Wall clock time and date at job start Tue Mar 31 2020 18:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28386 * 119.10325 * 2 1 4 4 C 1.31400 * 122.26848 * 180.02562 * 3 2 1 5 5 C 1.47886 * 119.89502 * 179.97438 * 4 3 2 6 6 O 1.21552 * 120.00216 * 179.72670 * 5 4 3 7 7 N 1.34777 * 119.99831 * 359.97438 * 5 4 3 8 8 C 1.46506 * 120.00268 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.46730 * 34.99670 * 8 7 5 10 10 C 1.53006 * 109.46652 * 275.00452 * 8 7 5 11 11 C 1.52999 * 109.46994 * 299.99419 * 10 8 7 12 12 C 1.53003 * 109.47299 * 300.00278 * 11 10 8 13 13 C 1.52999 * 109.46786 * 60.00189 * 12 11 10 14 14 C 1.52991 * 109.47282 * 155.00081 * 8 7 5 15 15 H 1.09002 * 109.46896 * 180.02562 * 14 8 7 16 16 C 1.52996 * 109.47547 * 299.99938 * 14 8 7 17 17 N 1.46496 * 109.47450 * 185.00017 * 16 14 8 18 18 C 1.36939 * 119.99941 * 179.97438 * 17 16 14 19 19 H 1.07992 * 119.99899 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99763 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00227 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00034 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47179 * 90.00119 * 22 20 18 24 24 H 1.48501 * 109.47147 * 210.00487 * 22 20 18 25 25 H 1.48497 * 109.46782 * 330.00077 * 22 20 18 26 26 C 1.41574 * 120.21510 * 0.25424 * 4 3 2 27 27 C 1.36329 * 118.23481 * 359.49056 * 26 4 3 28 28 C 1.34613 * 119.09867 * 180.02562 * 2 1 3 29 29 O 1.21976 * 120.22869 * 359.96078 * 28 2 1 30 30 H 1.09004 * 109.47144 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.47056 * 120.00014 * 1 2 3 32 32 H 1.08998 * 109.47196 * 240.00184 * 1 2 3 33 33 H 0.96999 * 120.00043 * 0.02562 * 7 5 4 34 34 H 1.08999 * 109.47244 * 60.00092 * 10 8 7 35 35 H 1.09002 * 109.46826 * 179.97438 * 10 8 7 36 36 H 1.09002 * 109.47159 * 60.00418 * 11 10 8 37 37 H 1.08997 * 109.46706 * 180.02562 * 11 10 8 38 38 H 1.09002 * 109.47024 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.47129 * 300.00158 * 12 11 10 40 40 H 1.09002 * 109.47312 * 60.00081 * 13 12 11 41 41 H 1.09006 * 109.46903 * 180.02562 * 13 12 11 42 42 H 1.09005 * 109.46998 * 305.00463 * 16 14 8 43 43 H 1.09005 * 109.47141 * 64.99992 * 16 14 8 44 44 H 0.97001 * 119.99915 * 359.97438 * 17 16 14 45 45 H 0.97000 * 120.00048 * 180.02562 * 21 20 18 46 46 H 1.08001 * 120.88357 * 179.74626 * 26 4 3 47 47 H 1.08000 * 121.03365 * 180.21662 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0894 1.1218 0.0000 4 6 3.4014 1.1943 -0.0005 5 6 4.0666 2.5151 -0.0010 6 8 5.2801 2.5845 0.0035 7 7 3.3272 3.6420 -0.0016 8 6 3.9860 4.9505 -0.0027 9 1 4.9011 4.8960 -0.5923 10 6 4.3282 5.3503 1.4340 11 6 3.0438 5.4268 2.2618 12 6 2.1053 6.4700 1.6518 13 6 1.7631 6.0700 0.2152 14 6 3.0476 5.9935 -0.6126 15 1 3.5380 6.9670 -0.6138 16 6 2.7054 5.5937 -2.0492 17 7 1.9048 6.6503 -2.6727 18 6 1.4789 6.5132 -3.9669 19 1 1.7329 5.6260 -4.5278 20 6 0.7199 7.5142 -4.5575 21 7 0.4099 8.5953 -3.8738 22 14 0.1383 7.3269 -6.3228 23 1 -1.1865 6.6561 -6.3390 24 1 0.0219 8.6677 -6.9505 25 1 1.1171 6.5081 -7.0821 26 6 4.1803 0.0121 -0.0065 27 6 3.5323 -1.1873 -0.0010 28 6 2.1196 -1.1762 -0.0005 29 8 1.4974 -2.2253 -0.0003 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 -0.3633 -0.5138 0.8900 33 1 2.3588 3.5866 -0.0012 34 1 4.9969 4.6072 1.8685 35 1 4.8188 6.3237 1.4332 36 1 2.5535 4.4533 2.2626 37 1 3.2876 5.7121 3.2851 38 1 1.1900 6.5241 2.2413 39 1 2.5955 7.4435 1.6511 40 1 1.2728 5.0965 0.2160 41 1 1.0948 6.8134 -0.2195 42 1 3.6257 5.4527 -2.6161 43 1 2.1370 4.6636 -2.0419 44 1 1.6764 7.4471 -2.1688 45 1 -0.1208 9.2946 -4.2864 46 1 5.2593 0.0592 -0.0111 47 1 4.0818 -2.1170 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754350521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:04 Heat of formation + Delta-G solvation = -25.698330 kcal Electronic energy + Delta-G solvation = -29468.315804 eV Core-core repulsion = 25458.466369 eV Total energy + Delta-G solvation = -4009.849435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.26435 -41.39453 -39.53391 -38.81903 -36.44956 -35.97402 -34.82582 -33.69826 -32.75452 -31.21134 -30.79971 -29.33123 -27.01315 -26.36574 -24.83703 -24.66035 -23.53424 -22.67423 -21.92151 -20.22743 -19.86850 -19.30332 -18.95142 -17.96640 -17.91391 -17.15860 -16.84668 -16.63859 -16.30009 -16.07473 -15.60621 -15.31791 -15.11004 -14.94511 -14.82128 -14.62204 -14.50817 -14.48168 -14.01287 -13.68208 -13.56498 -13.38638 -13.10221 -12.95411 -12.87150 -12.80240 -12.69663 -12.57081 -12.10230 -11.90341 -11.82609 -11.54221 -11.45716 -11.33029 -11.16393 -11.02115 -10.96028 -10.82414 -10.08168 -9.74145 -8.96484 -7.94108 -5.21656 -0.69443 -0.04623 0.98368 1.47529 1.48179 1.56664 1.64477 1.98488 2.39742 2.56206 2.77847 3.39557 3.52469 3.57564 3.66044 3.72615 3.82767 3.88653 4.12681 4.27427 4.28074 4.29629 4.45973 4.48309 4.51644 4.52076 4.54973 4.62226 4.65927 4.70243 4.78087 4.81190 4.91608 4.96402 5.05563 5.12750 5.21828 5.30778 5.35271 5.36873 5.47124 5.49497 5.56217 5.62673 6.27299 6.28806 6.41901 6.77764 7.05014 7.35831 8.12009 8.36144 9.29123 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009664 B = 0.003495 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.535463 B = 8008.880005 C = 9652.375919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.334 5.334 3 N -0.180 5.180 4 C 0.012 3.988 5 C 0.590 3.410 6 O -0.552 6.552 7 N -0.691 5.691 8 C 0.160 3.840 9 H 0.080 0.920 10 C -0.122 4.122 11 C -0.110 4.110 12 C -0.114 4.114 13 C -0.106 4.106 14 C -0.089 4.089 15 H 0.082 0.918 16 C 0.160 3.840 17 N -0.740 5.740 18 C -0.244 4.244 19 H 0.069 0.931 20 C -0.070 4.070 21 N -0.966 5.966 22 Si 0.967 3.033 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.274 1.274 26 C -0.024 4.024 27 C -0.188 4.188 28 C 0.468 3.532 29 O -0.559 6.559 30 H 0.120 0.880 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.412 0.588 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.007 0.993 43 H 0.021 0.979 44 H 0.377 0.623 45 H 0.251 0.749 46 H 0.182 0.818 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.367 -14.701 15.494 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.155 5.155 3 N -0.012 5.012 4 C -0.159 4.159 5 C 0.374 3.626 6 O -0.428 6.428 7 N -0.342 5.342 8 C 0.055 3.945 9 H 0.098 0.902 10 C -0.161 4.161 11 C -0.147 4.147 12 C -0.152 4.152 13 C -0.144 4.144 14 C -0.108 4.108 15 H 0.101 0.899 16 C 0.034 3.966 17 N -0.383 5.383 18 C -0.376 4.376 19 H 0.087 0.913 20 C -0.262 4.262 21 N -0.616 5.616 22 Si 0.797 3.203 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.199 1.199 26 C -0.048 4.048 27 C -0.218 4.218 28 C 0.269 3.731 29 O -0.440 6.440 30 H 0.139 0.861 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.250 0.750 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.025 0.975 43 H 0.039 0.961 44 H 0.209 0.791 45 H 0.060 0.940 46 H 0.200 0.800 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 5.059 -14.818 15.328 21.912 hybrid contribution -0.490 -0.147 -1.208 1.312 sum 4.569 -14.965 14.121 21.077 Atomic orbital electron populations 1.22545 0.71807 1.07005 1.05502 1.46977 1.10973 1.02234 1.55362 1.71113 1.11347 1.12705 1.06008 1.21771 0.88516 0.96354 1.09233 1.17295 0.86109 0.82676 0.76556 1.90804 1.13480 1.86731 1.51816 1.45969 1.11148 1.04985 1.72142 1.20950 0.95291 0.80658 0.97561 0.90214 1.21867 0.98300 1.02400 0.93488 1.21462 0.95085 0.99122 0.99077 1.21533 0.99864 0.99180 0.94584 1.21460 0.96053 1.01412 0.95436 1.21474 0.96853 0.98908 0.93586 0.89927 1.20765 0.92874 0.91087 0.91902 1.42518 1.62741 1.20996 1.12015 1.19562 1.25456 1.02151 0.90452 0.91272 1.25453 1.01987 0.96741 1.02038 1.69791 1.44372 1.09535 1.37938 0.85234 0.78224 0.76423 0.80449 1.21344 1.22135 1.19886 1.22372 1.03867 0.89442 0.89073 1.22889 0.91620 1.01500 1.05752 1.18504 0.91057 0.83721 0.79819 1.90964 1.70085 1.30357 1.52600 0.86112 0.88858 0.88111 0.74972 0.91457 0.89949 0.92065 0.90601 0.91161 0.91804 0.91955 0.93331 0.97474 0.96109 0.79068 0.93991 0.80042 0.79069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 10.20 127.77 1.30 2.29 16 2 N -0.33 -6.54 3.62 -494.05 -1.79 -8.33 16 3 N -0.18 -3.61 10.05 -48.20 -0.48 -4.09 16 4 C 0.01 0.24 6.84 42.59 0.29 0.53 16 5 C 0.59 13.90 7.77 86.80 0.67 14.58 16 6 O -0.55 -15.36 16.05 -3.88 -0.06 -15.42 16 7 N -0.69 -15.66 3.60 -445.36 -1.61 -17.27 16 8 C 0.16 3.84 2.23 44.99 0.10 3.94 16 9 H 0.08 2.15 7.58 -2.39 -0.02 2.13 16 10 C -0.12 -2.38 5.60 30.60 0.17 -2.21 16 11 C -0.11 -1.91 5.77 30.60 0.18 -1.74 16 12 C -0.11 -2.31 5.92 30.59 0.18 -2.13 16 13 C -0.11 -2.80 4.90 30.60 0.15 -2.65 16 14 C -0.09 -2.55 2.02 -10.80 -0.02 -2.57 16 15 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 16 C 0.16 6.10 5.42 86.38 0.47 6.57 16 17 N -0.74 -36.24 5.33 -343.46 -1.83 -38.07 16 18 C -0.24 -13.46 9.99 84.03 0.84 -12.62 16 19 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 20 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 21 N -0.97 -57.83 13.06 21.65 0.28 -57.55 16 22 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 26 C -0.02 -0.40 9.67 22.65 0.22 -0.18 16 27 C -0.19 -3.13 10.11 22.57 0.23 -2.91 16 28 C 0.47 10.33 7.47 85.01 0.64 10.96 16 29 O -0.56 -15.52 17.07 -5.24 -0.09 -15.61 16 30 H 0.12 1.30 8.05 -2.38 -0.02 1.28 16 31 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.41 8.94 6.00 -92.71 -0.56 8.39 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.06 7.60 -2.39 -0.02 1.04 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.06 1.54 6.51 -2.39 -0.02 1.53 16 41 H 0.05 1.61 7.18 -2.38 -0.02 1.59 16 42 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 43 H 0.02 0.79 7.61 -2.38 -0.02 0.77 16 44 H 0.38 19.43 6.85 -92.71 -0.63 18.79 16 45 H 0.25 14.62 8.31 -92.71 -0.77 13.84 16 46 H 0.18 2.33 7.72 -2.91 -0.02 2.30 16 47 H 0.19 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -70.70 381.64 2.14 -68.56 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: -0.19 Total: 31.67 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.88 Total: 8.40 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -5.43 Total: -125.31 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.15 Total: -31.03 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -70.70 2.14 -68.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754350521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.863 kcal (2) G-P(sol) polarization free energy of solvation -70.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds