Wall clock time and date at job start Tue Mar 31 2020 17:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38271 * 119.97482 * 2 1 4 4 C 1.38170 * 120.02093 * 179.97438 * 3 2 1 5 5 C 1.38480 * 119.98060 * 359.78506 * 4 3 2 6 6 F 1.35102 * 120.02985 * 180.25272 * 5 4 3 7 7 C 1.38443 * 119.94716 * 0.44772 * 5 4 3 8 8 C 1.50697 * 120.01547 * 179.81119 * 7 5 4 9 9 C 1.50705 * 109.46921 * 279.72106 * 8 7 5 10 10 O 1.21274 * 119.99980 * 0.02562 * 9 8 7 11 11 N 1.34770 * 119.99741 * 179.97438 * 9 8 7 12 12 C 1.46932 * 120.63347 * 354.21477 * 11 9 8 13 13 C 1.53196 * 108.77427 * 126.36579 * 12 11 9 14 14 C 1.53044 * 109.31025 * 54.63992 * 13 12 11 15 15 H 1.09000 * 109.45924 * 178.62450 * 14 13 12 16 16 N 1.46497 * 109.46187 * 58.65146 * 14 13 12 17 17 C 1.36938 * 120.00093 * 84.99850 * 16 14 13 18 18 H 1.08000 * 119.99728 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00273 * 179.97438 * 17 16 14 20 20 N 1.31625 * 119.99987 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99994 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47232 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46734 * 120.00296 * 21 19 17 24 24 H 1.48494 * 109.47308 * 239.99929 * 21 19 17 25 25 C 1.53043 * 109.53716 * 298.63342 * 14 13 12 26 26 C 1.46930 * 120.62867 * 174.19207 * 11 9 8 27 27 H 1.09005 * 109.58147 * 113.70482 * 26 11 9 28 28 C 1.52994 * 109.58761 * 353.42114 * 26 11 9 29 29 C 1.38224 * 119.96963 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46949 * 270.02370 * 1 2 3 31 31 H 1.09004 * 109.46894 * 30.01743 * 1 2 3 32 32 H 1.09005 * 109.47162 * 150.02070 * 1 2 3 33 33 H 1.07996 * 119.98658 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.01003 * 180.02562 * 4 3 2 35 35 H 1.08995 * 109.46775 * 159.72159 * 8 7 5 36 36 H 1.08997 * 109.47046 * 39.72330 * 8 7 5 37 37 H 1.09003 * 109.58069 * 6.58374 * 12 11 9 38 38 H 1.08993 * 109.58481 * 246.15629 * 12 11 9 39 39 H 1.09000 * 109.49609 * 294.68744 * 13 12 11 40 40 H 1.08999 * 109.52008 * 174.60229 * 13 12 11 41 41 H 0.97006 * 120.00298 * 264.99940 * 16 14 13 42 42 H 0.97000 * 119.99712 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.49928 * 181.32178 * 25 14 13 44 44 H 1.09006 * 109.49241 * 301.41362 * 25 14 13 45 45 H 1.08993 * 109.47382 * 65.78413 * 28 26 11 46 46 H 1.08999 * 109.47237 * 185.78701 * 28 26 11 47 47 H 1.09000 * 109.47104 * 305.78413 * 28 26 11 48 48 H 1.07998 * 119.99068 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1978 0.0000 4 6 3.5796 1.1989 0.0005 5 6 4.2726 -0.0001 0.0056 6 9 5.6236 -0.0001 0.0113 7 6 3.5798 -1.1987 0.0007 8 6 4.3324 -2.5043 0.0019 9 6 4.7971 -2.8175 -1.3971 10 8 4.5427 -2.0553 -2.3055 11 7 5.4963 -3.9440 -1.6385 12 6 5.9223 -4.8123 -0.5324 13 6 5.4383 -6.2389 -0.8109 14 6 5.9384 -6.6834 -2.1873 15 1 5.6160 -7.7070 -2.3776 16 7 7.4016 -6.6187 -2.2192 17 6 8.1439 -7.6715 -1.7548 18 1 7.6505 -8.5498 -1.3653 19 6 9.5303 -7.6105 -1.7855 20 7 10.1315 -6.5403 -2.2606 21 14 10.5427 -9.0464 -1.1513 22 1 9.6345 -10.1197 -0.6735 23 1 11.3964 -9.5722 -2.2468 24 1 11.4022 -8.5892 -0.0300 25 6 5.3636 -5.7595 -3.2636 26 6 5.8467 -4.3276 -3.0129 27 1 6.9279 -4.2765 -3.1421 28 6 5.1667 -3.3767 -4.0000 29 6 2.1975 -1.1974 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6573 2.1327 -0.0004 34 1 4.1190 2.1345 0.0010 35 1 3.6771 -3.3010 0.3539 36 1 5.1958 -2.4254 0.6624 37 1 5.4876 -4.4546 0.4010 38 1 7.0097 -4.8032 -0.4587 39 1 4.3487 -6.2630 -0.7944 40 1 5.8288 -6.9115 -0.0473 41 1 7.8447 -5.8300 -2.5694 42 1 11.1004 -6.4978 -2.2824 43 1 5.7013 -6.0908 -4.2456 44 1 4.2747 -5.7884 -3.2240 45 1 5.5777 -2.3743 -3.8806 46 1 5.3432 -3.7229 -5.0183 47 1 4.0947 -3.3555 -3.8042 48 1 1.6569 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044830121.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:18 Heat of formation + Delta-G solvation = -38.512438 kcal Electronic energy + Delta-G solvation = -29609.669682 eV Core-core repulsion = 25579.344623 eV Total energy + Delta-G solvation = -4030.325058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.86682 -40.40539 -39.26891 -37.38646 -34.16627 -33.83165 -32.48282 -31.95327 -31.85240 -29.14233 -28.02888 -26.87537 -26.63701 -24.10393 -23.48045 -22.90670 -22.04501 -20.95837 -19.72213 -18.24657 -17.58470 -17.21670 -16.77762 -16.62715 -15.86598 -15.46787 -15.40525 -14.94010 -14.47125 -14.21233 -13.97651 -13.89630 -13.86205 -13.69934 -13.56245 -13.45968 -13.14144 -13.03974 -12.63311 -12.39465 -12.14713 -11.96588 -11.92975 -11.76157 -11.53983 -11.43056 -11.13697 -11.09421 -10.93570 -10.80215 -10.59294 -10.43329 -10.22287 -9.94029 -9.65091 -9.18691 -8.96560 -8.74519 -8.52876 -8.11208 -6.99964 -5.80058 -3.09236 1.01131 1.07304 2.87457 3.19177 3.40489 3.46350 3.48674 3.51702 4.21322 4.38614 4.54433 4.56252 4.62241 4.79330 4.98492 4.99012 5.18467 5.23320 5.32448 5.32872 5.39689 5.40029 5.42217 5.52929 5.58970 5.59596 5.71091 5.75741 5.78105 5.91473 5.92943 6.02569 6.04038 6.13576 6.14984 6.19352 6.31088 6.32038 6.44521 6.51256 6.62370 6.72786 6.76926 6.79638 6.84668 7.09310 7.67487 7.79073 8.38273 8.47999 9.49712 10.06603 10.41332 11.42368 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020447 B = 0.002765 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.051115 B =10122.938370 C =10417.242394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.096 4.096 4 C -0.151 4.151 5 C 0.111 3.889 6 F -0.136 7.136 7 C -0.089 4.089 8 C -0.106 4.106 9 C 0.516 3.484 10 O -0.536 6.536 11 N -0.597 5.597 12 C 0.113 3.887 13 C -0.149 4.149 14 C 0.174 3.826 15 H 0.050 0.950 16 N -0.722 5.722 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.132 4.132 26 C 0.146 3.854 27 H 0.079 0.921 28 C -0.134 4.134 29 C -0.082 4.082 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.040 0.960 47 H 0.058 0.942 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.945 12.566 5.917 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.114 4.114 4 C -0.170 4.170 5 C 0.092 3.908 6 F -0.114 7.114 7 C -0.090 4.090 8 C -0.146 4.146 9 C 0.304 3.696 10 O -0.415 6.415 11 N -0.330 5.330 12 C -0.010 4.010 13 C -0.190 4.190 14 C 0.063 3.937 15 H 0.068 0.932 16 N -0.365 5.365 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.171 4.171 26 C 0.044 3.956 27 H 0.097 0.903 28 C -0.191 4.191 29 C -0.100 4.100 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.059 0.941 47 H 0.077 0.923 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.936 12.783 5.485 23.496 hybrid contribution 1.236 -0.678 0.372 1.458 sum -17.700 12.105 5.857 22.229 Atomic orbital electron populations 1.20764 0.90771 1.02978 1.02311 1.19893 0.96382 0.92862 1.00830 1.20830 0.92990 0.97906 0.99634 1.21076 0.95025 0.96917 1.03935 1.17498 0.76955 0.94047 1.02313 1.91509 1.28897 1.97357 1.93663 1.19379 0.94101 0.93030 1.02486 1.20698 1.01470 0.95418 0.96976 1.20241 0.78179 0.81103 0.90087 1.90730 1.57444 1.48330 1.44952 1.48159 1.53931 1.22816 1.08143 1.21753 1.01529 0.90176 0.87528 1.22512 0.98709 0.95809 1.01971 1.20188 0.86011 0.96380 0.91094 0.93167 1.42528 0.98827 1.20004 1.75114 1.19270 0.88489 0.95735 1.33507 0.91156 1.24734 0.96583 0.97603 1.01949 1.69668 1.08514 1.27997 1.51783 0.86154 0.80378 0.81791 0.78057 1.20617 1.21947 1.21939 1.22238 0.99819 0.94652 1.00430 1.21235 0.99901 0.94238 0.80269 0.90292 1.22176 1.01083 0.99602 0.96251 1.20760 0.92171 0.98145 0.98923 0.91135 0.91470 0.91393 0.85295 0.84864 0.87695 0.87830 0.91241 0.89629 0.93324 0.90806 0.78114 0.93534 0.90796 0.92195 0.90663 0.94075 0.92302 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 2 C -0.10 -0.93 5.88 -104.61 -0.62 -1.55 16 3 C -0.10 -0.89 9.70 -39.59 -0.38 -1.27 16 4 C -0.15 -1.65 10.03 -39.52 -0.40 -2.05 16 5 C 0.11 1.49 7.14 -39.42 -0.28 1.20 16 6 F -0.14 -2.06 16.66 2.25 0.04 -2.02 16 7 C -0.09 -1.11 4.43 -104.55 -0.46 -1.57 16 8 C -0.11 -1.31 3.92 -29.03 -0.11 -1.42 16 9 C 0.52 8.15 7.49 -10.99 -0.08 8.06 16 10 O -0.54 -9.76 11.53 5.56 0.06 -9.69 16 11 N -0.60 -9.64 2.97 -165.22 -0.49 -10.14 16 12 C 0.11 1.76 6.09 -3.71 -0.02 1.74 16 13 C -0.15 -2.39 5.78 -26.61 -0.15 -2.54 16 14 C 0.17 3.24 3.10 -67.89 -0.21 3.03 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 N -0.72 -16.94 4.31 -53.38 -0.23 -17.17 16 17 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 21 Si 0.90 21.87 29.55 -169.99 -5.02 16.84 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 25 C -0.13 -2.19 5.07 -26.61 -0.13 -2.33 16 26 C 0.15 2.52 3.19 -67.60 -0.22 2.30 16 27 H 0.08 1.56 6.65 -51.93 -0.35 1.21 16 28 C -0.13 -2.20 7.61 37.15 0.28 -1.92 16 29 C -0.08 -0.87 9.32 -39.59 -0.37 -1.24 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.10 1.03 7.79 -51.93 -0.40 0.63 16 36 H 0.10 1.23 7.50 -51.93 -0.39 0.84 16 37 H 0.07 0.87 5.93 -51.93 -0.31 0.56 16 38 H 0.09 1.61 7.74 -51.93 -0.40 1.21 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.38 9.71 6.07 -40.82 -0.25 9.46 16 42 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.07 1.36 6.54 -51.93 -0.34 1.02 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.98 6.96 -51.93 -0.36 0.62 16 48 H 0.13 1.12 8.04 -52.49 -0.42 0.70 16 LS Contribution 382.14 15.07 5.76 5.76 Total: -1.00 -31.12 382.14 -9.61 -40.73 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.41 Total: 9.19 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -3.04 Total: -6.81 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.00 Total: -54.00 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.06 Total: -9.69 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.12 -9.61 -40.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044830121.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.213 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds