -10.46279 -10.32942 -10.22641 -10.08051 -10.00436 -9.89166 -9.64843 -9.08459 -8.90211 -8.84073 -6.93273 -5.78623 -3.06775 0.08899 0.81958 1.75388 2.56118 2.93492 3.26784 3.41827 3.47654 3.48985 3.61006 4.28135 4.41147 4.50903 4.56683 4.80796 4.85669 4.86333 4.87354 4.90096 5.19391 5.21816 5.22388 5.29596 5.30677 5.49039 5.55098 5.58124 5.60338 5.63875 5.66406 5.72433 5.79860 6.01275 6.10815 6.13285 6.21917 6.24374 6.34204 6.45511 6.50028 6.66034 6.78334 6.84869 7.13871 7.38232 7.63031 7.68708 8.03637 8.40611 9.52046 10.09635 10.44408 11.44221 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009664 B = 0.003495 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.535463 B = 8008.880005 C = 9652.375919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.335 5.335 3 N -0.178 5.178 4 C 0.019 3.981 5 C 0.588 3.412 6 O -0.530 6.530 7 N -0.693 5.693 8 C 0.153 3.847 9 H 0.092 0.908 10 C -0.128 4.128 11 C -0.117 4.117 12 C -0.121 4.121 13 C -0.111 4.111 14 C -0.102 4.102 15 H 0.088 0.912 16 C 0.159 3.841 17 N -0.730 5.730 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.030 4.030 27 C -0.194 4.194 28 C 0.479 3.521 29 O -0.526 6.526 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.409 0.591 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.164 0.836 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.958 -13.776 14.607 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.157 5.157 3 N -0.009 5.009 4 C -0.152 4.152 5 C 0.370 3.630 6 O -0.405 6.405 7 N -0.345 5.345 8 C 0.049 3.951 9 H 0.110 0.890 10 C -0.167 4.167 11 C -0.154 4.154 12 C -0.158 4.158 13 C -0.149 4.149 14 C -0.121 4.121 15 H 0.106 0.894 16 C 0.031 3.969 17 N -0.375 5.375 18 C -0.369 4.369 19 H 0.086 0.914 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.053 4.053 27 C -0.223 4.223 28 C 0.278 3.722 29 O -0.404 6.404 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.247 0.753 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.182 0.818 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.639 -13.881 14.431 20.554 hybrid contribution -0.371 -0.425 -0.931 1.089 sum 4.268 -14.305 13.500 20.127 Atomic orbital electron populations 1.22297 0.73181 1.05823 1.04818 1.46784 1.10033 1.02557 1.56351 1.71110 1.11300 1.12660 1.05852 1.21845 0.88129 0.96501 1.08745 1.17172 0.86384 0.82260 0.77161 1.90815 1.12584 1.86355 1.50777 1.46003 1.11043 1.05163 1.72325 1.21085 0.96567 0.81003 0.96476 0.88988 1.21912 0.97730 1.01995 0.95046 1.21504 0.96019 0.99432 0.98476 1.21588 0.98990 0.98825 0.96426 1.21544 0.97341 1.01980 0.94030 1.21639 0.95842 0.98537 0.96095 0.89398 1.20653 0.94303 0.92309 0.89594 1.42353 1.62322 1.20103 1.12710 1.19210 1.26187 1.02404 0.89148 0.91351 1.24707 1.01138 0.96747 0.98266 1.69649 1.43309 1.08806 1.36453 0.86219 0.78619 0.76747 0.84798 1.21774 1.21759 1.20806 1.22246 1.03135 0.90279 0.89639 1.22686 0.92632 1.00479 1.06524 1.18112 0.90151 0.83896 0.80063 1.90981 1.69333 1.29374 1.50696 0.87551 0.89067 0.89203 0.75305 0.91599 0.90755 0.92305 0.92419 0.92258 0.91840 0.92624 0.90192 0.96407 0.96404 0.78193 0.93538 0.81807 0.81370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.20 59.85 0.61 1.20 16 2 N -0.34 -3.48 3.62 -70.15 -0.25 -3.74 16 3 N -0.18 -1.90 10.05 33.41 0.34 -1.57 16 4 C 0.02 0.21 6.84 -82.83 -0.57 -0.36 16 5 C 0.59 7.31 7.77 -12.31 -0.10 7.22 16 6 O -0.53 -7.72 16.05 5.32 0.09 -7.64 16 7 N -0.69 -8.29 3.60 -54.74 -0.20 -8.49 16 8 C 0.15 1.92 2.23 -67.93 -0.15 1.77 16 9 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 10 C -0.13 -1.39 5.60 -26.73 -0.15 -1.54 16 11 C -0.12 -1.17 5.77 -26.73 -0.15 -1.33 16 12 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 13 C -0.11 -1.51 4.90 -26.73 -0.13 -1.64 16 14 C -0.10 -1.48 2.02 -90.62 -0.18 -1.66 16 15 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 16 C 0.16 3.02 5.42 -4.05 -0.02 2.99 16 17 N -0.73 -17.65 5.33 -59.91 -0.32 -17.97 16 18 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 22 Si 0.90 22.17 29.55 -169.99 -5.02 17.14 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C -0.03 -0.27 9.67 -39.00 -0.38 -0.65 16 27 C -0.19 -1.78 10.11 -39.12 -0.40 -2.18 16 28 C 0.48 5.54 7.47 -15.18 -0.11 5.42 16 29 O -0.53 -7.45 17.07 4.94 0.08 -7.37 16 30 H 0.11 0.65 8.05 -51.93 -0.42 0.23 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.41 4.71 6.00 -40.82 -0.25 4.47 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.59 7.60 -51.93 -0.39 0.20 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.72 6.51 -51.93 -0.34 0.38 16 41 H 0.08 1.31 7.18 -51.93 -0.37 0.94 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.34 7.61 -51.93 -0.40 -0.05 16 44 H 0.38 9.68 6.85 -40.82 -0.28 9.40 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.16 1.24 7.72 -52.49 -0.41 0.83 16 47 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 381.64 15.07 5.75 5.75 Total: -1.00 -33.10 381.64 -7.96 -41.06 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.02 Total: 9.04 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -2.13 Total: 0.63 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.29 Total: -58.62 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.17 Total: -15.00 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.10 -7.96 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754350521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.244 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds