Wall clock time and date at job start Tue Mar 31 2020 17:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99724 * 2 1 4 4 H 1.48497 * 109.47116 * 269.99679 * 3 2 1 5 5 H 1.48497 * 109.46987 * 29.99695 * 3 2 1 6 6 H 1.48503 * 109.46843 * 149.99623 * 3 2 1 7 7 C 1.38813 * 120.00455 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00082 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99678 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64952 * 13.06765 * 9 7 2 11 11 C 1.54911 * 104.83113 * 155.90889 * 10 9 7 12 12 C 1.55154 * 101.58274 * 37.00806 * 11 10 9 13 13 C 1.47022 * 125.64621 * 193.11181 * 9 7 2 14 14 H 1.09000 * 109.88269 * 300.43585 * 13 9 7 15 15 C 1.52996 * 109.88674 * 61.60519 * 13 9 7 16 16 H 1.09004 * 109.49663 * 297.21302 * 15 13 9 17 17 C 1.53040 * 109.50079 * 177.11136 * 15 13 9 18 18 C 1.53042 * 109.53860 * 178.68186 * 17 15 13 19 19 C 1.53193 * 109.30948 * 61.36767 * 18 17 15 20 20 N 1.46928 * 108.77894 * 305.36350 * 19 18 17 21 21 C 1.34779 * 120.63202 * 233.59122 * 20 19 18 22 22 O 1.21285 * 119.99893 * 180.02562 * 21 20 19 23 23 C 1.50693 * 120.00037 * 0.02562 * 21 20 19 24 24 N 1.46500 * 109.47272 * 180.02562 * 23 21 20 25 25 C 1.34598 * 126.43766 * 124.99861 * 24 23 21 26 26 N 1.31072 * 106.68023 * 180.02562 * 25 24 23 27 27 N 1.28850 * 107.99050 * 359.97438 * 26 25 24 28 28 N 1.28741 * 109.39100 * 359.73678 * 27 26 25 29 29 C 1.46928 * 118.73826 * 53.60438 * 20 19 18 30 30 H 0.96996 * 120.00014 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.36876 * 274.74403 * 10 9 7 32 32 H 1.09002 * 110.36693 * 36.96260 * 10 9 7 33 33 H 1.09004 * 111.00553 * 155.08740 * 11 10 9 34 34 H 1.09003 * 111.00287 * 278.93602 * 11 10 9 35 35 H 1.08999 * 110.72116 * 206.13376 * 12 11 10 36 36 H 1.08995 * 110.71509 * 82.86423 * 12 11 10 37 37 H 1.09000 * 109.45781 * 298.70500 * 17 15 13 38 38 H 1.08999 * 109.45917 * 58.66580 * 17 15 13 39 39 H 1.08996 * 109.49711 * 301.41925 * 18 17 15 40 40 H 1.08997 * 109.52329 * 181.32843 * 18 17 15 41 41 H 1.09000 * 109.58885 * 185.57758 * 19 18 17 42 42 H 1.08995 * 109.59224 * 65.14991 * 19 18 17 43 43 H 1.08998 * 109.47175 * 300.00105 * 23 21 20 44 44 H 1.08997 * 109.47493 * 59.99841 * 23 21 20 45 45 H 1.07994 * 126.66293 * 359.96181 * 25 24 23 46 46 H 1.09003 * 109.58779 * 186.60528 * 29 20 19 47 47 H 1.09002 * 109.69909 * 66.25765 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1144 -2.5488 -0.2708 11 6 -0.2652 -4.0113 -0.7587 12 6 0.7678 -4.7462 0.1359 13 6 1.9049 -3.7118 0.2721 14 1 2.6911 -3.9279 -0.4513 15 6 2.4751 -3.7492 1.6913 16 1 3.2844 -3.0241 1.7775 17 6 3.0106 -5.1514 1.9900 18 6 3.6109 -5.1810 3.3975 19 6 2.5192 -4.8523 4.4207 20 7 1.8992 -3.5712 4.0560 21 6 1.8168 -2.5682 4.9525 22 8 1.3023 -1.5155 4.6393 23 6 2.3640 -2.7548 6.3442 24 7 2.1537 -1.5299 7.1199 25 6 1.5215 -1.4323 8.3041 26 7 1.5557 -0.1673 8.6457 27 7 2.1769 0.4783 7.7197 28 7 2.5448 -0.3431 6.7990 29 6 1.3706 -3.4042 2.6953 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6920 -2.3913 0.6400 32 1 -0.4341 -1.8534 -1.0470 33 1 -1.2739 -4.3821 -0.5763 34 1 -0.0025 -4.1006 -1.8129 35 1 1.1266 -5.6517 -0.3534 36 1 0.3382 -4.9776 1.1105 37 1 2.1955 -5.8723 1.9275 38 1 3.7797 -5.4090 1.2618 39 1 4.4096 -4.4428 3.4679 40 1 4.0133 -6.1733 3.6010 41 1 2.9609 -4.7747 5.4142 42 1 1.7641 -5.6383 4.4148 43 1 1.8490 -3.5842 6.8289 44 1 3.4307 -2.9718 6.2892 45 1 1.0723 -2.2393 8.8638 46 1 1.0545 -2.3712 2.5503 47 1 0.5208 -4.0705 2.5470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963264607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:28 Heat of formation + Delta-G solvation = 93.415671 kcal Electronic energy + Delta-G solvation = -30485.876555 eV Core-core repulsion = 26513.485041 eV Total energy + Delta-G solvation = -3972.391513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.18788 -41.46487 -39.86389 -37.88738 -36.46783 -34.81806 -33.93775 -33.45812 -32.31535 -31.20201 -30.41122 -28.13347 -26.51862 -26.36375 -24.85875 -24.42352 -23.88804 -22.41824 -21.86760 -20.78028 -19.73764 -18.93103 -18.74900 -18.36355 -17.55815 -17.19466 -16.93100 -16.71451 -16.46796 -15.86595 -15.75137 -15.53162 -15.11991 -14.70699 -14.32096 -14.25767 -14.07915 -13.92479 -13.71850 -13.55252 -13.16210 -13.13760 -12.99266 -12.93784 -12.75333 -12.69861 -12.22344 -12.16461 -12.15436 -11.99056 -11.81568 -11.74491 -11.55231 -11.47130 -11.34728 -11.14997 -11.10424 -10.85740 -10.67321 -9.61051 -8.78555 -7.90147 -5.22343 0.25646 0.97967 1.23844 1.31330 1.37647 1.41863 1.42257 1.94485 2.42993 3.11184 3.30661 3.44388 3.49009 3.64112 3.86508 3.92912 3.94974 3.98095 4.13875 4.16001 4.20986 4.29743 4.33884 4.36444 4.44245 4.58973 4.69420 4.71674 4.80106 4.87116 4.94850 5.00571 5.06896 5.07557 5.18244 5.22441 5.24880 5.36054 5.40373 5.45832 5.54094 5.63896 5.65007 5.67947 5.80409 6.24189 6.35876 7.06712 7.10232 7.55802 7.81193 8.45229 9.20400 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.009825 B = 0.004711 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.057966 B = 5942.426700 C = 7894.635514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.058 4.058 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.305 1.305 6 H -0.278 1.278 7 C -0.219 4.219 8 H 0.068 0.932 9 N -0.612 5.612 10 C 0.177 3.823 11 C -0.137 4.137 12 C -0.110 4.110 13 C 0.154 3.846 14 H 0.033 0.967 15 C -0.095 4.095 16 H 0.027 0.973 17 C -0.109 4.109 18 C -0.132 4.132 19 C 0.094 3.906 20 N -0.600 5.600 21 C 0.481 3.519 22 O -0.582 6.582 23 C 0.101 3.899 24 N -0.299 5.299 25 C 0.186 3.814 26 N -0.347 5.347 27 N -0.123 5.123 28 N -0.105 5.105 29 C 0.139 3.861 30 H 0.242 0.758 31 H -0.014 1.014 32 H 0.028 0.972 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.115 0.885 41 H 0.126 0.874 42 H 0.102 0.898 43 H 0.212 0.788 44 H 0.168 0.832 45 H 0.303 0.697 46 H 0.036 0.964 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.708 -24.589 14.357 29.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.232 1.232 6 H -0.204 1.204 7 C -0.349 4.349 8 H 0.086 0.914 9 N -0.336 5.336 10 C 0.051 3.949 11 C -0.176 4.176 12 C -0.148 4.148 13 C 0.048 3.952 14 H 0.051 0.949 15 C -0.116 4.116 16 H 0.046 0.954 17 C -0.147 4.147 18 C -0.170 4.170 19 C -0.026 4.026 20 N -0.333 5.333 21 C 0.267 3.733 22 O -0.460 6.460 23 C -0.022 4.022 24 N -0.102 5.102 25 C -0.112 4.112 26 N -0.195 5.195 27 N -0.117 5.117 28 N -0.092 5.092 29 C 0.016 3.984 30 H 0.051 0.949 31 H 0.004 0.996 32 H 0.047 0.953 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.134 0.866 41 H 0.143 0.857 42 H 0.120 0.880 43 H 0.229 0.771 44 H 0.185 0.815 45 H 0.318 0.682 46 H 0.055 0.945 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.749 -22.466 13.999 27.087 hybrid contribution -0.084 1.389 -0.618 1.523 sum 5.665 -21.077 13.380 25.600 Atomic orbital electron populations 1.70106 1.05991 1.24616 1.58551 1.25441 0.96299 1.00326 1.03096 0.85431 0.77726 0.80878 0.77545 1.20281 1.23203 1.20382 1.19075 0.90207 0.83872 1.41728 0.91382 1.44726 1.05581 1.01954 1.81333 1.21193 0.84449 0.93354 0.95868 1.22886 0.99749 0.95530 0.99402 1.22641 0.94743 0.97181 1.00188 1.21249 0.95223 0.85407 0.93328 0.94924 1.21753 0.96363 0.98016 0.95489 0.95435 1.21593 1.01182 0.94081 0.97862 1.21949 0.97434 1.03689 0.93922 1.22361 0.96505 0.83370 1.00399 1.48281 1.58527 1.14994 1.11504 1.21187 0.80046 0.83618 0.88403 1.90933 1.46252 1.28794 1.80052 1.22639 1.08428 0.82915 0.88205 1.48480 1.36750 1.08241 1.16715 1.28880 0.96910 0.98745 0.86647 1.74836 1.17999 1.04103 1.22535 1.78656 1.12268 1.23423 0.97352 1.79018 1.19348 0.89740 1.21082 1.21293 0.95921 1.00981 0.80170 0.94910 0.99612 0.95335 0.90045 0.91880 0.88323 0.90226 0.89543 0.91347 0.93050 0.86637 0.85654 0.87975 0.77082 0.81476 0.68196 0.94509 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.24 10.51 21.65 0.23 -61.01 16 2 C -0.06 -3.59 5.47 84.86 0.46 -3.12 16 3 Si 0.95 51.40 29.55 68.60 2.03 53.42 16 4 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 5 H -0.30 -17.05 7.11 99.48 0.71 -16.34 16 6 H -0.28 -14.66 7.11 99.48 0.71 -13.95 16 7 C -0.22 -12.84 9.87 84.03 0.83 -12.01 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.61 -31.15 2.39 -668.26 -1.60 -32.75 16 10 C 0.18 8.82 5.44 86.86 0.47 9.29 16 11 C -0.14 -4.78 7.08 31.99 0.23 -4.56 16 12 C -0.11 -3.13 5.20 31.78 0.17 -2.97 16 13 C 0.15 5.75 2.96 45.34 0.13 5.89 16 14 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 15 C -0.09 -3.06 2.10 -10.72 -0.02 -3.08 16 16 H 0.03 1.11 8.06 -2.39 -0.02 1.09 16 17 C -0.11 -2.02 4.89 30.62 0.15 -1.87 16 18 C -0.13 -1.49 6.08 30.67 0.19 -1.31 16 19 C 0.09 0.84 6.34 86.36 0.55 1.39 16 20 N -0.60 -14.37 2.97 -818.89 -2.43 -16.80 16 21 C 0.48 13.53 7.72 87.65 0.68 14.20 16 22 O -0.58 -26.67 15.12 -3.04 -0.05 -26.72 16 23 C 0.10 1.23 5.31 85.63 0.45 1.69 16 24 N -0.30 -6.76 3.19 -355.59 -1.13 -7.89 16 25 C 0.19 3.20 12.79 180.27 2.31 5.51 16 26 N -0.35 -10.23 12.36 -60.30 -0.75 -10.98 16 27 N -0.12 -4.62 13.43 37.01 0.50 -4.13 16 28 N -0.10 -3.77 12.30 37.02 0.46 -3.31 16 29 C 0.14 4.84 5.28 86.36 0.46 5.29 16 30 H 0.24 15.55 8.31 -92.71 -0.77 14.78 16 31 H -0.01 -0.79 8.09 -2.39 -0.02 -0.81 16 32 H 0.03 1.64 6.81 -2.39 -0.02 1.63 16 33 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.08 2.04 5.43 -2.39 -0.01 2.02 16 37 H 0.09 1.26 7.05 -2.39 -0.02 1.24 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.13 -0.09 5.93 -2.39 -0.01 -0.10 16 42 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.21 -0.57 7.88 -2.39 -0.02 -0.59 16 44 H 0.17 0.92 7.69 -2.39 -0.02 0.91 16 45 H 0.30 0.17 8.06 -2.91 -0.02 0.15 16 46 H 0.04 1.89 6.62 -2.39 -0.02 1.87 16 47 H 0.07 2.33 5.97 -2.39 -0.01 2.31 16 Total: -1.00 -105.66 368.55 5.28 -100.38 By element: Atomic # 1 Polarization: -5.54 SS G_CDS: 0.98 Total: -4.56 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 7.05 Total: 14.35 kcal Atomic # 7 Polarization: -132.14 SS G_CDS: -4.73 Total: -136.87 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.05 Total: -26.72 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.03 Total: 53.42 kcal Total: -105.66 5.28 -100.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963264607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.797 kcal (2) G-P(sol) polarization free energy of solvation -105.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds