Wall clock time and date at job start Tue Mar 31 2020 17:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38268 * 119.97566 * 2 1 4 4 C 1.38179 * 120.02862 * 179.97438 * 3 2 1 5 5 C 1.38483 * 119.97096 * 359.79062 * 4 3 2 6 6 F 1.35101 * 120.02378 * 180.25347 * 5 4 3 7 7 C 1.38437 * 119.94599 * 0.48556 * 5 4 3 8 8 C 1.50706 * 120.00617 * 179.76526 * 7 5 4 9 9 C 1.50693 * 109.47442 * 279.72407 * 8 7 5 10 10 O 1.21285 * 119.99926 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00317 * 180.02562 * 9 8 7 12 12 C 1.46930 * 120.62835 * 359.71498 * 11 9 8 13 13 C 1.53626 * 108.54000 * 126.36826 * 12 11 9 14 14 C 1.53043 * 109.24104 * 54.86460 * 13 12 11 15 15 N 1.46489 * 109.46305 * 178.48868 * 14 13 12 16 16 C 1.46507 * 120.00277 * 60.06440 * 15 14 13 17 17 C 1.36942 * 120.00185 * 240.06268 * 15 14 13 18 18 H 1.07995 * 119.99413 * 22.99155 * 17 15 14 19 19 C 1.38810 * 120.00356 * 202.98796 * 17 15 14 20 20 N 1.31618 * 119.99973 * 11.64909 * 19 17 15 21 21 Si 1.86796 * 120.00058 * 191.64816 * 19 17 15 22 22 H 1.48502 * 109.46993 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47114 * 120.00064 * 21 19 17 24 24 H 1.48496 * 109.47345 * 240.00233 * 21 19 17 25 25 C 1.53045 * 109.53340 * 298.50857 * 14 13 12 26 26 C 1.46926 * 120.63561 * 180.02562 * 11 9 8 27 27 C 1.38220 * 119.97370 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47547 * 269.97474 * 1 2 3 29 29 H 1.09003 * 109.46870 * 29.97837 * 1 2 3 30 30 H 1.09008 * 109.46904 * 149.97451 * 1 2 3 31 31 H 1.08004 * 119.98366 * 359.97438 * 3 2 1 32 32 H 1.07991 * 120.01191 * 180.02562 * 4 3 2 33 33 H 1.09006 * 109.46619 * 159.72283 * 8 7 5 34 34 H 1.08997 * 109.47058 * 39.73089 * 8 7 5 35 35 H 1.09001 * 109.59182 * 246.20660 * 12 11 9 36 36 H 1.09006 * 109.58309 * 6.63591 * 12 11 9 37 37 H 1.08993 * 109.63636 * 294.86890 * 13 12 11 38 38 H 1.09006 * 109.45877 * 174.73930 * 13 12 11 39 39 H 1.08999 * 109.46161 * 58.51961 * 14 13 12 40 40 H 1.08998 * 109.46971 * 93.84189 * 16 15 14 41 41 H 1.09000 * 109.47237 * 213.84575 * 16 15 14 42 42 H 1.09004 * 109.46820 * 333.84589 * 16 15 14 43 43 H 0.97001 * 120.00200 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.49603 * 301.41062 * 25 14 13 45 45 H 1.09001 * 109.52595 * 181.33240 * 25 14 13 46 46 H 1.09003 * 109.58536 * 353.37266 * 26 11 9 47 47 H 1.08998 * 109.58848 * 113.65129 * 26 11 9 48 48 H 1.07995 * 119.99179 * 0.02588 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1990 0.0005 5 6 4.2725 0.0000 0.0055 6 9 5.6235 0.0000 0.0112 7 6 3.5797 -1.1985 -0.0003 8 6 4.3325 -2.5042 -0.0003 9 6 4.7971 -2.8162 -1.3995 10 8 4.5426 -2.0532 -2.3073 11 7 5.4956 -3.9430 -1.6421 12 6 5.8170 -4.8738 -0.5517 13 6 5.3310 -6.2764 -0.9475 14 6 5.9392 -6.6582 -2.2990 15 7 5.5077 -8.0096 -2.6643 16 6 4.0816 -8.3054 -2.8230 17 6 6.4372 -8.9965 -2.8574 18 1 7.4131 -8.9155 -2.4021 19 6 6.1250 -10.1008 -3.6384 20 7 5.0350 -10.0982 -4.3760 21 14 7.2520 -11.5905 -3.6424 22 1 8.4016 -11.3440 -2.7352 23 1 6.4992 -12.7819 -3.1743 24 1 7.7509 -11.8301 -5.0204 25 6 5.4728 -5.6675 -3.3683 26 6 5.9559 -4.2606 -3.0007 27 6 2.1975 -1.1973 -0.0005 28 1 -0.3634 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5143 31 1 1.6571 2.1327 -0.0004 32 1 4.1189 2.1346 0.0010 33 1 3.6772 -3.3012 0.3512 34 1 5.1958 -2.4258 0.6603 35 1 6.8949 -4.8896 -0.3904 36 1 5.3134 -4.5553 0.3611 37 1 4.2437 -6.2792 -1.0241 38 1 5.6444 -6.9962 -0.1913 39 1 7.0266 -6.6309 -2.2286 40 1 3.8019 -8.1945 -3.8706 41 1 3.8845 -9.3277 -2.5005 42 1 3.4973 -7.6138 -2.2158 43 1 4.8166 -10.8701 -4.9215 44 1 4.3841 -5.6761 -3.4220 45 1 5.8870 -5.9532 -4.3352 46 1 5.5441 -3.5372 -3.7045 47 1 7.0447 -4.2249 -3.0353 48 1 1.6570 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985764708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:15 Heat of formation + Delta-G solvation = -55.367060 kcal Electronic energy + Delta-G solvation = -28996.099717 eV Core-core repulsion = 24965.043787 eV Total energy + Delta-G solvation = -4031.055930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.88259 -41.36883 -40.07751 -38.87671 -36.68962 -34.51749 -33.86957 -32.95862 -32.09055 -31.44853 -28.97767 -28.02995 -27.40704 -26.26704 -24.24109 -23.93729 -23.40558 -22.12123 -20.99377 -19.72604 -18.76430 -18.49495 -18.27595 -17.65842 -17.06252 -16.89755 -16.47280 -16.29814 -15.86017 -15.70681 -15.15238 -15.10950 -14.97360 -14.70407 -14.63446 -14.45782 -14.38539 -14.17162 -13.90167 -13.79086 -13.20500 -13.16411 -13.09730 -12.81642 -12.78627 -12.65493 -12.52011 -12.37310 -12.34274 -12.19338 -12.03310 -11.89150 -11.81965 -11.60313 -11.23852 -10.92549 -10.61969 -9.89044 -9.67032 -9.37571 -8.75458 -7.80715 -5.29034 0.17455 0.26992 1.46582 1.47961 1.57963 1.59696 1.99829 2.51528 2.62599 3.32854 3.35473 3.49189 3.57214 3.67242 3.76381 3.93858 3.94547 4.12051 4.19181 4.23529 4.31211 4.32840 4.38724 4.44252 4.50471 4.57068 4.66975 4.74799 4.81289 4.83184 4.89044 4.92324 4.98509 5.00717 5.02631 5.11189 5.20495 5.26126 5.31809 5.33210 5.37063 5.50747 5.58554 5.60997 5.67892 5.73306 5.98112 6.35165 6.42293 7.13921 7.17288 7.90269 8.34645 9.22703 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.002377 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.805927 B =11774.472074 C =12306.192894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.095 4.095 4 C -0.158 4.158 5 C 0.077 3.923 6 F -0.152 7.152 7 C -0.109 4.109 8 C -0.097 4.097 9 C 0.514 3.486 10 O -0.583 6.583 11 N -0.607 5.607 12 C 0.113 3.887 13 C -0.136 4.136 14 C 0.173 3.827 15 N -0.612 5.612 16 C 0.184 3.816 17 C -0.256 4.256 18 H 0.074 0.926 19 C -0.058 4.058 20 N -0.942 5.942 21 Si 0.968 3.032 22 H -0.263 1.263 23 H -0.293 1.293 24 H -0.296 1.296 25 C -0.130 4.130 26 C 0.124 3.876 27 C -0.094 4.094 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.159 0.841 32 H 0.148 0.852 33 H 0.135 0.865 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.062 0.938 40 H -0.006 1.006 41 H 0.015 0.985 42 H 0.027 0.973 43 H 0.246 0.754 44 H 0.042 0.958 45 H 0.049 0.951 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.975 21.641 14.895 26.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.113 4.113 4 C -0.177 4.177 5 C 0.058 3.942 6 F -0.131 7.131 7 C -0.110 4.110 8 C -0.136 4.136 9 C 0.303 3.697 10 O -0.464 6.464 11 N -0.339 5.339 12 C -0.009 4.009 13 C -0.175 4.175 14 C 0.066 3.934 15 N -0.334 5.334 16 C 0.038 3.962 17 C -0.386 4.386 18 H 0.092 0.908 19 C -0.252 4.252 20 N -0.589 5.589 21 Si 0.797 3.203 22 H -0.187 1.187 23 H -0.220 1.220 24 H -0.224 1.224 25 C -0.170 4.170 26 C 0.000 4.000 27 C -0.112 4.112 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.176 0.824 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.135 0.865 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.012 0.988 41 H 0.034 0.966 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.096 21.886 14.335 26.864 hybrid contribution 0.859 -1.304 -0.924 1.815 sum -5.237 20.581 13.411 25.117 Atomic orbital electron populations 1.20838 0.88691 1.03753 1.03542 1.20316 0.98011 0.92579 0.99117 1.21235 0.92583 0.99217 0.98257 1.21365 0.95877 0.96902 1.03511 1.17853 0.76503 0.95295 1.04551 1.91438 1.30019 1.97494 1.94117 1.19539 0.94896 0.93009 1.03590 1.20698 1.02731 0.96398 0.93779 1.21007 0.76921 0.80215 0.91540 1.90674 1.58125 1.49561 1.48018 1.48241 1.54164 1.21834 1.09710 1.22083 1.02221 0.87307 0.89327 1.22371 1.00768 0.96389 0.98005 1.20532 0.97361 0.83029 0.92469 1.44214 1.02291 1.05871 1.81001 1.20399 0.83508 0.96197 0.96051 1.19632 0.96417 0.99106 1.23493 0.90783 1.25812 0.99471 1.02673 0.97281 1.70254 1.28105 1.30017 1.30553 0.85184 0.78625 0.79558 0.76974 1.18748 1.22010 1.22359 1.22281 1.00098 0.94698 0.99966 1.21458 0.99383 0.95494 0.83626 1.21082 0.91873 0.99526 0.98675 0.89525 0.90236 0.91223 0.82375 0.83440 0.84668 0.85912 0.89494 0.86536 0.92529 0.90239 0.92005 0.98761 0.96594 0.95459 0.94504 0.93904 0.93178 0.90972 0.90359 0.83765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 71.24 0.71 -0.42 16 2 C -0.10 -1.61 5.88 -19.86 -0.12 -1.72 16 3 C -0.10 -1.47 9.70 22.26 0.22 -1.25 16 4 C -0.16 -3.03 10.03 22.31 0.22 -2.80 16 5 C 0.08 1.84 7.14 22.38 0.16 2.00 16 6 F -0.15 -4.04 16.66 44.97 0.75 -3.29 16 7 C -0.11 -2.42 4.43 -19.82 -0.09 -2.50 16 8 C -0.10 -1.90 3.90 29.10 0.11 -1.79 16 9 C 0.51 14.49 7.69 87.66 0.67 15.17 16 10 O -0.58 -21.51 15.37 -3.05 -0.05 -21.55 16 11 N -0.61 -16.31 2.97 -817.98 -2.43 -18.74 16 12 C 0.11 2.37 6.37 86.51 0.55 2.92 16 13 C -0.14 -3.88 5.34 30.82 0.16 -3.72 16 14 C 0.17 6.52 2.55 45.02 0.11 6.63 16 15 N -0.61 -29.72 2.81 -702.62 -1.97 -31.69 16 16 C 0.18 9.08 8.03 127.77 1.03 10.11 16 17 C -0.26 -13.74 9.59 84.03 0.81 -12.94 16 18 H 0.07 3.81 7.82 -2.91 -0.02 3.79 16 19 C -0.06 -3.23 5.12 84.86 0.43 -2.79 16 20 N -0.94 -56.18 10.64 21.65 0.23 -55.95 16 21 Si 0.97 44.86 29.57 68.60 2.03 46.89 16 22 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 25 C -0.13 -4.79 5.34 30.69 0.16 -4.62 16 26 C 0.12 3.82 6.43 86.37 0.56 4.38 16 27 C -0.09 -1.76 9.32 22.26 0.21 -1.55 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 30 H 0.07 0.72 8.09 -2.38 -0.02 0.70 16 31 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.15 2.23 8.06 -2.92 -0.02 2.21 16 33 H 0.14 1.88 7.56 -2.38 -0.02 1.86 16 34 H 0.12 1.95 7.73 -2.39 -0.02 1.93 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.12 1.63 5.93 -2.38 -0.01 1.61 16 37 H 0.06 1.70 6.72 -2.39 -0.02 1.69 16 38 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.06 2.34 7.86 -2.39 -0.02 2.32 16 40 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 41 H 0.02 0.83 7.22 -2.39 -0.02 0.82 16 42 H 0.03 1.15 6.46 -2.39 -0.02 1.14 16 43 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 44 H 0.04 1.69 7.72 -2.39 -0.02 1.67 16 45 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.07 2.44 7.01 -2.39 -0.02 2.42 16 47 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.14 2.19 8.04 -2.91 -0.02 2.17 16 Total: -1.00 -73.27 384.99 5.43 -67.84 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.95 Total: 11.40 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.92 Total: 5.09 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -4.17 Total: -106.38 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.05 Total: -21.55 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.75 Total: -3.29 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -73.27 5.43 -67.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985764708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.477 kcal (2) G-P(sol) polarization free energy of solvation -73.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds