Wall clock time and date at job start Tue Mar 31 2020 17:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 119.99941 * 2 1 4 4 H 1.07996 * 120.00106 * 199.81536 * 3 2 1 5 5 C 1.38808 * 119.99863 * 19.81721 * 3 2 1 6 6 N 1.31616 * 120.00526 * 10.40997 * 5 3 2 7 7 Si 1.86801 * 120.00006 * 190.41102 * 5 3 2 8 8 H 1.48507 * 109.47205 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47590 * 119.99799 * 7 5 3 10 10 H 1.48499 * 109.47294 * 240.00206 * 7 5 3 11 11 C 1.46505 * 120.00054 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47057 * 90.00263 * 11 2 1 13 13 H 1.09002 * 109.49697 * 304.93426 * 12 11 2 14 14 C 1.53099 * 109.48703 * 184.85368 * 12 11 2 15 15 C 1.53039 * 109.50560 * 178.69823 * 14 12 11 16 16 C 1.53194 * 109.33444 * 61.34544 * 15 14 12 17 17 N 1.46920 * 108.78078 * 305.34974 * 16 15 14 18 18 C 1.34776 * 120.63816 * 233.58418 * 17 16 15 19 19 O 1.21610 * 120.00582 * 171.39577 * 18 17 16 20 20 C 1.47304 * 119.99438 * 351.40457 * 18 17 16 21 21 C 1.37922 * 125.89908 * 150.92949 * 20 18 17 22 22 C 1.39444 * 107.46128 * 179.87253 * 21 20 18 23 23 C 1.37925 * 107.45992 * 0.38302 * 22 21 20 24 24 C 1.47292 * 125.90072 * 179.79427 * 23 22 21 25 25 N 1.34778 * 120.00319 * 179.97438 * 24 23 22 26 26 O 1.21619 * 120.00405 * 359.96098 * 24 23 22 27 27 N 1.36752 * 125.89784 * 331.22786 * 20 18 17 28 28 H 0.96997 * 125.66424 * 0.02874 * 27 20 18 29 29 C 1.46928 * 118.73675 * 53.61054 * 17 16 15 30 30 H 1.08996 * 109.47542 * 276.01333 * 1 2 3 31 31 H 1.09004 * 109.47365 * 36.01270 * 1 2 3 32 32 H 1.09003 * 109.47362 * 156.01269 * 1 2 3 33 33 H 0.97001 * 120.00778 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.46714 * 329.99994 * 11 2 1 35 35 H 1.09000 * 109.47023 * 210.00388 * 11 2 1 36 36 H 1.08997 * 109.50429 * 58.67550 * 14 12 11 37 37 H 1.09003 * 109.45340 * 298.69293 * 14 12 11 38 38 H 1.09004 * 109.49455 * 301.38723 * 15 14 12 39 39 H 1.08990 * 109.50203 * 181.31641 * 15 14 12 40 40 H 1.09008 * 109.58548 * 65.14349 * 16 15 14 41 41 H 1.09002 * 109.58583 * 185.41938 * 16 15 14 42 42 H 1.08001 * 126.27380 * 0.02562 * 21 20 18 43 43 H 1.08000 * 126.26699 * 180.10705 * 22 21 20 44 44 H 0.97003 * 119.99620 * 0.02562 * 25 24 23 45 45 H 0.96994 * 120.00404 * 179.97438 * 25 24 23 46 46 H 1.09005 * 109.58697 * 66.17518 * 29 17 16 47 47 H 1.09002 * 109.59046 * 186.46036 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1817 1.2136 -0.3170 5 6 1.5172 2.3524 0.4075 6 7 0.3358 2.2935 0.9846 7 14 2.3430 4.0060 0.1370 8 1 3.6560 3.8012 -0.5258 9 1 1.4807 4.8552 -0.7236 10 1 2.5492 4.6764 1.4460 11 6 2.1975 -1.2688 0.0006 12 6 2.4526 -1.7110 -1.4417 13 1 1.5063 -1.7570 -1.9809 14 6 3.1099 -3.0937 -1.4433 15 6 3.3356 -3.5506 -2.8863 16 6 4.2765 -2.5666 -3.5886 17 7 3.7219 -1.2117 -3.4651 18 6 3.5276 -0.4468 -4.5576 19 8 2.9264 0.6061 -4.4638 20 6 4.0435 -0.8863 -5.8655 21 6 3.4994 -0.5777 -7.0947 22 6 4.2910 -1.1871 -8.0676 23 6 5.2999 -1.8646 -7.4154 24 6 6.3647 -2.6546 -8.0569 25 7 7.2955 -3.2703 -7.3012 26 8 6.4040 -2.7516 -9.2686 27 7 5.1414 -1.6756 -6.0703 28 1 5.7124 -2.0412 -5.3767 29 6 3.3835 -0.7062 -2.1276 30 1 -0.3634 0.1077 1.0219 31 1 -0.3634 0.8313 -0.6042 32 1 -0.3634 -0.9389 -0.4178 33 1 -0.1064 3.1087 1.2690 34 1 1.6084 -2.0281 0.5147 35 1 3.1499 -1.1382 0.5144 36 1 2.4605 -3.8060 -0.9344 37 1 4.0674 -3.0411 -0.9251 38 1 2.3812 -3.5796 -3.4122 39 1 3.7821 -4.5448 -2.8876 40 1 5.2598 -2.6031 -3.1195 41 1 4.3641 -2.8331 -4.6419 42 1 2.6224 0.0274 -7.2715 43 1 4.1390 -1.1410 -9.1358 44 1 7.2638 -3.1935 -6.3347 45 1 7.9965 -3.7909 -7.7236 46 1 4.2939 -0.5910 -1.5394 47 1 2.8821 0.2575 -2.2173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480085708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:31 Heat of formation + Delta-G solvation = 3.821413 kcal Electronic energy + Delta-G solvation = -29535.462057 eV Core-core repulsion = 25526.892694 eV Total energy + Delta-G solvation = -4008.569363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 6.01 seconds Orbital eigenvalues (eV) -41.94204 -39.90401 -39.02398 -37.54934 -35.59781 -34.29128 -33.22518 -31.74557 -31.42306 -30.35156 -29.65981 -26.11516 -26.02572 -25.55964 -23.74035 -22.71694 -21.68152 -20.92247 -20.70714 -20.08285 -19.55058 -18.39718 -17.46696 -17.13241 -16.69393 -15.99372 -15.60966 -15.14099 -15.02029 -14.95273 -14.65423 -14.30854 -14.11292 -13.78494 -13.63721 -13.51303 -13.15838 -13.01513 -12.93062 -12.89248 -12.58686 -12.30882 -11.76158 -11.29735 -11.10760 -10.88621 -10.78681 -10.77477 -10.63973 -10.39589 -10.31412 -10.28389 -10.15500 -9.95726 -9.85628 -9.63200 -9.36051 -8.69931 -8.49129 -8.46529 -6.73161 -5.66651 -3.11862 0.79344 1.98083 2.45688 2.87561 2.96051 2.98400 3.27148 3.43069 3.51179 3.52094 4.31195 4.41319 4.51398 4.56006 4.77418 4.88583 4.96805 5.01340 5.14254 5.28753 5.33385 5.50569 5.61953 5.65769 5.69816 5.78304 5.85698 5.98028 6.02500 6.10090 6.14056 6.21524 6.26786 6.39555 6.50228 6.53388 6.60974 6.68344 6.79270 6.81041 6.90375 6.93689 7.41852 7.50012 7.69915 7.76574 7.87383 8.14712 8.42881 9.28717 9.92437 10.39319 11.37756 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.003089 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.464512 B = 9062.767249 C =10069.255229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.604 5.604 3 C -0.250 4.250 4 H 0.070 0.930 5 C 0.002 3.998 6 N -0.910 5.910 7 Si 0.902 3.098 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.292 1.292 11 C 0.159 3.841 12 C -0.121 4.121 13 H 0.068 0.932 14 C -0.114 4.114 15 C -0.130 4.130 16 C 0.092 3.908 17 N -0.609 5.609 18 C 0.577 3.423 19 O -0.503 6.503 20 C 0.009 3.991 21 C -0.132 4.132 22 C -0.110 4.110 23 C -0.040 4.040 24 C 0.595 3.405 25 N -0.855 5.855 26 O -0.526 6.526 27 N -0.524 5.524 28 H 0.417 0.583 29 C 0.123 3.877 30 H 0.028 0.972 31 H 0.046 0.954 32 H -0.007 1.007 33 H 0.251 0.749 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.396 0.604 45 H 0.409 0.591 46 H 0.061 0.939 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.176 -15.685 -12.028 23.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.326 5.326 3 C -0.379 4.379 4 H 0.088 0.912 5 C -0.196 4.196 6 N -0.556 5.556 7 Si 0.732 3.268 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.219 1.219 11 C 0.030 3.970 12 C -0.143 4.143 13 H 0.086 0.914 14 C -0.153 4.153 15 C -0.169 4.169 16 C -0.032 4.032 17 N -0.343 5.343 18 C 0.363 3.637 19 O -0.376 6.376 20 C -0.109 4.109 21 C -0.158 4.158 22 C -0.136 4.136 23 C -0.156 4.156 24 C 0.381 3.619 25 N -0.419 5.419 26 O -0.401 6.401 27 N -0.125 5.125 28 H 0.258 0.742 29 C 0.002 3.998 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.011 0.989 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.175 0.825 43 H 0.174 0.826 44 H 0.224 0.776 45 H 0.241 0.759 46 H 0.080 0.920 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.710 -14.953 -12.569 22.775 hybrid contribution 0.992 0.454 0.593 1.242 sum 12.702 -14.498 -11.976 22.693 Atomic orbital electron populations 1.20800 0.82454 0.95183 0.99422 1.43927 1.01973 1.00562 1.86160 1.19205 0.96311 0.85082 1.37335 0.91209 1.24959 0.97311 0.98347 0.99012 1.70088 1.15609 1.26441 1.43415 0.86220 0.78881 0.84501 0.77188 1.20347 1.21558 1.21895 1.20695 0.96124 0.88670 0.91471 1.22284 0.98271 0.92771 1.00990 0.91379 1.21576 1.01005 0.97628 0.95053 1.21864 0.99940 0.97629 0.97422 1.21994 0.97421 0.82908 1.00860 1.48247 1.63604 1.14666 1.07798 1.17295 0.80255 0.84339 0.81821 1.90922 1.39812 1.22832 1.84057 1.20832 0.92675 1.01344 0.96025 1.21331 1.01963 1.03140 0.89355 1.21302 0.93911 0.98423 0.99992 1.20441 1.02611 1.09691 0.82866 1.17160 0.80239 0.78076 0.86405 1.43726 1.32124 1.55459 1.10607 1.90885 1.74430 1.61787 1.13043 1.42403 1.23790 1.39452 1.06903 0.74198 1.21968 0.98570 1.00344 0.78880 0.95347 0.93551 0.98879 0.93893 0.94205 0.93521 0.91732 0.92025 0.91403 0.91100 0.91392 0.90524 0.82534 0.82636 0.77648 0.75894 0.92034 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.13 8.95 59.85 0.54 4.66 16 2 N -0.60 -14.74 2.82 -181.12 -0.51 -15.25 16 3 C -0.25 -6.70 8.22 -15.06 -0.12 -6.83 16 4 H 0.07 1.81 6.92 -52.49 -0.36 1.45 16 5 C 0.00 0.04 5.17 -17.43 -0.09 -0.05 16 6 N -0.91 -26.72 10.38 55.49 0.58 -26.14 16 7 Si 0.90 22.43 29.57 -169.99 -5.03 17.40 16 8 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 9 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 C 0.16 3.02 5.15 -4.04 -0.02 3.00 16 12 C -0.12 -1.93 2.55 -90.47 -0.23 -2.16 16 13 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.11 -1.31 5.17 -26.66 -0.14 -1.45 16 15 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 16 C 0.09 0.83 5.26 -3.71 -0.02 0.81 16 17 N -0.61 -8.37 2.97 -174.08 -0.52 -8.89 16 18 C 0.58 9.04 7.61 -12.57 -0.10 8.95 16 19 O -0.50 -10.35 16.43 5.27 0.09 -10.26 16 20 C 0.01 0.11 6.18 -82.10 -0.51 -0.40 16 21 C -0.13 -1.59 10.72 -39.25 -0.42 -2.01 16 22 C -0.11 -1.18 10.60 -39.25 -0.42 -1.60 16 23 C -0.04 -0.39 7.04 -82.10 -0.58 -0.97 16 24 C 0.60 5.54 8.08 -12.58 -0.10 5.43 16 25 N -0.86 -4.05 8.87 30.40 0.27 -3.78 16 26 O -0.53 -6.90 17.71 5.26 0.09 -6.80 16 27 N -0.52 -4.52 4.60 -5.89 -0.03 -4.55 16 28 H 0.42 2.34 6.14 -40.82 -0.25 2.09 16 29 C 0.12 2.07 4.69 -3.71 -0.02 2.05 16 30 H 0.03 0.76 7.39 -51.93 -0.38 0.37 16 31 H 0.05 1.26 7.10 -51.93 -0.37 0.90 16 32 H -0.01 -0.16 8.03 -51.93 -0.42 -0.58 16 33 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 35 H 0.05 0.88 8.04 -51.93 -0.42 0.46 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 41 H 0.08 0.57 4.71 -51.93 -0.24 0.33 16 42 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.40 0.81 7.93 -40.82 -0.32 0.49 16 45 H 0.41 1.41 8.93 -40.82 -0.36 1.04 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.12 2.59 5.45 -51.93 -0.28 2.31 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -35.36 376.27 -8.55 -43.91 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.78 Total: 0.62 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -2.39 Total: 8.08 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.21 Total: -58.62 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: 0.18 Total: -17.06 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.36 -8.55 -43.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480085708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.731 kcal (2) G-P(sol) polarization free energy of solvation -35.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.02 seconds