Wall clock time and date at job start Tue Mar 31 2020 17:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46891 * 111.00396 * 2 1 4 4 C 1.53001 * 109.47138 * 66.04789 * 3 2 1 5 5 N 1.46502 * 109.47116 * 180.02562 * 4 3 2 6 6 C 1.34782 * 119.99829 * 179.97438 * 5 4 3 7 7 O 1.21627 * 119.99984 * 0.02562 * 6 5 4 8 8 C 1.47257 * 119.99754 * 179.97438 * 6 5 4 9 9 C 1.36771 * 126.94716 * 0.02562 * 8 6 5 10 10 N 1.34653 * 108.40101 * 180.02562 * 9 8 6 11 11 H 0.97001 * 124.85459 * 180.02562 * 10 9 8 12 12 C 1.36455 * 110.29669 * 0.02562 * 10 9 8 13 13 C 1.34487 * 108.85650 * 0.26539 * 12 10 9 14 14 C 1.50692 * 126.83253 * 179.71465 * 13 12 10 15 15 C 1.52996 * 117.50118 * 8.76793 * 14 13 12 16 16 C 1.53009 * 117.50012 * 300.10856 * 14 13 12 17 17 C 1.46901 * 110.99890 * 236.04123 * 2 1 3 18 18 C 1.50701 * 109.47520 * 293.96205 * 17 2 1 19 19 O 1.21290 * 119.99729 * 359.97438 * 18 17 2 20 20 N 1.34776 * 119.99890 * 180.02562 * 18 17 2 21 21 C 1.37096 * 120.00138 * 179.97438 * 20 18 17 22 22 H 1.08009 * 119.99497 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00424 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99881 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00365 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46686 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47309 * 119.99397 * 25 23 21 28 28 H 1.48493 * 109.47097 * 240.00174 * 25 23 21 29 29 H 1.09001 * 109.47320 * 59.99929 * 1 2 3 30 30 H 1.08998 * 109.47470 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47055 * 300.00204 * 1 2 3 32 32 H 1.09006 * 109.47182 * 306.04748 * 3 2 1 33 33 H 1.08999 * 109.47486 * 186.04436 * 3 2 1 34 34 H 1.08998 * 109.47269 * 59.99636 * 4 3 2 35 35 H 1.08999 * 109.47096 * 299.99878 * 4 3 2 36 36 H 0.96997 * 119.99926 * 359.97438 * 5 4 3 37 37 H 1.07999 * 125.79337 * 0.02562 * 9 8 6 38 38 H 1.08002 * 125.56819 * 179.97438 * 12 10 9 39 39 H 1.08998 * 115.55169 * 154.44261 * 14 13 12 40 40 H 1.09003 * 117.50141 * 0.02562 * 15 14 13 41 41 H 1.09003 * 117.50013 * 145.01925 * 15 14 13 42 42 H 1.08992 * 117.49996 * 214.98134 * 16 14 13 43 43 H 1.09004 * 117.49676 * 0.02562 * 16 14 13 44 44 H 1.09003 * 109.46428 * 53.95845 * 17 2 1 45 45 H 1.08995 * 109.47351 * 173.95281 * 17 2 1 46 46 H 0.97005 * 120.00180 * 359.97438 * 20 18 17 47 47 H 0.96998 * 119.99861 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0573 1.3183 5 7 2.1562 3.4252 1.3180 6 6 1.9548 4.2244 2.3845 7 8 1.3379 3.8098 3.3473 8 6 2.4826 5.5991 2.3845 9 6 3.1915 6.2075 1.3855 10 7 3.4872 7.4614 1.7771 11 1 3.9854 8.1044 1.2485 12 6 2.9860 7.6986 3.0239 13 6 2.3605 6.5903 3.4590 14 6 1.6689 6.4049 4.7849 15 6 1.4858 7.6426 5.6654 16 6 2.5114 6.5736 6.0509 17 6 1.9954 -0.7661 -1.1375 18 6 1.6367 -2.2205 -0.9729 19 8 1.0052 -2.5833 -0.0030 20 7 2.0187 -3.1182 -1.9028 21 6 1.6929 -4.4414 -1.7527 22 1 1.1305 -4.7645 -0.8891 23 6 2.0862 -5.3669 -2.7116 24 7 2.7701 -4.9737 -3.7627 25 14 1.6416 -7.1697 -2.5076 26 1 0.8744 -7.3508 -1.2491 27 1 0.8143 -7.6090 -3.6598 28 1 2.8832 -7.9823 -2.4511 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.5611 1.9273 -0.8309 33 1 3.0797 1.3443 -0.1082 34 1 2.0658 1.5014 2.1492 35 1 0.5473 2.0845 1.4265 36 1 2.6484 3.7557 0.5504 37 1 3.4673 5.7584 0.4429 38 1 3.0806 8.6234 3.5736 39 1 0.8793 5.6537 4.8023 40 1 1.8653 8.5912 5.2855 41 1 0.5760 7.7055 6.2624 42 1 2.2759 5.9337 6.9012 43 1 3.5659 6.8191 5.9247 44 1 1.5610 -0.3873 -2.0627 45 1 3.0796 -0.6612 -1.1756 46 1 2.5241 -2.8281 -2.6782 47 1 3.0443 -5.6197 -4.4323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663309088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:12 Heat of formation + Delta-G solvation = 9.197213 kcal Electronic energy + Delta-G solvation = -27258.203668 eV Core-core repulsion = 23249.867417 eV Total energy + Delta-G solvation = -4008.336251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 9.49 seconds Orbital eigenvalues (eV) -41.59211 -39.25884 -38.54955 -37.23614 -36.69064 -34.50279 -33.77598 -31.40375 -31.22026 -29.93415 -28.75957 -27.61857 -25.35676 -24.12222 -23.47445 -22.73120 -22.50682 -21.18816 -19.90983 -19.22070 -19.13574 -18.72307 -17.83175 -16.53047 -16.04220 -15.93516 -15.71623 -15.51824 -15.01541 -14.64517 -14.60668 -14.52882 -14.35546 -14.17263 -13.81188 -13.55551 -13.42845 -13.10787 -12.89182 -12.59509 -12.10302 -11.88734 -11.76990 -11.75153 -11.50118 -11.36779 -11.24608 -11.03468 -10.99047 -10.92804 -10.55589 -10.32563 -10.20972 -9.88616 -9.47249 -9.14134 -8.81646 -8.55942 -8.45148 -7.96805 -7.86057 -6.40503 -3.81010 1.47417 1.99176 2.78964 3.09281 3.17679 3.28332 3.35971 3.41289 3.84459 3.92046 4.10025 4.30725 4.33779 4.61505 4.67838 4.74824 4.83486 4.89864 4.94264 5.02843 5.16693 5.24201 5.27469 5.39840 5.42937 5.44581 5.63734 5.67227 5.72845 5.75059 5.89714 5.91796 5.96036 5.97113 6.07796 6.11762 6.29170 6.37979 6.42612 6.54110 6.59998 7.02616 7.23827 7.36075 7.51199 7.57103 8.08336 8.29306 8.63499 9.20010 9.56035 10.08053 10.77383 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.030412 B = 0.001631 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.466401 B =17164.669746 C =17735.201991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.045 3.955 4 C 0.124 3.876 5 N -0.730 5.730 6 C 0.588 3.412 7 O -0.538 6.538 8 C -0.218 4.218 9 C 0.046 3.954 10 N -0.549 5.549 11 H 0.418 0.582 12 C -0.024 4.024 13 C -0.074 4.074 14 C -0.077 4.077 15 C -0.182 4.182 16 C -0.171 4.171 17 C 0.047 3.953 18 C 0.444 3.556 19 O -0.575 6.575 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.015 0.985 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.394 0.606 37 H 0.173 0.827 38 H 0.167 0.833 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.088 0.912 46 H 0.392 0.608 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.617 29.762 7.452 30.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.084 4.084 4 C 0.001 3.999 5 N -0.382 5.382 6 C 0.376 3.624 7 O -0.415 6.415 8 C -0.229 4.229 9 C -0.090 4.090 10 N -0.143 5.143 11 H 0.255 0.745 12 C -0.152 4.152 13 C -0.081 4.081 14 C -0.096 4.096 15 C -0.219 4.219 16 C -0.208 4.208 17 C -0.084 4.084 18 C 0.229 3.771 19 O -0.459 6.459 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.033 0.967 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.228 0.772 37 H 0.190 0.810 38 H 0.185 0.815 39 H 0.142 0.858 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.225 0.775 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.023 28.945 9.029 30.471 hybrid contribution 0.499 0.139 -2.046 2.111 sum 3.522 29.084 6.983 30.117 Atomic orbital electron populations 1.22627 0.86466 1.04705 0.99160 1.61433 1.08959 1.10513 1.43012 1.22253 1.00646 0.89715 0.95783 1.21299 0.99584 0.80624 0.98440 1.45771 1.58566 1.14318 1.19549 1.17342 0.79126 0.83790 0.82183 1.90767 1.41289 1.75333 1.34134 1.20335 1.10445 0.95249 0.96868 1.21927 1.01515 0.85704 0.99894 1.41445 1.44648 1.12604 1.15581 0.74524 1.21475 1.05452 1.00677 0.87560 1.19644 1.01706 0.92100 0.94608 1.20417 1.01646 1.00493 0.87054 1.23006 1.01407 0.93516 1.03976 1.22993 0.96878 1.02370 0.98594 1.21867 1.00655 0.94225 0.91671 1.19719 0.85465 0.86617 0.85255 1.90496 1.43784 1.80098 1.31528 1.41868 1.49503 1.07365 1.21475 1.19760 1.32775 0.82259 1.07883 0.87825 1.25254 0.96860 1.00562 0.95320 1.69621 1.38268 1.35630 1.10921 0.85801 0.78196 0.81944 0.78420 1.19201 1.20815 1.20779 0.96664 0.88417 0.91765 0.94662 0.90364 0.90269 0.91213 0.77235 0.81009 0.81544 0.85831 0.89142 0.88634 0.88599 0.89030 0.93396 0.89344 0.77527 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.96 60.06 0.54 0.84 16 2 N -0.51 -8.54 4.50 -244.38 -1.10 -9.64 16 3 C 0.04 0.54 5.07 -3.83 -0.02 0.53 16 4 C 0.12 1.56 5.60 -4.04 -0.02 1.54 16 5 N -0.73 -7.59 5.55 -61.43 -0.34 -7.94 16 6 C 0.59 7.56 7.81 -12.59 -0.10 7.46 16 7 O -0.54 -9.05 15.41 5.25 0.08 -8.97 16 8 C -0.22 -2.25 6.29 -103.35 -0.65 -2.90 16 9 C 0.05 0.29 11.40 -16.84 -0.19 0.10 16 10 N -0.55 -2.60 5.90 -12.85 -0.08 -2.68 16 11 H 0.42 0.50 8.96 -40.82 -0.37 0.13 16 12 C -0.02 -0.16 11.26 -16.82 -0.19 -0.35 16 13 C -0.07 -0.74 6.02 -102.54 -0.62 -1.36 16 14 C -0.08 -0.80 5.79 -91.77 -0.53 -1.33 16 15 C -0.18 -1.36 10.03 -26.70 -0.27 -1.62 16 16 C -0.17 -1.46 10.24 -26.69 -0.27 -1.74 16 17 C 0.05 0.83 5.45 -4.97 -0.03 0.80 16 18 C 0.44 10.45 7.47 -10.99 -0.08 10.37 16 19 O -0.58 -15.53 13.91 5.55 0.08 -15.46 16 20 N -0.57 -14.26 5.29 -10.96 -0.06 -14.32 16 21 C -0.30 -8.28 9.68 -14.94 -0.14 -8.43 16 22 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 25 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.10 1.96 5.82 -51.93 -0.30 1.66 16 31 H 0.06 0.97 6.47 -51.93 -0.34 0.63 16 32 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.08 0.85 7.93 -51.93 -0.41 0.43 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.07 0.96 6.55 -51.93 -0.34 0.62 16 36 H 0.39 2.75 7.42 -40.82 -0.30 2.44 16 37 H 0.17 0.49 7.45 -52.49 -0.39 0.10 16 38 H 0.17 0.69 7.16 -52.49 -0.38 0.32 16 39 H 0.12 1.57 7.02 -51.93 -0.36 1.21 16 40 H 0.09 0.53 7.00 -51.93 -0.36 0.16 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 45 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 46 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 391.08 15.07 5.89 5.89 Total: -1.00 -35.91 391.08 -9.25 -45.16 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -6.76 Total: 11.25 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -2.67 Total: 4.38 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.85 Total: -58.34 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: 0.16 Total: -24.42 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.91 -9.25 -45.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663309088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.355 kcal (2) G-P(sol) polarization free energy of solvation -35.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.49 seconds