Wall clock time and date at job start Tue Mar 31 2020 18:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99627 * 2 1 4 4 C 1.53005 * 109.46963 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47042 * 65.00061 * 4 3 2 6 6 C 1.46507 * 119.99926 * 263.11961 * 5 4 3 7 7 C 1.50698 * 109.46855 * 274.03494 * 6 5 4 8 8 H 1.08002 * 119.99957 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99893 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00349 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99894 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47140 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47064 * 119.99700 * 11 9 7 14 14 H 1.48494 * 109.46926 * 239.99646 * 11 9 7 15 15 C 1.34778 * 120.00261 * 83.11729 * 5 4 3 16 16 O 1.21515 * 120.00173 * 181.45311 * 15 5 4 17 17 C 1.48123 * 119.99591 * 1.45133 * 15 5 4 18 18 C 1.39248 * 120.04375 * 173.44506 * 17 15 5 19 19 N 1.32196 * 120.06413 * 180.02562 * 18 17 15 20 20 C 1.31928 * 120.16876 * 0.02562 * 19 18 17 21 21 C 1.39667 * 120.09228 * 0.02562 * 20 19 18 22 22 N 1.38968 * 120.03338 * 180.02562 * 21 20 19 23 23 C 1.47852 * 111.00066 * 296.52868 * 22 21 20 24 24 C 1.54904 * 104.79672 * 146.36467 * 23 22 21 25 25 C 1.55141 * 101.65181 * 322.93086 * 24 23 22 26 26 C 1.47449 * 111.00588 * 57.37198 * 22 21 20 27 27 N 1.32341 * 119.93361 * 0.26669 * 21 20 19 28 28 H 1.09006 * 109.46763 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47247 * 299.99986 * 1 2 3 30 30 H 1.08998 * 109.47102 * 60.00406 * 1 2 3 31 31 H 1.08995 * 109.47149 * 60.00010 * 3 2 1 32 32 H 1.09004 * 109.47055 * 299.99412 * 3 2 1 33 33 H 1.09000 * 109.47371 * 305.00352 * 4 3 2 34 34 H 1.08998 * 109.46943 * 184.99437 * 4 3 2 35 35 H 1.08995 * 109.47108 * 34.03334 * 6 5 4 36 36 H 1.08992 * 109.46908 * 154.03424 * 6 5 4 37 37 H 0.96992 * 120.00612 * 180.02562 * 10 9 7 38 38 H 1.07996 * 119.97139 * 0.02562 * 18 17 15 39 39 H 1.08000 * 119.95802 * 180.02562 * 20 19 18 40 40 H 1.09001 * 110.36971 * 27.53458 * 23 22 21 41 41 H 1.08999 * 110.36912 * 265.19426 * 23 22 21 42 42 H 1.09000 * 110.98710 * 204.83859 * 24 23 22 43 43 H 1.09005 * 110.99125 * 81.02226 * 24 23 22 44 44 H 1.09006 * 110.70351 * 154.03725 * 25 24 23 45 45 H 1.08993 * 110.70796 * 277.26704 * 25 24 23 46 46 H 1.08998 * 109.88951 * 117.33199 * 26 22 21 47 47 H 1.09001 * 109.88093 * 356.14698 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.2515 -0.8742 -1.2982 7 6 5.6719 -1.1287 -0.8638 8 1 6.3063 -0.3018 -0.5805 9 6 6.1616 -2.4171 -0.8282 10 7 5.3890 -3.4240 -1.1727 11 14 7.9221 -2.7326 -0.2890 12 1 8.5764 -1.4420 0.0447 13 1 7.9233 -3.6126 0.9071 14 1 8.6662 -3.3939 -1.3909 15 6 4.1298 1.3161 -2.3588 16 8 4.4702 0.7970 -3.4034 17 6 3.8829 2.7756 -2.3031 18 6 4.1710 3.5741 -3.4069 19 7 3.9513 4.8767 -3.3574 20 6 3.4592 5.4250 -2.2630 21 6 3.1688 4.6307 -1.1515 22 7 2.6500 5.2094 0.0005 23 6 3.6126 6.1614 0.5949 24 6 2.7343 7.2770 1.2143 25 6 1.5892 7.3884 0.1735 26 6 1.3957 5.9287 -0.2881 27 7 3.3927 3.3270 -1.1948 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8508 0.5686 0.8426 34 1 3.9784 2.1766 0.0901 35 1 3.5679 -1.3969 -0.6293 36 1 4.1123 -1.2374 -2.3164 37 1 5.7333 -4.3304 -1.1473 38 1 4.5743 3.1288 -4.3043 39 1 3.2807 6.4895 -2.2264 40 1 4.2629 6.5745 -0.1761 41 1 4.2035 5.6704 1.3681 42 1 3.2873 8.2134 1.2881 43 1 2.3489 6.9751 2.1882 44 1 0.6803 7.7688 0.6398 45 1 1.8883 8.0206 -0.6624 46 1 0.5718 5.4723 0.2605 47 1 1.1911 5.9023 -1.3584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601035310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:08 Heat of formation + Delta-G solvation = 12.193329 kcal Electronic energy + Delta-G solvation = -30054.024097 eV Core-core repulsion = 26045.817767 eV Total energy + Delta-G solvation = -4008.206330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.66638 -39.46859 -38.47295 -37.33564 -35.16901 -34.30976 -33.01201 -32.38763 -29.61902 -29.42266 -29.39701 -27.35013 -25.94557 -25.18991 -24.19688 -22.87153 -22.52291 -21.60473 -21.39294 -19.25605 -18.09034 -17.37618 -16.95931 -16.43866 -16.27926 -16.16641 -15.94577 -15.35662 -15.16576 -14.95244 -14.51007 -14.18008 -14.08879 -13.86788 -13.67914 -13.35706 -13.13470 -12.98258 -12.56789 -12.35159 -12.19570 -11.81131 -11.75197 -11.64580 -11.54567 -11.33115 -11.17233 -11.14145 -11.11790 -10.82165 -10.66852 -10.29492 -10.11517 -9.92822 -9.52816 -9.32528 -9.26388 -9.19323 -8.40101 -8.35231 -7.60494 -5.96462 -4.01228 0.33202 0.88925 2.97460 3.02932 3.34699 3.41602 3.45490 3.68761 3.89572 4.01897 4.11187 4.24432 4.27403 4.28593 4.39401 4.50202 4.59846 4.82561 4.95100 4.99526 5.02164 5.10434 5.23669 5.34623 5.37954 5.42204 5.48568 5.49537 5.56256 5.60249 5.75992 5.76702 5.81329 5.91618 5.94789 6.01233 6.23548 6.33351 6.46309 6.71438 7.17055 7.20339 7.50294 7.57510 7.63083 7.64360 8.00052 8.30645 8.41805 8.84277 9.05892 9.62673 11.11570 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013025 B = 0.003598 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.164833 B = 7779.704574 C = 8329.402244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.065 3.935 4 C 0.113 3.887 5 N -0.557 5.557 6 C 0.245 3.755 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.891 5.891 11 Si 0.897 3.103 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.553 3.447 16 O -0.531 6.531 17 C 0.062 3.938 18 C 0.095 3.905 19 N -0.431 5.431 20 C 0.034 3.966 21 C 0.244 3.756 22 N -0.483 5.483 23 C 0.049 3.951 24 C -0.127 4.127 25 C -0.143 4.143 26 C 0.049 3.951 27 N -0.389 5.389 28 H 0.081 0.919 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.262 0.738 38 H 0.185 0.815 39 H 0.163 0.837 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.145 23.001 4.628 25.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C -0.012 4.012 4 C -0.011 4.011 5 N -0.285 5.285 6 C 0.127 3.873 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.530 5.530 11 Si 0.725 3.275 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.336 3.664 16 O -0.409 6.409 17 C -0.080 4.080 18 C -0.064 4.064 19 N -0.145 5.145 20 C -0.131 4.131 21 C 0.010 3.990 22 N -0.206 5.206 23 C -0.077 4.077 24 C -0.165 4.165 25 C -0.181 4.181 26 C -0.078 4.078 27 N -0.109 5.109 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.130 0.870 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.202 0.798 39 H 0.181 0.819 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.926 21.845 4.408 24.396 hybrid contribution 0.803 0.653 -0.165 1.049 sum -9.123 22.499 4.244 24.646 Atomic orbital electron populations 1.22633 0.82439 1.02188 0.98909 1.88054 1.18429 1.28251 1.95178 1.22871 0.94896 0.83866 0.99589 1.21956 0.91659 1.00094 0.87426 1.48152 1.60953 1.11371 1.08069 1.19457 0.96151 0.72349 0.99368 1.21472 0.97352 0.92666 1.45141 0.92463 1.24911 0.97786 0.95936 0.95352 1.69952 1.35894 0.99140 1.48055 0.86463 0.84710 0.78162 0.78187 1.19871 1.20969 1.20936 1.17567 0.80126 0.83468 0.85196 1.90780 1.48502 1.71743 1.29848 1.22805 0.97237 0.97641 0.90316 1.23819 0.94363 0.88816 0.99393 1.68477 1.08830 1.11937 1.25227 1.24421 0.96406 1.01682 0.90604 1.20925 0.96257 0.90803 0.91019 1.60230 1.04488 1.32393 1.23510 1.23204 0.94093 0.91538 0.98908 1.22716 0.96292 0.98213 0.99269 1.22823 0.99874 0.96183 0.99221 1.22952 0.91491 0.92618 1.00696 1.68847 1.07766 1.10463 1.23818 0.90047 0.94795 0.95017 0.93069 0.94014 0.89932 0.86967 0.93529 0.93699 0.92825 0.79767 0.81949 0.92876 0.89078 0.90210 0.90007 0.90019 0.91119 0.89320 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 11.01 101.05 1.11 1.61 16 2 O -0.38 -7.14 10.28 -35.23 -0.36 -7.51 16 3 C 0.07 1.10 5.48 37.16 0.20 1.30 16 4 C 0.11 2.12 5.39 -4.04 -0.02 2.10 16 5 N -0.56 -12.67 2.42 -176.07 -0.43 -13.09 16 6 C 0.25 6.70 5.19 -5.19 -0.03 6.68 16 7 C -0.53 -15.30 9.39 -34.44 -0.32 -15.62 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 11 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 C 0.55 12.13 7.61 -12.20 -0.09 12.04 16 16 O -0.53 -13.31 15.86 5.35 0.08 -13.23 16 17 C 0.06 1.07 6.45 -82.87 -0.53 0.54 16 18 C 0.09 1.45 10.76 -17.02 -0.18 1.27 16 19 N -0.43 -5.85 10.48 -12.54 -0.13 -5.98 16 20 C 0.03 0.39 8.93 -16.98 -0.15 0.24 16 21 C 0.24 2.99 5.65 -154.90 -0.88 2.11 16 22 N -0.48 -4.73 5.24 -169.84 -0.89 -5.62 16 23 C 0.05 0.37 6.56 -2.30 -0.02 0.36 16 24 C -0.13 -0.66 7.08 -24.59 -0.17 -0.84 16 25 C -0.14 -0.70 6.94 -24.91 -0.17 -0.88 16 26 C 0.05 0.36 6.47 -2.84 -0.02 0.34 16 27 N -0.39 -5.92 4.56 -8.82 -0.04 -5.96 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.72 6.80 -51.93 -0.35 0.36 16 33 H 0.08 1.64 8.02 -51.93 -0.42 1.22 16 34 H 0.11 1.96 5.33 -51.93 -0.28 1.69 16 35 H 0.05 1.33 7.73 -51.93 -0.40 0.93 16 36 H 0.04 1.37 7.28 -51.93 -0.38 0.99 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.19 2.72 7.65 -52.49 -0.40 2.32 16 39 H 0.16 1.32 7.79 -52.49 -0.41 0.91 16 40 H 0.05 0.40 6.95 -51.93 -0.36 0.04 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.46 6.91 -51.93 -0.36 0.10 16 LS Contribution 383.35 15.07 5.78 5.78 Total: -1.00 -34.22 383.35 -8.77 -42.99 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.13 Total: -1.22 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: -1.37 Total: 12.97 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.75 Total: -56.96 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.28 Total: -20.73 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.22 -8.77 -42.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601035310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.182 kcal (2) G-P(sol) polarization free energy of solvation -34.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds