Wall clock time and date at job start Tue Mar 31 2020 18:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35514 * 117.00255 * 2 1 4 4 C 1.39355 * 120.02683 * 179.97438 * 3 2 1 5 5 C 1.38416 * 118.03572 * 179.77024 * 4 3 2 6 6 C 1.39981 * 117.96740 * 0.48801 * 5 4 3 7 7 C 1.47934 * 120.11488 * 179.77752 * 6 5 4 8 8 O 1.21548 * 119.99954 * 359.72895 * 7 6 5 9 9 N 1.34773 * 120.00035 * 179.72330 * 7 6 5 10 10 C 1.46501 * 120.00347 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47407 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.45027 * 64.99932 * 11 10 9 13 13 C 1.54863 * 109.42541 * 184.93041 * 11 10 9 14 14 C 1.47094 * 110.32166 * 191.27765 * 13 11 10 15 15 C 1.52568 * 114.33027 * 297.19892 * 14 13 11 16 16 C 1.50878 * 109.35226 * 85.02236 * 15 14 13 17 17 C 1.53947 * 110.09373 * 268.11307 * 16 15 14 18 18 N 1.44579 * 109.44892 * 305.05110 * 11 10 9 19 19 C 1.36938 * 118.63964 * 329.24662 * 18 11 10 20 20 H 1.08001 * 120.00377 * 332.26812 * 19 18 11 21 21 C 1.38813 * 119.99722 * 152.26475 * 19 18 11 22 22 N 1.31619 * 120.00004 * 160.28448 * 21 19 18 23 23 Si 1.86798 * 120.00336 * 340.29162 * 21 19 18 24 24 H 1.48500 * 109.47287 * 87.42091 * 23 21 19 25 25 H 1.48492 * 109.47550 * 207.42531 * 23 21 19 26 26 H 1.48503 * 109.46870 * 327.42669 * 23 21 19 27 27 N 1.32749 * 119.76563 * 359.50813 * 6 5 4 28 28 N 1.28349 * 122.08935 * 0.24843 * 27 6 5 29 29 H 1.08997 * 109.47808 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47042 * 300.00419 * 1 2 3 31 31 H 1.08997 * 109.47013 * 59.99410 * 1 2 3 32 32 H 1.07999 * 120.98025 * 0.02583 * 4 3 2 33 33 H 1.07994 * 121.01425 * 180.24372 * 5 4 3 34 34 H 0.97005 * 119.99815 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.47152 * 59.99797 * 10 9 7 36 36 H 1.09004 * 109.46880 * 299.99975 * 10 9 7 37 37 H 1.08994 * 109.33427 * 311.54178 * 13 11 10 38 38 H 1.09001 * 109.32841 * 71.02353 * 13 11 10 39 39 H 1.08993 * 108.51737 * 175.93897 * 14 13 11 40 40 H 1.08998 * 108.39013 * 58.35829 * 14 13 11 41 41 H 1.09001 * 109.48658 * 325.05572 * 15 14 13 42 42 H 1.09003 * 109.49065 * 204.98796 * 15 14 13 43 43 H 1.09002 * 109.36528 * 147.92238 * 16 15 14 44 44 H 1.09000 * 109.26624 * 28.23993 * 16 15 14 45 45 H 1.09006 * 108.94444 * 279.87922 * 17 16 15 46 46 H 1.08994 * 108.94857 * 161.25064 * 17 16 15 47 47 H 0.97003 * 120.00220 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4359 1.2809 0.0005 5 6 4.0211 2.5353 -0.0044 6 6 3.1783 3.6529 0.0009 7 6 3.7531 5.0160 0.0010 8 8 4.9592 5.1670 0.0014 9 7 2.9395 6.0905 0.0005 10 6 3.5087 7.4404 0.0000 11 6 2.3777 8.4708 -0.0012 12 1 1.8164 8.3947 0.9301 13 6 2.9770 9.8932 -0.1273 14 6 1.9453 10.9076 0.1376 15 6 0.7850 10.8976 -0.8530 16 6 -0.2377 9.8785 -0.4148 17 6 0.0513 8.5199 -1.0788 18 7 1.4951 8.2156 -1.1175 19 6 2.0205 7.6694 -2.2581 20 1 3.0568 7.8391 -2.5105 21 6 1.2211 6.8974 -3.0898 22 7 1.5746 6.6967 -4.3417 23 14 -0.3566 6.1434 -2.4326 24 1 -1.4701 7.1140 -2.5853 25 1 -0.6693 4.9075 -3.1940 26 1 -0.1846 5.8095 -0.9959 27 7 1.8615 3.4853 0.0005 28 7 1.3224 2.3205 0.0000 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 4.0399 0.3856 0.0005 33 1 5.0951 2.6482 -0.0081 34 1 1.9770 5.9700 -0.0003 35 1 4.1235 7.5752 -0.8900 36 1 4.1233 7.5759 0.8900 37 1 3.7885 10.0078 0.5913 38 1 3.3686 10.0317 -1.1350 39 1 2.4130 11.8917 0.1129 40 1 1.5472 10.7400 1.1384 41 1 1.1557 10.6379 -1.8445 42 1 0.3244 11.8851 -0.8836 43 1 -1.2326 10.2175 -0.7036 44 1 -0.1939 9.7678 0.6687 45 1 -0.3346 8.5350 -2.0981 46 1 -0.4606 7.7367 -0.5198 47 1 1.0162 6.1569 -4.9228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969103607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:27 Heat of formation + Delta-G solvation = 13.723399 kcal Electronic energy + Delta-G solvation = -30208.081141 eV Core-core repulsion = 26199.941160 eV Total energy + Delta-G solvation = -4008.139981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.31447 -39.39252 -38.58091 -37.98200 -34.70730 -33.57722 -33.24405 -32.33187 -31.50917 -31.15563 -27.91800 -27.32189 -25.89230 -25.05520 -24.02001 -23.50998 -22.32375 -20.58641 -19.80652 -19.55991 -18.79446 -17.93463 -17.61801 -16.46452 -16.25800 -15.62824 -15.33357 -15.19733 -14.81251 -14.69747 -14.45031 -14.27518 -14.06002 -13.96572 -13.80287 -13.25516 -13.03726 -12.73412 -12.24090 -12.21676 -12.18934 -11.91140 -11.84043 -11.69154 -11.58606 -11.29902 -10.91962 -10.51860 -10.37445 -10.20253 -10.11853 -10.06194 -9.85266 -9.74806 -9.64566 -9.64328 -9.26822 -9.24051 -8.59078 -8.36205 -6.93797 -5.92629 -3.31770 0.58490 0.69275 2.68459 2.90650 3.35979 3.46625 3.55111 3.58474 3.83460 3.97009 4.26468 4.55516 4.70457 4.78505 4.81872 5.01697 5.05355 5.11521 5.25778 5.31862 5.36178 5.40043 5.47920 5.52302 5.65208 5.72470 5.79499 5.88940 5.93857 5.98659 6.18439 6.22006 6.35496 6.42630 6.46841 6.51491 6.62239 6.66204 6.75953 6.78536 6.84141 6.95009 7.01583 7.08113 7.98958 8.05679 8.36887 8.50432 8.65525 8.99143 9.75568 10.04611 11.22699 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013719 B = 0.004178 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.524458 B = 6699.454452 C = 7614.391454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.299 6.299 3 C 0.270 3.730 4 C -0.142 4.142 5 C -0.033 4.033 6 C 0.004 3.996 7 C 0.575 3.425 8 O -0.548 6.548 9 N -0.670 5.670 10 C 0.126 3.874 11 C 0.175 3.825 12 H 0.049 0.951 13 C -0.135 4.135 14 C -0.102 4.102 15 C -0.110 4.110 16 C -0.132 4.132 17 C 0.125 3.875 18 N -0.597 5.597 19 C -0.262 4.262 20 H 0.085 0.915 21 C 0.032 3.968 22 N -0.906 5.906 23 Si 0.879 3.121 24 H -0.292 1.292 25 H -0.310 1.310 26 H -0.263 1.263 27 N -0.164 5.164 28 N -0.299 5.299 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.162 0.838 33 H 0.170 0.830 34 H 0.415 0.585 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.047 0.953 41 H 0.079 0.921 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.020 0.980 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 -6.076 11.548 13.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.203 6.203 3 C 0.086 3.914 4 C -0.172 4.172 5 C -0.061 4.061 6 C -0.145 4.145 7 C 0.357 3.643 8 O -0.426 6.426 9 N -0.319 5.319 10 C 0.002 3.998 11 C 0.066 3.934 12 H 0.067 0.933 13 C -0.176 4.176 14 C -0.139 4.139 15 C -0.147 4.147 16 C -0.171 4.171 17 C 0.000 4.000 18 N -0.320 5.320 19 C -0.390 4.390 20 H 0.103 0.897 21 C -0.168 4.168 22 N -0.548 5.548 23 Si 0.710 3.290 24 H -0.220 1.220 25 H -0.238 1.238 26 H -0.188 1.188 27 N -0.011 5.011 28 N -0.157 5.157 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.179 0.821 33 H 0.187 0.813 34 H 0.252 0.748 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.038 0.962 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.708 -5.658 11.408 12.754 hybrid contribution -0.427 -1.188 -0.002 1.263 sum -1.135 -6.846 11.406 13.352 Atomic orbital electron populations 1.23051 0.76371 1.03539 1.03306 1.86182 1.23590 1.23371 1.87138 1.21676 0.91083 0.87208 0.91430 1.21482 0.92106 0.99806 1.03790 1.22298 1.02994 0.90054 0.90770 1.22892 0.91809 0.96766 1.03031 1.17281 0.86177 0.82912 0.77953 1.90750 1.13726 1.85863 1.52258 1.45613 1.11182 1.05187 1.69874 1.21631 0.96294 0.80389 1.01484 1.20544 0.90290 0.91778 0.90755 0.93307 1.21331 0.97546 0.96532 1.02143 1.20295 0.96710 0.98243 0.98678 1.20972 0.95612 0.97093 1.01061 1.21853 0.98349 0.97020 0.99842 1.21705 0.85041 0.93278 0.99934 1.44013 1.03245 1.71864 1.12870 1.18776 0.97981 1.25040 0.97171 0.89715 1.25224 0.97660 0.98235 0.95634 1.69834 1.39405 1.41207 1.04399 0.87160 0.84207 0.78059 0.79554 1.21981 1.23825 1.18828 1.73101 1.10288 1.13614 1.04146 1.73224 1.31420 0.94063 1.16952 0.88043 0.91713 0.91586 0.82071 0.81269 0.74799 0.90240 0.92292 0.92891 0.91233 0.93684 0.93459 0.90247 0.93653 0.92688 0.92966 0.91082 0.96201 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.39 101.05 1.05 1.37 16 2 O -0.30 -3.67 10.48 -18.24 -0.19 -3.86 16 3 C 0.27 3.86 7.57 -16.77 -0.13 3.74 16 4 C -0.14 -1.72 10.14 -39.10 -0.40 -2.12 16 5 C -0.03 -0.45 9.72 -38.86 -0.38 -0.83 16 6 C 0.00 0.07 6.83 -82.85 -0.57 -0.49 16 7 C 0.57 11.22 7.81 -12.29 -0.10 11.12 16 8 O -0.55 -11.34 16.39 5.32 0.09 -11.25 16 9 N -0.67 -13.22 4.71 -61.22 -0.29 -13.51 16 10 C 0.13 2.32 4.52 -4.04 -0.02 2.31 16 11 C 0.17 3.13 2.19 -67.97 -0.15 2.98 16 12 H 0.05 0.83 8.06 -51.93 -0.42 0.41 16 13 C -0.13 -2.14 5.06 -28.58 -0.14 -2.29 16 14 C -0.10 -1.49 5.16 -29.79 -0.15 -1.64 16 15 C -0.11 -1.76 5.51 -28.02 -0.15 -1.92 16 16 C -0.13 -2.18 5.71 -27.30 -0.16 -2.34 16 17 C 0.13 2.57 3.96 -2.94 -0.01 2.56 16 18 N -0.60 -12.71 1.55 -164.47 -0.26 -12.96 16 19 C -0.26 -6.69 8.08 -15.06 -0.12 -6.82 16 20 H 0.09 2.40 6.90 -52.49 -0.36 2.03 16 21 C 0.03 0.88 5.16 -17.43 -0.09 0.79 16 22 N -0.91 -27.36 13.97 55.49 0.78 -26.58 16 23 Si 0.88 22.24 23.99 -169.99 -4.08 18.16 16 24 H -0.29 -7.18 6.49 56.52 0.37 -6.81 16 25 H -0.31 -8.32 7.11 56.52 0.40 -7.92 16 26 H -0.26 -6.40 6.66 56.52 0.38 -6.03 16 27 N -0.16 -3.11 10.73 33.32 0.36 -2.75 16 28 N -0.30 -5.16 10.40 30.54 0.32 -4.84 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 31 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 32 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.17 1.98 7.71 -52.49 -0.40 1.57 16 34 H 0.41 8.62 7.37 -40.82 -0.30 8.32 16 35 H 0.08 1.65 6.83 -51.93 -0.35 1.30 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.65 7.35 -51.93 -0.38 0.27 16 41 H 0.08 1.51 7.48 -51.93 -0.39 1.12 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.80 7.31 -51.93 -0.38 0.42 16 45 H 0.07 1.64 5.18 -51.93 -0.27 1.38 16 46 H 0.02 0.42 6.00 -51.93 -0.31 0.11 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 370.03 15.07 5.58 5.58 Total: -1.00 -31.78 370.03 -6.20 -37.98 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.99 Total: 7.61 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -1.51 Total: 6.43 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.91 Total: -60.64 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.10 Total: -15.11 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.08 Total: 18.16 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.78 -6.20 -37.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969103607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.703 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds