Wall clock time and date at job start Tue Mar 31 2020 17:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 119.99941 * 2 1 4 4 H 1.07996 * 120.00106 * 199.81536 * 3 2 1 5 5 C 1.38808 * 119.99863 * 19.81721 * 3 2 1 6 6 N 1.31616 * 120.00526 * 10.40997 * 5 3 2 7 7 Si 1.86801 * 120.00006 * 190.41102 * 5 3 2 8 8 H 1.48507 * 109.47205 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47590 * 119.99799 * 7 5 3 10 10 H 1.48499 * 109.47294 * 240.00206 * 7 5 3 11 11 C 1.46505 * 120.00054 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47057 * 90.00263 * 11 2 1 13 13 H 1.09002 * 109.49697 * 304.93426 * 12 11 2 14 14 C 1.53099 * 109.48703 * 184.85368 * 12 11 2 15 15 C 1.53039 * 109.50560 * 178.69823 * 14 12 11 16 16 C 1.53194 * 109.33444 * 61.34544 * 15 14 12 17 17 N 1.46920 * 108.78078 * 305.34974 * 16 15 14 18 18 C 1.34776 * 120.63816 * 233.58418 * 17 16 15 19 19 O 1.21610 * 120.00582 * 171.39577 * 18 17 16 20 20 C 1.47304 * 119.99438 * 351.40457 * 18 17 16 21 21 C 1.37922 * 125.89908 * 150.92949 * 20 18 17 22 22 C 1.39444 * 107.46128 * 179.87253 * 21 20 18 23 23 C 1.37925 * 107.45992 * 0.38302 * 22 21 20 24 24 C 1.47292 * 125.90072 * 179.79427 * 23 22 21 25 25 N 1.34778 * 120.00319 * 179.97438 * 24 23 22 26 26 O 1.21619 * 120.00405 * 359.96098 * 24 23 22 27 27 N 1.36752 * 125.89784 * 331.22786 * 20 18 17 28 28 H 0.96997 * 125.66424 * 0.02874 * 27 20 18 29 29 C 1.46928 * 118.73675 * 53.61054 * 17 16 15 30 30 H 1.08996 * 109.47542 * 276.01333 * 1 2 3 31 31 H 1.09004 * 109.47365 * 36.01270 * 1 2 3 32 32 H 1.09003 * 109.47362 * 156.01269 * 1 2 3 33 33 H 0.97001 * 120.00778 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.46714 * 329.99994 * 11 2 1 35 35 H 1.09000 * 109.47023 * 210.00388 * 11 2 1 36 36 H 1.08997 * 109.50429 * 58.67550 * 14 12 11 37 37 H 1.09003 * 109.45340 * 298.69293 * 14 12 11 38 38 H 1.09004 * 109.49455 * 301.38723 * 15 14 12 39 39 H 1.08990 * 109.50203 * 181.31641 * 15 14 12 40 40 H 1.09008 * 109.58548 * 65.14349 * 16 15 14 41 41 H 1.09002 * 109.58583 * 185.41938 * 16 15 14 42 42 H 1.08001 * 126.27380 * 0.02562 * 21 20 18 43 43 H 1.08000 * 126.26699 * 180.10705 * 22 21 20 44 44 H 0.97003 * 119.99620 * 0.02562 * 25 24 23 45 45 H 0.96994 * 120.00404 * 179.97438 * 25 24 23 46 46 H 1.09005 * 109.58697 * 66.17518 * 29 17 16 47 47 H 1.09002 * 109.59046 * 186.46036 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1817 1.2136 -0.3170 5 6 1.5172 2.3524 0.4075 6 7 0.3358 2.2935 0.9846 7 14 2.3430 4.0060 0.1370 8 1 3.6560 3.8012 -0.5258 9 1 1.4807 4.8552 -0.7236 10 1 2.5492 4.6764 1.4460 11 6 2.1975 -1.2688 0.0006 12 6 2.4526 -1.7110 -1.4417 13 1 1.5063 -1.7570 -1.9809 14 6 3.1099 -3.0937 -1.4433 15 6 3.3356 -3.5506 -2.8863 16 6 4.2765 -2.5666 -3.5886 17 7 3.7219 -1.2117 -3.4651 18 6 3.5276 -0.4468 -4.5576 19 8 2.9264 0.6061 -4.4638 20 6 4.0435 -0.8863 -5.8655 21 6 3.4994 -0.5777 -7.0947 22 6 4.2910 -1.1871 -8.0676 23 6 5.2999 -1.8646 -7.4154 24 6 6.3647 -2.6546 -8.0569 25 7 7.2955 -3.2703 -7.3012 26 8 6.4040 -2.7516 -9.2686 27 7 5.1414 -1.6756 -6.0703 28 1 5.7124 -2.0412 -5.3767 29 6 3.3835 -0.7062 -2.1276 30 1 -0.3634 0.1077 1.0219 31 1 -0.3634 0.8313 -0.6042 32 1 -0.3634 -0.9389 -0.4178 33 1 -0.1064 3.1087 1.2690 34 1 1.6084 -2.0281 0.5147 35 1 3.1499 -1.1382 0.5144 36 1 2.4605 -3.8060 -0.9344 37 1 4.0674 -3.0411 -0.9251 38 1 2.3812 -3.5796 -3.4122 39 1 3.7821 -4.5448 -2.8876 40 1 5.2598 -2.6031 -3.1195 41 1 4.3641 -2.8331 -4.6419 42 1 2.6224 0.0274 -7.2715 43 1 4.1390 -1.1410 -9.1358 44 1 7.2638 -3.1935 -6.3347 45 1 7.9965 -3.7909 -7.7236 46 1 4.2939 -0.5910 -1.5394 47 1 2.8821 0.2575 -2.2173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480085708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:23 Heat of formation + Delta-G solvation = -23.071182 kcal Electronic energy + Delta-G solvation = -29536.628208 eV Core-core repulsion = 25526.892694 eV Total energy + Delta-G solvation = -4009.735514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 4.58 seconds Orbital eigenvalues (eV) -42.83212 -40.95842 -39.87687 -38.85320 -37.27258 -34.93453 -34.61675 -33.14511 -32.39741 -31.75098 -30.70098 -27.99551 -27.52923 -26.79416 -24.64039 -24.11996 -22.67069 -22.15389 -21.77294 -21.03331 -20.66051 -19.31752 -18.70019 -18.23307 -17.84802 -17.16235 -16.91554 -16.61777 -16.18481 -15.95236 -15.56251 -15.48910 -15.20058 -15.05416 -14.90570 -14.80245 -14.65265 -14.16968 -13.91739 -13.90909 -13.79213 -13.70903 -13.36599 -12.83148 -12.78922 -12.59424 -12.32740 -12.05625 -12.01612 -11.86189 -11.79468 -11.59952 -11.57803 -11.23349 -11.16157 -10.85953 -10.60338 -10.19640 -9.79444 -9.41909 -8.75827 -7.79556 -5.24601 -0.09050 1.03621 1.40902 1.45802 1.52777 1.57606 1.79813 2.20167 2.21358 2.39819 2.50537 3.32551 3.39286 3.66797 3.78670 3.82976 3.97339 4.05317 4.10739 4.11456 4.21721 4.35320 4.41546 4.55982 4.74684 4.79745 4.83842 4.83916 4.88082 4.96669 5.00906 5.03762 5.14814 5.23599 5.33025 5.39405 5.42076 5.51298 5.60446 5.61312 5.65060 5.75087 5.76771 6.03745 6.30242 6.32286 6.34412 6.97778 7.12395 7.18234 7.91464 8.33511 9.23860 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.003089 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.464512 B = 9062.767249 C =10069.255229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.620 5.620 3 C -0.238 4.238 4 H 0.076 0.924 5 C -0.060 4.060 6 N -0.943 5.943 7 Si 0.956 3.044 8 H -0.269 1.269 9 H -0.300 1.300 10 H -0.288 1.288 11 C 0.155 3.845 12 C -0.108 4.108 13 H 0.040 0.960 14 C -0.107 4.107 15 C -0.126 4.126 16 C 0.083 3.917 17 N -0.603 5.603 18 C 0.573 3.427 19 O -0.569 6.569 20 C -0.006 4.006 21 C -0.140 4.140 22 C -0.125 4.125 23 C -0.021 4.021 24 C 0.598 3.402 25 N -0.828 5.828 26 O -0.567 6.567 27 N -0.498 5.498 28 H 0.435 0.565 29 C 0.129 3.871 30 H 0.005 0.995 31 H 0.010 0.990 32 H 0.023 0.977 33 H 0.244 0.756 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.149 0.851 43 H 0.163 0.837 44 H 0.413 0.587 45 H 0.421 0.579 46 H 0.073 0.927 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.570 -19.142 -12.554 27.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.343 5.343 3 C -0.369 4.369 4 H 0.093 0.907 5 C -0.254 4.254 6 N -0.591 5.591 7 Si 0.786 3.214 8 H -0.194 1.194 9 H -0.228 1.228 10 H -0.215 1.215 11 C 0.029 3.971 12 C -0.130 4.130 13 H 0.058 0.942 14 C -0.145 4.145 15 C -0.164 4.164 16 C -0.038 4.038 17 N -0.335 5.335 18 C 0.361 3.639 19 O -0.447 6.447 20 C -0.124 4.124 21 C -0.166 4.166 22 C -0.151 4.151 23 C -0.138 4.138 24 C 0.383 3.617 25 N -0.393 5.393 26 O -0.445 6.445 27 N -0.101 5.101 28 H 0.279 0.721 29 C 0.007 3.993 30 H 0.024 0.976 31 H 0.029 0.971 32 H 0.041 0.959 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.166 0.834 43 H 0.181 0.819 44 H 0.244 0.756 45 H 0.254 0.746 46 H 0.091 0.909 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.198 -18.521 -13.041 27.278 hybrid contribution 0.007 1.383 0.712 1.555 sum 15.206 -17.138 -12.329 26.018 Atomic orbital electron populations 1.20482 0.83256 0.95157 0.97462 1.44171 1.01945 1.02010 1.86222 1.19516 0.96427 0.86094 1.34832 0.90678 1.25644 0.98231 1.01306 1.00207 1.70237 1.16978 1.26473 1.45450 0.85349 0.78115 0.81126 0.76831 1.19392 1.22794 1.21504 1.20959 0.95919 0.86541 0.93721 1.22020 0.97421 0.95656 0.97875 0.94162 1.21538 1.01592 0.94181 0.97221 1.21871 0.99612 0.99578 0.95322 1.22439 0.98884 0.79763 1.02697 1.48259 1.62836 1.16371 1.06079 1.17724 0.79427 0.83617 0.83098 1.90886 1.42954 1.25729 1.85165 1.20217 0.94469 1.03461 0.94214 1.21410 1.02118 1.03123 0.89931 1.21424 0.94333 0.98995 1.00320 1.20540 1.01994 1.08373 0.82890 1.17048 0.80591 0.78128 0.85925 1.43507 1.30731 1.53623 1.11398 1.90885 1.75457 1.63341 1.14814 1.42174 1.22713 1.38172 1.07056 0.72126 1.21602 0.98604 0.98316 0.80819 0.97641 0.97126 0.95888 0.94637 0.92769 0.92810 0.90705 0.90006 0.93105 0.86887 0.87516 0.88661 0.83352 0.81950 0.75609 0.74585 0.90915 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.36 8.95 127.77 1.14 10.50 16 2 N -0.62 -30.87 2.82 -726.94 -2.05 -32.92 16 3 C -0.24 -13.09 8.22 84.03 0.69 -12.40 16 4 H 0.08 3.96 6.92 -2.91 -0.02 3.94 16 5 C -0.06 -3.48 5.17 84.86 0.44 -3.04 16 6 N -0.94 -57.75 10.38 21.65 0.22 -57.52 16 7 Si 0.96 47.68 29.57 68.60 2.03 49.71 16 8 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 9 H -0.30 -15.40 7.11 99.48 0.71 -14.70 16 10 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 11 C 0.15 5.73 5.15 86.38 0.44 6.18 16 12 C -0.11 -3.30 2.55 -10.70 -0.03 -3.33 16 13 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 14 C -0.11 -2.02 5.17 30.64 0.16 -1.86 16 15 C -0.13 -1.75 6.08 30.67 0.19 -1.56 16 16 C 0.08 1.13 5.26 86.36 0.45 1.58 16 17 N -0.60 -15.73 2.97 -822.90 -2.45 -18.17 16 18 C 0.57 18.12 7.61 86.63 0.66 18.78 16 19 O -0.57 -24.88 16.43 -4.06 -0.07 -24.95 16 20 C -0.01 -0.13 6.18 40.69 0.25 0.12 16 21 C -0.14 -3.36 10.72 22.49 0.24 -3.12 16 22 C -0.12 -2.54 10.60 22.49 0.24 -2.30 16 23 C -0.02 -0.34 7.04 40.68 0.29 -0.06 16 24 C 0.60 9.21 8.08 86.62 0.70 9.91 16 25 N -0.83 -4.20 8.87 -175.98 -1.56 -5.76 16 26 O -0.57 -13.65 17.71 -4.09 -0.07 -13.72 16 27 N -0.50 -7.03 4.60 -172.56 -0.79 -7.82 16 28 H 0.43 2.80 6.14 -92.71 -0.57 2.23 16 29 C 0.13 4.28 4.69 86.36 0.41 4.68 16 30 H 0.01 0.30 7.39 -2.39 -0.02 0.28 16 31 H 0.01 0.58 7.10 -2.38 -0.02 0.56 16 32 H 0.02 1.01 8.03 -2.39 -0.02 0.99 16 33 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 34 H 0.05 1.85 8.07 -2.39 -0.02 1.83 16 35 H 0.05 1.92 8.04 -2.39 -0.02 1.90 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 39 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.10 0.96 4.71 -2.39 -0.01 0.95 16 42 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 44 H 0.41 -0.55 7.93 -92.71 -0.74 -1.29 16 45 H 0.42 1.09 8.93 -92.71 -0.83 0.26 16 46 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 47 H 0.06 2.82 5.45 -2.39 -0.01 2.81 16 Total: -1.00 -84.14 376.27 0.43 -83.70 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -1.10 Total: 3.37 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 6.27 Total: 24.09 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -6.63 Total: -122.20 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.14 Total: -38.67 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -84.14 0.43 -83.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480085708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.631 kcal (2) G-P(sol) polarization free energy of solvation -84.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.58 seconds