Wall clock time and date at job start Tue Mar 31 2020 17:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36931 * 120.00082 * 2 1 4 4 H 1.08006 * 120.00272 * 203.87496 * 3 2 1 5 5 C 1.38814 * 120.00131 * 23.87502 * 3 2 1 6 6 N 1.31615 * 119.99901 * 0.80644 * 5 3 2 7 7 Si 1.86806 * 120.00062 * 180.80743 * 5 3 2 8 8 H 1.48503 * 109.46838 * 90.00118 * 7 5 3 9 9 H 1.48496 * 109.46975 * 209.99899 * 7 5 3 10 10 H 1.48496 * 109.47019 * 330.00063 * 7 5 3 11 11 C 1.46505 * 119.99955 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.46873 * 90.00016 * 11 2 1 13 13 H 1.08998 * 109.50196 * 304.93814 * 12 11 2 14 14 C 1.53104 * 109.48770 * 184.85083 * 12 11 2 15 15 C 1.53036 * 109.50581 * 178.70080 * 14 12 11 16 16 C 1.53191 * 109.33796 * 61.35428 * 15 14 12 17 17 N 1.46924 * 108.77464 * 305.34775 * 16 15 14 18 18 C 1.34778 * 120.63394 * 233.58492 * 17 16 15 19 19 O 1.21570 * 119.99813 * 172.81069 * 18 17 16 20 20 C 1.47722 * 119.99886 * 352.81124 * 18 17 16 21 21 C 1.40934 * 125.97357 * 172.38682 * 20 18 17 22 22 C 1.36176 * 107.95116 * 179.75085 * 21 20 18 23 23 N 1.35803 * 107.31085 * 0.76418 * 22 21 20 24 24 N 1.31839 * 125.96875 * 352.69337 * 20 18 17 25 25 C 1.47425 * 108.07199 * 178.98777 * 23 22 21 26 26 C 1.54649 * 102.35176 * 344.74848 * 25 23 22 27 27 O 1.36122 * 140.88245 * 180.76382 * 22 21 20 28 28 C 1.46931 * 118.73918 * 53.61050 * 17 16 15 29 29 H 1.08996 * 109.47379 * 274.91515 * 1 2 3 30 30 H 1.09004 * 109.46827 * 34.91787 * 1 2 3 31 31 H 1.09001 * 109.47271 * 154.91243 * 1 2 3 32 32 H 0.97003 * 120.00414 * 180.02562 * 6 5 3 33 33 H 1.09005 * 109.46664 * 330.00447 * 11 2 1 34 34 H 1.08991 * 109.46870 * 210.00526 * 11 2 1 35 35 H 1.09010 * 109.50257 * 58.67876 * 14 12 11 36 36 H 1.08997 * 109.45488 * 298.70419 * 14 12 11 37 37 H 1.08997 * 109.49973 * 301.38531 * 15 14 12 38 38 H 1.08998 * 109.50037 * 181.31923 * 15 14 12 39 39 H 1.09003 * 109.59018 * 65.13225 * 16 15 14 40 40 H 1.08993 * 109.59175 * 185.41963 * 16 15 14 41 41 H 1.08006 * 126.02429 * 359.91018 * 21 20 18 42 42 H 1.09000 * 110.82931 * 102.95616 * 25 23 22 43 43 H 1.08998 * 110.82814 * 226.53230 * 25 23 22 44 44 H 1.09000 * 110.84593 * 266.64600 * 26 25 23 45 45 H 1.08997 * 111.02672 * 143.09705 * 26 25 23 46 46 H 1.09002 * 109.58661 * 66.17424 * 28 17 16 47 47 H 1.08997 * 109.59144 * 186.46366 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1604 1.2259 -0.3786 5 6 1.5447 2.3366 0.4866 6 7 0.3188 2.2847 0.9625 7 14 2.4707 3.9589 0.4657 8 1 2.2089 4.6618 -0.8160 9 1 2.0124 4.8049 1.5968 10 1 3.9267 3.6995 0.5997 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4417 13 1 1.5063 -1.7570 -1.9809 14 6 3.1099 -3.0938 -1.4433 15 6 3.3355 -3.5506 -2.8864 16 6 4.2766 -2.5667 -3.5886 17 7 3.7220 -1.2118 -3.4650 18 6 3.5277 -0.4469 -4.5576 19 8 2.9493 0.6178 -4.4592 20 6 4.0178 -0.9023 -5.8747 21 6 3.7559 -0.2848 -7.1142 22 6 4.3883 -1.0033 -8.0829 23 7 5.0101 -2.0449 -7.4725 24 7 4.7719 -1.9607 -6.0966 25 6 5.6809 -2.8489 -8.5103 26 6 5.0176 -2.3330 -9.8086 27 8 4.5912 -1.0116 -9.4288 28 6 3.3836 -0.7062 -2.1276 29 1 -0.3634 0.0880 1.0238 30 1 -0.3633 0.8427 -0.5883 31 1 -0.3634 -0.9307 -0.4357 32 1 -0.1042 3.0888 1.3022 33 1 1.6083 -2.0282 0.5147 34 1 3.1498 -1.1382 0.5144 35 1 2.4604 -3.8061 -0.9343 36 1 4.0673 -3.0411 -0.9250 37 1 2.3813 -3.5797 -3.4122 38 1 3.7821 -4.5449 -2.8876 39 1 5.2598 -2.6032 -3.1195 40 1 4.3641 -2.8332 -4.6418 41 1 3.1609 0.6032 -7.2683 42 1 6.7532 -2.6537 -8.5190 43 1 5.4801 -3.9107 -8.3680 44 1 4.1635 -2.9531 -10.0807 45 1 5.7384 -2.2884 -10.6250 46 1 4.2940 -0.5911 -1.5393 47 1 2.8821 0.2574 -2.2172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661212607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:09 Heat of formation + Delta-G solvation = 75.833828 kcal Electronic energy + Delta-G solvation = -29619.973000 eV Core-core repulsion = 25614.526330 eV Total energy + Delta-G solvation = -4005.446670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 7.06 seconds Orbital eigenvalues (eV) -42.57527 -40.06165 -38.61848 -37.32379 -35.40540 -33.64864 -32.92102 -31.52147 -30.52947 -29.73086 -29.11387 -26.15472 -25.86627 -25.34431 -24.09743 -22.48413 -22.43793 -21.63633 -20.69700 -19.61160 -18.88359 -17.83124 -17.33188 -16.69229 -16.56599 -15.90417 -15.52256 -15.25236 -15.08193 -14.84053 -14.56775 -14.26398 -13.96395 -13.70689 -13.44184 -13.32149 -13.10247 -12.99792 -12.79734 -12.70809 -12.46107 -12.16943 -11.74982 -11.61097 -11.37096 -10.91501 -10.77655 -10.74619 -10.63243 -10.33857 -10.18383 -10.15774 -10.01951 -9.79572 -9.75176 -9.52138 -9.41927 -8.75117 -8.37164 -8.28291 -6.58842 -5.58111 -3.05303 1.12959 1.53574 1.93953 2.45613 3.23823 3.45358 3.50493 3.51586 3.56334 3.57239 4.06862 4.15657 4.43043 4.58802 4.62177 4.75589 4.91244 4.98050 5.08198 5.14698 5.25007 5.35274 5.48538 5.55772 5.59109 5.61920 5.86945 5.90437 5.90893 6.05526 6.21199 6.22284 6.24368 6.34580 6.41575 6.55959 6.57823 6.67645 6.85221 6.93542 6.98037 7.09040 7.23567 7.62929 7.68488 7.88233 7.98367 8.36525 8.55132 9.39737 10.01873 10.50665 11.46346 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015911 B = 0.003097 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.398713 B = 9039.603552 C =10221.696575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.605 5.605 3 C -0.248 4.248 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.912 5.912 7 Si 0.902 3.098 8 H -0.286 1.286 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.159 3.841 12 C -0.120 4.120 13 H 0.067 0.933 14 C -0.115 4.115 15 C -0.131 4.131 16 C 0.089 3.911 17 N -0.595 5.595 18 C 0.591 3.409 19 O -0.510 6.510 20 C 0.068 3.932 21 C -0.212 4.212 22 C 0.234 3.766 23 N -0.420 5.420 24 N -0.221 5.221 25 C 0.097 3.903 26 C 0.041 3.959 27 O -0.279 6.279 28 C 0.122 3.878 29 H 0.024 0.976 30 H 0.051 0.949 31 H -0.011 1.011 32 H 0.250 0.750 33 H 0.039 0.961 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.116 0.884 41 H 0.166 0.834 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.094 0.906 45 H 0.130 0.870 46 H 0.062 0.938 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.190 -16.409 -20.127 28.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.327 5.327 3 C -0.378 4.378 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.558 5.558 7 Si 0.732 3.268 8 H -0.213 1.213 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.031 3.969 12 C -0.142 4.142 13 H 0.085 0.915 14 C -0.153 4.153 15 C -0.169 4.169 16 C -0.035 4.035 17 N -0.327 5.327 18 C 0.375 3.625 19 O -0.383 6.383 20 C -0.098 4.098 21 C -0.241 4.241 22 C 0.066 3.934 23 N -0.216 5.216 24 N -0.051 5.051 25 C -0.023 4.023 26 C -0.035 4.035 27 O -0.186 6.186 28 C 0.002 3.998 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.008 0.992 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.133 0.867 41 H 0.184 0.816 42 H 0.122 0.878 43 H 0.130 0.870 44 H 0.112 0.888 45 H 0.147 0.853 46 H 0.080 0.920 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.415 -16.570 -19.634 28.114 hybrid contribution 0.233 1.229 -0.521 1.355 sum 11.649 -15.342 -20.155 27.880 Atomic orbital electron populations 1.20820 0.82529 0.95292 0.99050 1.43899 1.01943 1.00559 1.86342 1.19198 0.98309 0.86060 1.34226 0.91245 1.25081 0.96825 0.98589 0.98956 1.70076 1.12760 1.27262 1.45711 0.86287 0.79285 0.84070 0.77180 1.21346 1.21819 1.20545 1.20712 0.96108 0.88579 0.91537 1.22269 0.98197 0.92957 1.00800 0.91493 1.21587 1.00835 0.97412 0.95462 1.21893 0.99892 0.98053 0.97059 1.22359 0.96226 0.81244 1.03647 1.48114 1.62250 1.15289 1.07083 1.16940 0.79769 0.84442 0.81360 1.90887 1.40616 1.22411 1.84348 1.22181 0.98412 0.93919 0.95264 1.20111 1.10159 1.06600 0.87271 1.20760 0.96674 0.93095 0.82896 1.50994 1.41757 1.23344 1.05462 1.77647 1.21081 1.19577 0.86779 1.23226 0.98640 0.97672 0.82810 1.24447 1.00521 0.81710 0.96857 1.87150 1.84163 1.30833 1.16482 1.21970 0.98580 1.00182 0.79103 0.95742 0.93074 0.99244 0.93922 0.94266 0.93473 0.92046 0.92074 0.91947 0.91377 0.91719 0.86740 0.81615 0.87764 0.87004 0.88820 0.85258 0.91964 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.34 8.94 59.85 0.54 4.87 16 2 N -0.60 -15.50 2.82 -181.12 -0.51 -16.01 16 3 C -0.25 -6.93 8.31 -15.06 -0.13 -7.06 16 4 H 0.07 1.89 6.71 -52.48 -0.35 1.54 16 5 C 0.00 0.09 5.32 -17.43 -0.09 -0.01 16 6 N -0.91 -27.45 10.20 55.49 0.57 -26.88 16 7 Si 0.90 22.95 29.55 -169.99 -5.02 17.93 16 8 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 9 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 C 0.16 3.26 5.15 -4.04 -0.02 3.24 16 12 C -0.12 -2.14 2.55 -90.47 -0.23 -2.37 16 13 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 14 C -0.11 -1.57 5.17 -26.66 -0.14 -1.71 16 15 C -0.13 -1.60 6.08 -26.61 -0.16 -1.76 16 16 C 0.09 1.19 6.08 -3.71 -0.02 1.16 16 17 N -0.59 -10.10 2.97 -173.92 -0.52 -10.62 16 18 C 0.59 10.90 7.68 -12.38 -0.10 10.81 16 19 O -0.51 -11.38 16.33 5.30 0.09 -11.29 16 20 C 0.07 1.06 6.79 -82.97 -0.56 0.50 16 21 C -0.21 -3.02 10.61 -39.30 -0.42 -3.44 16 22 C 0.23 2.78 8.32 -16.54 -0.14 2.64 16 23 N -0.42 -4.53 5.01 -59.63 -0.30 -4.82 16 24 N -0.22 -2.97 9.17 33.31 0.31 -2.67 16 25 C 0.10 0.47 8.10 -2.67 -0.02 0.45 16 26 C 0.04 0.16 8.08 38.02 0.31 0.46 16 27 O -0.28 -2.59 11.19 -20.13 -0.23 -2.82 16 28 C 0.12 2.33 4.66 -3.70 -0.02 2.32 16 29 H 0.02 0.67 7.44 -51.93 -0.39 0.29 16 30 H 0.05 1.45 7.03 -51.93 -0.37 1.08 16 31 H -0.01 -0.25 8.03 -51.93 -0.42 -0.67 16 32 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 34 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 35 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.12 1.49 4.18 -71.45 -0.30 1.19 16 41 H 0.17 2.29 8.06 -52.48 -0.42 1.86 16 42 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.13 0.07 8.14 -51.93 -0.42 -0.36 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.12 2.75 5.39 -51.93 -0.28 2.47 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -35.40 371.24 -8.37 -43.77 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -7.14 Total: -2.29 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -1.20 Total: 10.10 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.46 Total: -61.01 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.14 Total: -14.11 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.40 -8.37 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661212607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.602 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.06 seconds