Wall clock time and date at job start Tue Mar 31 2020 17:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38268 * 119.97566 * 2 1 4 4 C 1.38179 * 120.02862 * 179.97438 * 3 2 1 5 5 C 1.38483 * 119.97096 * 359.79062 * 4 3 2 6 6 F 1.35101 * 120.02378 * 180.25347 * 5 4 3 7 7 C 1.38437 * 119.94599 * 0.48556 * 5 4 3 8 8 C 1.50706 * 120.00617 * 179.76526 * 7 5 4 9 9 C 1.50693 * 109.47442 * 279.72407 * 8 7 5 10 10 O 1.21285 * 119.99926 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00317 * 180.02562 * 9 8 7 12 12 C 1.46930 * 120.62835 * 359.71498 * 11 9 8 13 13 C 1.53626 * 108.54000 * 126.36826 * 12 11 9 14 14 C 1.53043 * 109.24104 * 54.86460 * 13 12 11 15 15 N 1.46489 * 109.46305 * 178.48868 * 14 13 12 16 16 C 1.46507 * 120.00277 * 60.06440 * 15 14 13 17 17 C 1.36942 * 120.00185 * 240.06268 * 15 14 13 18 18 H 1.07995 * 119.99413 * 22.99155 * 17 15 14 19 19 C 1.38810 * 120.00356 * 202.98796 * 17 15 14 20 20 N 1.31618 * 119.99973 * 11.64909 * 19 17 15 21 21 Si 1.86796 * 120.00058 * 191.64816 * 19 17 15 22 22 H 1.48502 * 109.46993 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47114 * 120.00064 * 21 19 17 24 24 H 1.48496 * 109.47345 * 240.00233 * 21 19 17 25 25 C 1.53045 * 109.53340 * 298.50857 * 14 13 12 26 26 C 1.46926 * 120.63561 * 180.02562 * 11 9 8 27 27 C 1.38220 * 119.97370 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47547 * 269.97474 * 1 2 3 29 29 H 1.09003 * 109.46870 * 29.97837 * 1 2 3 30 30 H 1.09008 * 109.46904 * 149.97451 * 1 2 3 31 31 H 1.08004 * 119.98366 * 359.97438 * 3 2 1 32 32 H 1.07991 * 120.01191 * 180.02562 * 4 3 2 33 33 H 1.09006 * 109.46619 * 159.72283 * 8 7 5 34 34 H 1.08997 * 109.47058 * 39.73089 * 8 7 5 35 35 H 1.09001 * 109.59182 * 246.20660 * 12 11 9 36 36 H 1.09006 * 109.58309 * 6.63591 * 12 11 9 37 37 H 1.08993 * 109.63636 * 294.86890 * 13 12 11 38 38 H 1.09006 * 109.45877 * 174.73930 * 13 12 11 39 39 H 1.08999 * 109.46161 * 58.51961 * 14 13 12 40 40 H 1.08998 * 109.46971 * 93.84189 * 16 15 14 41 41 H 1.09000 * 109.47237 * 213.84575 * 16 15 14 42 42 H 1.09004 * 109.46820 * 333.84589 * 16 15 14 43 43 H 0.97001 * 120.00200 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.49603 * 301.41062 * 25 14 13 45 45 H 1.09001 * 109.52595 * 181.33240 * 25 14 13 46 46 H 1.09003 * 109.58536 * 353.37266 * 26 11 9 47 47 H 1.08998 * 109.58848 * 113.65129 * 26 11 9 48 48 H 1.07995 * 119.99179 * 0.02588 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1990 0.0005 5 6 4.2725 0.0000 0.0055 6 9 5.6235 0.0000 0.0112 7 6 3.5797 -1.1985 -0.0003 8 6 4.3325 -2.5042 -0.0003 9 6 4.7971 -2.8162 -1.3995 10 8 4.5426 -2.0532 -2.3073 11 7 5.4956 -3.9430 -1.6421 12 6 5.8170 -4.8738 -0.5517 13 6 5.3310 -6.2764 -0.9475 14 6 5.9392 -6.6582 -2.2990 15 7 5.5077 -8.0096 -2.6643 16 6 4.0816 -8.3054 -2.8230 17 6 6.4372 -8.9965 -2.8574 18 1 7.4131 -8.9155 -2.4021 19 6 6.1250 -10.1008 -3.6384 20 7 5.0350 -10.0982 -4.3760 21 14 7.2520 -11.5905 -3.6424 22 1 8.4016 -11.3440 -2.7352 23 1 6.4992 -12.7819 -3.1743 24 1 7.7509 -11.8301 -5.0204 25 6 5.4728 -5.6675 -3.3683 26 6 5.9559 -4.2606 -3.0007 27 6 2.1975 -1.1973 -0.0005 28 1 -0.3634 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5143 31 1 1.6571 2.1327 -0.0004 32 1 4.1189 2.1346 0.0010 33 1 3.6772 -3.3012 0.3512 34 1 5.1958 -2.4258 0.6603 35 1 6.8949 -4.8896 -0.3904 36 1 5.3134 -4.5553 0.3611 37 1 4.2437 -6.2792 -1.0241 38 1 5.6444 -6.9962 -0.1913 39 1 7.0266 -6.6309 -2.2286 40 1 3.8019 -8.1945 -3.8706 41 1 3.8845 -9.3277 -2.5005 42 1 3.4973 -7.6138 -2.2158 43 1 4.8166 -10.8701 -4.9215 44 1 4.3841 -5.6761 -3.4220 45 1 5.8870 -5.9532 -4.3352 46 1 5.5441 -3.5372 -3.7045 47 1 7.0447 -4.2249 -3.0353 48 1 1.6570 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985764708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:16 Heat of formation + Delta-G solvation = -38.167582 kcal Electronic energy + Delta-G solvation = -28995.353892 eV Core-core repulsion = 24965.043787 eV Total energy + Delta-G solvation = -4030.310104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.98038 -40.26189 -39.22642 -37.46437 -35.04692 -33.65193 -32.35623 -32.07465 -30.83037 -29.77837 -28.05647 -26.75584 -26.00726 -24.78651 -23.10417 -22.70903 -22.14865 -21.14833 -19.68630 -18.46534 -17.68097 -17.14808 -16.85497 -16.73988 -15.93381 -15.55738 -15.21574 -15.05474 -14.95792 -14.26439 -13.96396 -13.91022 -13.74892 -13.71653 -13.64940 -13.40218 -13.18163 -13.07436 -12.56057 -12.35023 -12.27948 -12.05200 -11.85545 -11.72019 -11.66140 -11.43154 -11.19021 -10.92905 -10.86537 -10.79924 -10.39447 -10.22019 -10.12748 -9.86345 -9.77662 -9.58976 -9.11570 -8.62132 -8.57306 -8.43366 -6.75313 -5.72622 -3.19097 0.93917 1.01132 2.71712 3.06190 3.36521 3.41922 3.43819 3.45594 4.12600 4.29577 4.46077 4.48171 4.56778 4.63900 4.91776 4.94534 5.05127 5.11436 5.23613 5.26203 5.32136 5.33398 5.37537 5.43343 5.50974 5.56773 5.61590 5.69695 5.79269 5.87492 5.90303 5.97309 6.03602 6.06822 6.16072 6.26048 6.26587 6.37602 6.53719 6.62440 6.70220 6.79205 6.98037 7.01357 7.39170 7.54406 7.73718 7.80571 8.27597 8.39950 9.23678 9.87146 10.36589 11.32182 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.002377 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.805927 B =11774.472074 C =12306.192894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.095 4.095 4 C -0.150 4.150 5 C 0.109 3.891 6 F -0.138 7.138 7 C -0.092 4.092 8 C -0.103 4.103 9 C 0.517 3.483 10 O -0.541 6.541 11 N -0.606 5.606 12 C 0.108 3.892 13 C -0.147 4.147 14 C 0.180 3.820 15 N -0.597 5.597 16 C 0.165 3.835 17 C -0.254 4.254 18 H 0.068 0.932 19 C 0.001 3.999 20 N -0.907 5.907 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.291 1.291 25 C -0.144 4.144 26 C 0.114 3.886 27 C -0.081 4.081 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.027 0.973 41 H 0.042 0.958 42 H -0.004 1.004 43 H 0.251 0.749 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.064 0.936 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.845 20.384 12.461 24.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.113 4.113 4 C -0.169 4.169 5 C 0.090 3.910 6 F -0.116 7.116 7 C -0.093 4.093 8 C -0.143 4.143 9 C 0.305 3.695 10 O -0.418 6.418 11 N -0.339 5.339 12 C -0.015 4.015 13 C -0.188 4.188 14 C 0.071 3.929 15 N -0.318 5.318 16 C 0.020 3.980 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.197 4.197 20 N -0.553 5.553 21 Si 0.734 3.266 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.218 1.218 25 C -0.184 4.184 26 C -0.008 4.008 27 C -0.099 4.099 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.061 0.939 42 H 0.015 0.985 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.082 0.918 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.989 20.605 11.854 24.515 hybrid contribution 0.861 -1.013 -0.159 1.339 sum -5.129 19.593 11.695 23.387 Atomic orbital electron populations 1.20778 0.90647 1.03128 1.02399 1.19917 0.96501 0.92822 1.00514 1.20857 0.92993 0.97969 0.99445 1.21071 0.95037 0.96871 1.03948 1.17474 0.76827 0.94071 1.02616 1.91486 1.29021 1.97375 1.93758 1.19357 0.94172 0.92929 1.02863 1.20642 1.01578 0.95713 0.96318 1.20312 0.77927 0.80942 0.90357 1.90694 1.56646 1.48201 1.46295 1.48155 1.54370 1.21378 1.09988 1.21935 1.00702 0.90001 0.88902 1.22558 1.01497 0.94086 1.00615 1.20276 0.97058 0.85224 0.90351 1.43966 1.02760 1.04152 1.80925 1.20732 0.82607 0.97022 0.97623 1.19260 0.95946 0.98550 1.24557 0.91407 1.25039 0.97879 0.99846 0.96984 1.70079 1.26227 1.29611 1.29336 0.86193 0.80044 0.83056 0.77293 1.20354 1.21690 1.21767 1.22501 1.01429 0.93114 1.01341 1.21698 0.98738 0.97885 0.82526 1.20800 0.92169 0.98319 0.98605 0.91044 0.91404 0.91254 0.85198 0.84829 0.87371 0.87740 0.91221 0.90442 0.91910 0.90755 0.91930 0.95511 0.93929 0.98508 0.93836 0.92282 0.90657 0.89721 0.91785 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.00 0.36 -0.37 16 2 C -0.10 -0.89 5.88 -104.62 -0.62 -1.50 16 3 C -0.09 -0.83 9.70 -39.59 -0.38 -1.22 16 4 C -0.15 -1.53 10.03 -39.51 -0.40 -1.93 16 5 C 0.11 1.35 7.14 -39.42 -0.28 1.07 16 6 F -0.14 -1.86 16.66 2.25 0.04 -1.82 16 7 C -0.09 -1.09 4.43 -104.55 -0.46 -1.55 16 8 C -0.10 -1.14 3.90 -29.04 -0.11 -1.26 16 9 C 0.52 7.70 7.69 -10.99 -0.08 7.62 16 10 O -0.54 -10.02 15.37 5.55 0.09 -9.94 16 11 N -0.61 -8.74 2.97 -172.48 -0.51 -9.25 16 12 C 0.11 1.33 6.37 -3.48 -0.02 1.30 16 13 C -0.15 -2.29 5.34 -26.38 -0.14 -2.43 16 14 C 0.18 3.46 2.55 -67.89 -0.17 3.28 16 15 N -0.60 -14.43 2.81 -173.43 -0.49 -14.92 16 16 C 0.16 4.00 8.03 59.85 0.48 4.48 16 17 C -0.25 -6.79 9.59 -15.06 -0.14 -6.94 16 18 H 0.07 1.77 7.82 -52.49 -0.41 1.36 16 19 C 0.00 0.02 5.12 -17.43 -0.09 -0.07 16 20 N -0.91 -26.28 10.64 55.49 0.59 -25.69 16 21 Si 0.90 21.62 29.57 -169.99 -5.03 16.59 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C -0.14 -2.62 5.34 -26.59 -0.14 -2.76 16 26 C 0.11 1.79 6.43 -3.69 -0.02 1.77 16 27 C -0.08 -0.84 9.32 -39.59 -0.37 -1.20 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.07 0.44 8.09 -51.92 -0.42 0.02 16 31 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.11 0.96 7.56 -51.93 -0.39 0.57 16 34 H 0.10 1.00 7.73 -51.93 -0.40 0.60 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.73 5.93 -51.93 -0.31 0.43 16 37 H 0.06 1.02 6.72 -51.93 -0.35 0.67 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.22 7.86 -51.93 -0.41 0.81 16 40 H 0.03 0.71 7.42 -51.93 -0.39 0.32 16 41 H 0.04 1.12 7.22 -51.93 -0.37 0.74 16 42 H 0.00 -0.08 6.46 -51.93 -0.34 -0.41 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.06 1.15 7.72 -51.93 -0.40 0.75 16 45 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 46 H 0.08 1.41 7.01 -51.93 -0.36 1.05 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.13 1.14 8.04 -52.49 -0.42 0.72 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -32.61 384.99 -9.60 -42.21 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.49 Total: -1.27 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -2.60 Total: -1.71 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.41 Total: -49.86 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.61 -9.60 -42.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985764708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.038 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds