Wall clock time and date at job start Tue Mar 31 2020 17:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46891 * 111.00396 * 2 1 4 4 C 1.53001 * 109.47138 * 66.04789 * 3 2 1 5 5 N 1.46502 * 109.47116 * 180.02562 * 4 3 2 6 6 C 1.34782 * 119.99829 * 179.97438 * 5 4 3 7 7 O 1.21627 * 119.99984 * 0.02562 * 6 5 4 8 8 C 1.47257 * 119.99754 * 179.97438 * 6 5 4 9 9 C 1.36771 * 126.94716 * 0.02562 * 8 6 5 10 10 N 1.34653 * 108.40101 * 180.02562 * 9 8 6 11 11 H 0.97001 * 124.85459 * 180.02562 * 10 9 8 12 12 C 1.36455 * 110.29669 * 0.02562 * 10 9 8 13 13 C 1.34487 * 108.85650 * 0.26539 * 12 10 9 14 14 C 1.50692 * 126.83253 * 179.71465 * 13 12 10 15 15 C 1.52996 * 117.50118 * 8.76793 * 14 13 12 16 16 C 1.53009 * 117.50012 * 300.10856 * 14 13 12 17 17 C 1.46901 * 110.99890 * 236.04123 * 2 1 3 18 18 C 1.50701 * 109.47520 * 293.96205 * 17 2 1 19 19 O 1.21290 * 119.99729 * 359.97438 * 18 17 2 20 20 N 1.34776 * 119.99890 * 180.02562 * 18 17 2 21 21 C 1.37096 * 120.00138 * 179.97438 * 20 18 17 22 22 H 1.08009 * 119.99497 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00424 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99881 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00365 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46686 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47309 * 119.99397 * 25 23 21 28 28 H 1.48493 * 109.47097 * 240.00174 * 25 23 21 29 29 H 1.09001 * 109.47320 * 59.99929 * 1 2 3 30 30 H 1.08998 * 109.47470 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47055 * 300.00204 * 1 2 3 32 32 H 1.09006 * 109.47182 * 306.04748 * 3 2 1 33 33 H 1.08999 * 109.47486 * 186.04436 * 3 2 1 34 34 H 1.08998 * 109.47269 * 59.99636 * 4 3 2 35 35 H 1.08999 * 109.47096 * 299.99878 * 4 3 2 36 36 H 0.96997 * 119.99926 * 359.97438 * 5 4 3 37 37 H 1.07999 * 125.79337 * 0.02562 * 9 8 6 38 38 H 1.08002 * 125.56819 * 179.97438 * 12 10 9 39 39 H 1.08998 * 115.55169 * 154.44261 * 14 13 12 40 40 H 1.09003 * 117.50141 * 0.02562 * 15 14 13 41 41 H 1.09003 * 117.50013 * 145.01925 * 15 14 13 42 42 H 1.08992 * 117.49996 * 214.98134 * 16 14 13 43 43 H 1.09004 * 117.49676 * 0.02562 * 16 14 13 44 44 H 1.09003 * 109.46428 * 53.95845 * 17 2 1 45 45 H 1.08995 * 109.47351 * 173.95281 * 17 2 1 46 46 H 0.97005 * 120.00180 * 359.97438 * 20 18 17 47 47 H 0.96998 * 119.99861 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0573 1.3183 5 7 2.1562 3.4252 1.3180 6 6 1.9548 4.2244 2.3845 7 8 1.3379 3.8098 3.3473 8 6 2.4826 5.5991 2.3845 9 6 3.1915 6.2075 1.3855 10 7 3.4872 7.4614 1.7771 11 1 3.9854 8.1044 1.2485 12 6 2.9860 7.6986 3.0239 13 6 2.3605 6.5903 3.4590 14 6 1.6689 6.4049 4.7849 15 6 1.4858 7.6426 5.6654 16 6 2.5114 6.5736 6.0509 17 6 1.9954 -0.7661 -1.1375 18 6 1.6367 -2.2205 -0.9729 19 8 1.0052 -2.5833 -0.0030 20 7 2.0187 -3.1182 -1.9028 21 6 1.6929 -4.4414 -1.7527 22 1 1.1305 -4.7645 -0.8891 23 6 2.0862 -5.3669 -2.7116 24 7 2.7701 -4.9737 -3.7627 25 14 1.6416 -7.1697 -2.5076 26 1 0.8744 -7.3508 -1.2491 27 1 0.8143 -7.6090 -3.6598 28 1 2.8832 -7.9823 -2.4511 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.5611 1.9273 -0.8309 33 1 3.0797 1.3443 -0.1082 34 1 2.0658 1.5014 2.1492 35 1 0.5473 2.0845 1.4265 36 1 2.6484 3.7557 0.5504 37 1 3.4673 5.7584 0.4429 38 1 3.0806 8.6234 3.5736 39 1 0.8793 5.6537 4.8023 40 1 1.8653 8.5912 5.2855 41 1 0.5760 7.7055 6.2624 42 1 2.2759 5.9337 6.9012 43 1 3.5659 6.8191 5.9247 44 1 1.5610 -0.3873 -2.0627 45 1 3.0796 -0.6612 -1.1756 46 1 2.5241 -2.8281 -2.6782 47 1 3.0443 -5.6197 -4.4323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663309088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:08 Heat of formation + Delta-G solvation = -18.970210 kcal Electronic energy + Delta-G solvation = -27259.425099 eV Core-core repulsion = 23249.867417 eV Total energy + Delta-G solvation = -4009.557682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.14402 -40.46698 -40.01906 -38.11754 -37.85403 -35.97690 -35.40521 -33.26206 -32.08598 -30.76269 -29.69139 -28.91874 -27.00497 -25.52629 -24.09508 -23.62586 -23.17078 -22.31527 -21.00041 -20.62436 -19.86843 -19.82521 -19.29240 -17.81891 -17.23899 -17.03833 -16.83970 -16.53128 -16.27479 -16.07292 -15.88255 -15.56485 -15.20048 -15.11467 -14.99288 -14.88272 -14.65266 -14.17293 -14.01757 -13.76944 -13.44893 -13.20745 -13.02336 -12.87363 -12.57702 -12.55497 -12.51774 -12.38111 -12.35299 -12.13340 -12.06807 -11.66624 -11.45184 -11.26559 -10.85497 -10.27302 -10.11203 -9.97550 -9.45231 -9.21663 -9.09026 -8.45129 -5.93098 0.81622 1.37250 1.42556 1.43514 1.56449 2.08236 2.08836 2.31983 2.45932 2.57329 2.97565 3.17771 3.22105 3.45034 3.78245 3.87101 4.00597 4.09204 4.16411 4.24480 4.27137 4.28541 4.33538 4.38363 4.48734 4.54892 4.61901 4.65641 4.68290 4.79352 4.83860 4.90684 4.98170 5.03446 5.17907 5.22640 5.28568 5.38392 5.43352 5.49493 5.76887 5.87547 5.97943 6.06708 6.19115 6.63523 6.67841 6.75974 7.15848 7.41679 7.59484 8.16240 8.72455 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.030412 B = 0.001631 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.466401 B =17164.669746 C =17735.201991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.541 5.541 3 C 0.055 3.945 4 C 0.133 3.867 5 N -0.713 5.713 6 C 0.581 3.419 7 O -0.594 6.594 8 C -0.268 4.268 9 C 0.076 3.924 10 N -0.530 5.530 11 H 0.440 0.560 12 C -0.010 4.010 13 C -0.112 4.112 14 C -0.103 4.103 15 C -0.159 4.159 16 C -0.175 4.175 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.616 6.616 20 N -0.574 5.574 21 C -0.331 4.331 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.276 1.276 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.414 0.586 37 H 0.212 0.788 38 H 0.196 0.804 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.116 0.884 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.564 32.613 5.401 33.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.266 5.266 3 C -0.073 4.073 4 C 0.008 3.992 5 N -0.366 5.366 6 C 0.371 3.629 7 O -0.476 6.476 8 C -0.279 4.279 9 C -0.062 4.062 10 N -0.125 5.125 11 H 0.281 0.719 12 C -0.138 4.138 13 C -0.118 4.118 14 C -0.122 4.122 15 C -0.196 4.196 16 C -0.212 4.212 17 C -0.070 4.070 18 C 0.227 3.773 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.461 4.461 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.201 1.201 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.252 0.748 37 H 0.228 0.772 38 H 0.212 0.788 39 H 0.101 0.899 40 H 0.134 0.866 41 H 0.116 0.884 42 H 0.106 0.894 43 H 0.119 0.881 44 H 0.092 0.908 45 H 0.134 0.866 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.022 31.859 6.913 32.985 hybrid contribution -0.106 -0.665 -1.376 1.532 sum 4.915 31.194 5.538 32.061 Atomic orbital electron populations 1.22453 0.86976 1.02329 1.00538 1.61309 1.08849 1.13291 1.43123 1.22235 1.01888 0.87269 0.95886 1.21029 0.98462 0.81625 0.98056 1.45519 1.58152 1.13078 1.19823 1.17892 0.78317 0.85004 0.81672 1.90734 1.43975 1.76605 1.36273 1.20297 1.13827 0.94447 0.99281 1.22374 0.98499 0.85593 0.99754 1.41497 1.43526 1.12499 1.15026 0.71931 1.21770 1.03692 1.00380 0.87955 1.19823 1.03638 0.93639 0.94664 1.20281 1.01750 1.01490 0.88698 1.23099 1.00966 0.93447 1.02091 1.23031 0.97549 1.03017 0.97599 1.21737 1.02388 0.89825 0.93044 1.20857 0.83667 0.88961 0.83836 1.90480 1.45189 1.81510 1.33068 1.41920 1.50124 1.06953 1.22218 1.19676 1.34293 0.84166 1.07971 0.90536 1.25985 0.96329 1.04146 0.94722 1.69670 1.38238 1.37017 1.11163 0.84899 0.78235 0.77191 0.78177 1.20053 1.19575 1.19627 0.94542 0.92551 0.91126 0.91865 0.88151 0.93149 0.92877 0.74833 0.77162 0.78757 0.89865 0.86645 0.88368 0.89358 0.88118 0.90814 0.86614 0.76916 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.83 8.96 127.69 1.14 1.97 16 2 N -0.54 -17.35 4.50 -927.07 -4.17 -21.52 16 3 C 0.05 1.19 5.07 86.31 0.44 1.63 16 4 C 0.13 3.33 5.60 86.38 0.48 3.81 16 5 N -0.71 -14.14 5.55 -466.52 -2.59 -16.73 16 6 C 0.58 15.39 7.81 86.61 0.68 16.07 16 7 O -0.59 -21.82 15.41 -4.12 -0.06 -21.88 16 8 C -0.27 -5.33 6.29 -19.04 -0.12 -5.45 16 9 C 0.08 0.69 11.40 83.92 0.96 1.65 16 10 N -0.53 -2.85 5.90 -194.55 -1.15 -4.00 16 11 H 0.44 -1.17 8.96 -92.71 -0.83 -2.00 16 12 C -0.01 -0.10 11.26 83.12 0.94 0.83 16 13 C -0.11 -2.16 6.02 -18.51 -0.11 -2.28 16 14 C -0.10 -2.27 5.79 -11.54 -0.07 -2.33 16 15 C -0.16 -2.27 10.03 30.62 0.31 -1.96 16 16 C -0.17 -3.07 10.24 30.62 0.31 -2.76 16 17 C 0.06 2.03 5.45 85.56 0.47 2.50 16 18 C 0.44 20.92 7.47 87.66 0.66 21.57 16 19 O -0.62 -34.59 13.91 -3.06 -0.04 -34.64 16 20 N -0.57 -29.38 5.29 -306.98 -1.62 -31.00 16 21 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 22 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.65 5.50 84.92 0.47 -0.19 16 24 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 25 Si 0.99 43.32 29.55 68.60 2.03 45.34 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 30 H 0.06 2.35 5.82 -2.39 -0.01 2.33 16 31 H 0.07 2.19 6.47 -2.38 -0.02 2.18 16 32 H 0.06 1.09 8.12 -2.38 -0.02 1.07 16 33 H 0.10 1.78 7.93 -2.39 -0.02 1.76 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.51 6.55 -2.39 -0.02 1.49 16 36 H 0.41 4.53 7.42 -92.71 -0.69 3.84 16 37 H 0.21 0.09 7.45 -2.91 -0.02 0.07 16 38 H 0.20 0.81 7.16 -2.91 -0.02 0.79 16 39 H 0.08 2.45 7.02 -2.39 -0.02 2.43 16 40 H 0.12 1.03 7.00 -2.39 -0.02 1.02 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 45 H 0.12 3.25 7.93 -2.39 -0.02 3.24 16 46 H 0.40 19.05 7.90 -92.70 -0.73 18.31 16 47 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -84.83 391.08 -1.18 -86.01 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: -1.22 Total: 30.58 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 7.36 Total: 16.95 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -9.25 Total: -122.36 kcal Atomic # 8 Polarization: -56.41 SS G_CDS: -0.11 Total: -56.52 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -84.83 -1.18 -86.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663309088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.037 kcal (2) G-P(sol) polarization free energy of solvation -84.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds