Wall clock time and date at job start Tue Mar 31 2020 17:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99724 * 2 1 4 4 H 1.48497 * 109.47116 * 269.99679 * 3 2 1 5 5 H 1.48497 * 109.46987 * 29.99695 * 3 2 1 6 6 H 1.48503 * 109.46843 * 149.99623 * 3 2 1 7 7 C 1.38813 * 120.00455 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00082 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99678 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64952 * 13.06765 * 9 7 2 11 11 C 1.54911 * 104.83113 * 155.90889 * 10 9 7 12 12 C 1.55154 * 101.58274 * 37.00806 * 11 10 9 13 13 C 1.47022 * 125.64621 * 193.11181 * 9 7 2 14 14 H 1.09000 * 109.88269 * 300.43585 * 13 9 7 15 15 C 1.52996 * 109.88674 * 61.60519 * 13 9 7 16 16 H 1.09004 * 109.49663 * 297.21302 * 15 13 9 17 17 C 1.53040 * 109.50079 * 177.11136 * 15 13 9 18 18 C 1.53042 * 109.53860 * 178.68186 * 17 15 13 19 19 C 1.53193 * 109.30948 * 61.36767 * 18 17 15 20 20 N 1.46928 * 108.77894 * 305.36350 * 19 18 17 21 21 C 1.34779 * 120.63202 * 233.59122 * 20 19 18 22 22 O 1.21285 * 119.99893 * 180.02562 * 21 20 19 23 23 C 1.50693 * 120.00037 * 0.02562 * 21 20 19 24 24 N 1.46500 * 109.47272 * 180.02562 * 23 21 20 25 25 C 1.34598 * 126.43766 * 124.99861 * 24 23 21 26 26 N 1.31072 * 106.68023 * 180.02562 * 25 24 23 27 27 N 1.28850 * 107.99050 * 359.97438 * 26 25 24 28 28 N 1.28741 * 109.39100 * 359.73678 * 27 26 25 29 29 C 1.46928 * 118.73826 * 53.60438 * 20 19 18 30 30 H 0.96996 * 120.00014 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.36876 * 274.74403 * 10 9 7 32 32 H 1.09002 * 110.36693 * 36.96260 * 10 9 7 33 33 H 1.09004 * 111.00553 * 155.08740 * 11 10 9 34 34 H 1.09003 * 111.00287 * 278.93602 * 11 10 9 35 35 H 1.08999 * 110.72116 * 206.13376 * 12 11 10 36 36 H 1.08995 * 110.71509 * 82.86423 * 12 11 10 37 37 H 1.09000 * 109.45781 * 298.70500 * 17 15 13 38 38 H 1.08999 * 109.45917 * 58.66580 * 17 15 13 39 39 H 1.08996 * 109.49711 * 301.41925 * 18 17 15 40 40 H 1.08997 * 109.52329 * 181.32843 * 18 17 15 41 41 H 1.09000 * 109.58885 * 185.57758 * 19 18 17 42 42 H 1.08995 * 109.59224 * 65.14991 * 19 18 17 43 43 H 1.08998 * 109.47175 * 300.00105 * 23 21 20 44 44 H 1.08997 * 109.47493 * 59.99841 * 23 21 20 45 45 H 1.07994 * 126.66293 * 359.96181 * 25 24 23 46 46 H 1.09003 * 109.58779 * 186.60528 * 29 20 19 47 47 H 1.09002 * 109.69909 * 66.25765 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1144 -2.5488 -0.2708 11 6 -0.2652 -4.0113 -0.7587 12 6 0.7678 -4.7462 0.1359 13 6 1.9049 -3.7118 0.2721 14 1 2.6911 -3.9279 -0.4513 15 6 2.4751 -3.7492 1.6913 16 1 3.2844 -3.0241 1.7775 17 6 3.0106 -5.1514 1.9900 18 6 3.6109 -5.1810 3.3975 19 6 2.5192 -4.8523 4.4207 20 7 1.8992 -3.5712 4.0560 21 6 1.8168 -2.5682 4.9525 22 8 1.3023 -1.5155 4.6393 23 6 2.3640 -2.7548 6.3442 24 7 2.1537 -1.5299 7.1199 25 6 1.5215 -1.4323 8.3041 26 7 1.5557 -0.1673 8.6457 27 7 2.1769 0.4783 7.7197 28 7 2.5448 -0.3431 6.7990 29 6 1.3706 -3.4042 2.6953 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6920 -2.3913 0.6400 32 1 -0.4341 -1.8534 -1.0470 33 1 -1.2739 -4.3821 -0.5763 34 1 -0.0025 -4.1006 -1.8129 35 1 1.1266 -5.6517 -0.3534 36 1 0.3382 -4.9776 1.1105 37 1 2.1955 -5.8723 1.9275 38 1 3.7797 -5.4090 1.2618 39 1 4.4096 -4.4428 3.4679 40 1 4.0133 -6.1733 3.6010 41 1 2.9609 -4.7747 5.4142 42 1 1.7641 -5.6383 4.4148 43 1 1.8490 -3.5842 6.8289 44 1 3.4307 -2.9718 6.2892 45 1 1.0723 -2.2393 8.8638 46 1 1.0545 -2.3712 2.5503 47 1 0.5208 -4.0705 2.5470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963264607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:29 Heat of formation + Delta-G solvation = 122.391345 kcal Electronic energy + Delta-G solvation = -30484.620075 eV Core-core repulsion = 26513.485041 eV Total energy + Delta-G solvation = -3971.135034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.18305 -40.35301 -38.46216 -36.61238 -35.46484 -33.24083 -32.46463 -32.30538 -31.24764 -29.53545 -29.20905 -26.73289 -25.38379 -24.51214 -23.85829 -23.36396 -22.76069 -21.28024 -20.23843 -19.48201 -18.48345 -18.04072 -17.53025 -16.75348 -16.42894 -16.15909 -15.72021 -15.52645 -14.88138 -14.57847 -14.29844 -14.19454 -13.82715 -13.69994 -13.25962 -13.19574 -12.95569 -12.55368 -12.23127 -12.14322 -11.98866 -11.75525 -11.62355 -11.33946 -11.20920 -11.16016 -11.06781 -10.91113 -10.80813 -10.68296 -10.42005 -10.23175 -10.03738 -9.89231 -9.87856 -9.75176 -9.61884 -9.54589 -8.53801 -8.48139 -6.74400 -5.67529 -3.03110 1.19685 1.73850 2.26889 2.43695 2.90598 3.47293 3.55221 3.56848 3.88735 4.07754 4.12328 4.40866 4.54970 4.58588 4.70324 4.81168 4.94142 5.20164 5.27936 5.32055 5.35331 5.51976 5.54976 5.58623 5.62516 5.67146 5.75652 5.85598 5.86564 5.95086 5.98733 6.06361 6.11577 6.26299 6.32363 6.44319 6.55291 6.63863 6.73330 6.74345 6.92482 7.03415 7.37662 7.57458 7.65568 7.86274 8.08348 8.34480 8.60486 9.26511 9.88137 10.54226 11.44014 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.009825 B = 0.004711 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.057966 B = 5942.426700 C = 7894.635514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.072 0.928 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.151 4.151 12 C -0.128 4.128 13 C 0.168 3.832 14 H 0.035 0.965 15 C -0.106 4.106 16 H 0.071 0.929 17 C -0.116 4.116 18 C -0.134 4.134 19 C 0.104 3.896 20 N -0.604 5.604 21 C 0.494 3.506 22 O -0.493 6.493 23 C 0.096 3.904 24 N -0.299 5.299 25 C 0.154 3.846 26 N -0.309 5.309 27 N -0.080 5.080 28 N -0.055 5.055 29 C 0.126 3.874 30 H 0.253 0.747 31 H 0.022 0.978 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.139 0.861 44 H 0.132 0.868 45 H 0.234 0.766 46 H 0.115 0.885 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 -18.405 12.077 22.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.194 4.194 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.090 0.910 9 N -0.317 5.317 10 C 0.047 3.953 11 C -0.189 4.189 12 C -0.166 4.166 13 C 0.060 3.940 14 H 0.053 0.947 15 C -0.128 4.128 16 H 0.090 0.910 17 C -0.154 4.154 18 C -0.173 4.173 19 C -0.020 4.020 20 N -0.339 5.339 21 C 0.277 3.723 22 O -0.365 6.365 23 C -0.030 4.030 24 N -0.101 5.101 25 C -0.144 4.144 26 N -0.156 5.156 27 N -0.074 5.074 28 N -0.042 5.042 29 C 0.006 3.994 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.250 0.750 46 H 0.133 0.867 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.374 -16.175 11.722 20.449 hybrid contribution 0.309 -0.379 0.106 0.501 sum 4.683 -16.554 11.827 20.878 Atomic orbital electron populations 1.69901 1.04950 1.25165 1.56044 1.24803 0.95583 0.97637 1.01404 0.86223 0.79002 0.83943 0.77225 1.21742 1.21573 1.20630 1.18853 0.90139 0.82216 1.44614 0.91025 1.44509 1.05205 1.00798 1.81198 1.21449 0.85018 0.90120 0.98738 1.23029 0.97289 0.99821 0.98788 1.22665 0.97171 0.97245 0.99491 1.20900 0.93992 0.87271 0.91858 0.94717 1.21972 0.98196 0.95219 0.97391 0.91031 1.21619 1.00296 0.98143 0.95352 1.21918 0.97753 1.01680 0.95922 1.21800 0.96059 0.85905 0.98203 1.48174 1.59261 1.12944 1.13522 1.20031 0.81402 0.84870 0.85973 1.90950 1.42261 1.25277 1.78020 1.22098 1.05767 0.82841 0.92297 1.48211 1.37327 1.08652 1.15941 1.27674 1.00088 0.98827 0.87842 1.74963 1.16819 1.01700 1.22137 1.78701 1.10605 1.21816 0.96295 1.79107 1.17367 0.87516 1.20177 1.21834 0.95124 1.05527 0.76901 0.93716 0.95995 0.90915 0.92613 0.92434 0.92532 0.91813 0.91854 0.91864 0.91492 0.90975 0.90739 0.90882 0.84337 0.85024 0.75020 0.86663 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.32 10.51 55.49 0.58 -26.74 16 2 C 0.00 0.09 5.47 -17.43 -0.10 -0.01 16 3 Si 0.91 23.41 29.55 -169.99 -5.02 18.38 16 4 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.23 -6.31 9.87 -15.06 -0.15 -6.46 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 9 N -0.59 -14.30 2.39 -162.57 -0.39 -14.69 16 10 C 0.17 4.04 5.44 -2.53 -0.01 4.02 16 11 C -0.15 -2.71 7.08 -24.58 -0.17 -2.88 16 12 C -0.13 -2.01 5.20 -24.90 -0.13 -2.14 16 13 C 0.17 3.15 2.96 -66.95 -0.20 2.95 16 14 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 15 C -0.11 -1.73 2.10 -90.50 -0.19 -1.92 16 16 H 0.07 1.38 8.06 -51.93 -0.42 0.96 16 17 C -0.12 -1.31 4.89 -26.69 -0.13 -1.44 16 18 C -0.13 -1.14 6.08 -26.61 -0.16 -1.30 16 19 C 0.10 0.79 6.34 -3.71 -0.02 0.76 16 20 N -0.60 -7.86 2.97 -172.76 -0.51 -8.37 16 21 C 0.49 7.18 7.72 -10.99 -0.08 7.09 16 22 O -0.49 -10.56 15.12 5.55 0.08 -10.47 16 23 C 0.10 0.81 5.31 -5.20 -0.03 0.78 16 24 N -0.30 -3.71 3.19 -63.74 -0.20 -3.91 16 25 C 0.15 1.59 12.79 -90.39 -1.16 0.43 16 26 N -0.31 -4.63 12.36 29.59 0.37 -4.26 16 27 N -0.08 -1.45 13.43 60.35 0.81 -0.64 16 28 N -0.06 -0.97 12.30 60.35 0.74 -0.22 16 29 C 0.13 2.17 5.28 -3.71 -0.02 2.15 16 30 H 0.25 7.46 8.31 -40.82 -0.34 7.13 16 31 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.07 1.95 6.81 -51.93 -0.35 1.60 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.94 5.43 -51.93 -0.28 0.65 16 37 H 0.06 0.66 7.05 -51.93 -0.37 0.29 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.30 5.93 -51.93 -0.31 -0.01 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.14 0.41 7.88 -51.93 -0.41 0.00 16 44 H 0.13 0.76 7.69 -51.93 -0.40 0.36 16 45 H 0.23 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 2.72 6.62 -51.93 -0.34 2.38 16 47 H 0.06 1.03 5.97 -51.93 -0.31 0.72 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -38.48 368.55 -7.50 -45.99 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.96 Total: -2.66 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.55 Total: 2.04 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 1.40 Total: -58.83 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.02 Total: 18.38 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.48 -7.50 -45.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963264607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.378 kcal (2) G-P(sol) polarization free energy of solvation -38.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds