Wall clock time and date at job start Tue Mar 31 2020 18:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38456 * 119.88769 * 2 1 4 4 C 1.38211 * 120.33395 * 179.69449 * 3 2 1 5 5 C 1.38313 * 120.11948 * 0.56381 * 4 3 2 6 6 F 1.35100 * 120.11326 * 179.71592 * 5 4 3 7 7 C 1.39835 * 119.77692 * 359.44238 * 5 4 3 8 8 C 1.47689 * 120.16554 * 180.30135 * 7 5 4 9 9 O 1.21569 * 120.00151 * 37.98309 * 8 7 5 10 10 N 1.34776 * 119.99752 * 217.98637 * 8 7 5 11 11 C 1.46923 * 120.63095 * 4.90725 * 10 8 7 12 12 C 1.53196 * 108.77856 * 126.36812 * 11 10 8 13 13 C 1.53047 * 109.30990 * 54.63264 * 12 11 10 14 14 C 1.53041 * 109.53672 * 298.63582 * 13 12 11 15 15 H 1.08999 * 109.49909 * 301.38041 * 14 13 12 16 16 C 1.53007 * 109.49213 * 181.31731 * 14 13 12 17 17 H 1.08996 * 109.47279 * 59.99989 * 16 14 13 18 18 C 1.53004 * 109.47029 * 299.99792 * 16 14 13 19 19 N 1.46507 * 109.46611 * 180.02562 * 16 14 13 20 20 C 1.36938 * 119.99468 * 204.99980 * 19 16 14 21 21 H 1.07990 * 120.00252 * 0.02562 * 20 19 16 22 22 C 1.38813 * 119.99538 * 180.02562 * 20 19 16 23 23 N 1.31622 * 120.00253 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99830 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47228 * 89.99794 * 24 22 20 26 26 H 1.48502 * 109.47050 * 209.99608 * 24 22 20 27 27 H 1.48498 * 109.47293 * 329.99953 * 24 22 20 28 28 C 1.46929 * 120.63252 * 184.62544 * 10 8 7 29 29 C 1.37853 * 119.88823 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47248 * 270.02034 * 1 2 3 31 31 H 1.09010 * 109.46940 * 30.02239 * 1 2 3 32 32 H 1.08998 * 109.47167 * 150.01511 * 1 2 3 33 33 H 1.07995 * 119.83551 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.93736 * 180.28275 * 4 3 2 35 35 H 1.09000 * 109.58601 * 246.15311 * 11 10 8 36 36 H 1.09002 * 109.59100 * 6.57662 * 11 10 8 37 37 H 1.08996 * 109.49917 * 174.58350 * 12 11 10 38 38 H 1.08995 * 109.49760 * 294.68512 * 12 11 10 39 39 H 1.08997 * 109.45846 * 58.65686 * 13 12 11 40 40 H 1.09001 * 109.45921 * 178.63099 * 13 12 11 41 41 H 1.09004 * 109.46849 * 180.02562 * 18 16 14 42 42 H 1.08996 * 109.47251 * 300.00214 * 18 16 14 43 43 H 1.09001 * 109.47154 * 60.00603 * 18 16 14 44 44 H 0.96992 * 120.00009 * 25.00054 * 19 16 14 45 45 H 0.96998 * 120.00090 * 180.02562 * 23 22 20 46 46 H 1.09004 * 109.58395 * 353.41886 * 28 10 8 47 47 H 1.08994 * 109.58626 * 113.84057 * 28 10 8 48 48 H 1.07997 * 120.06453 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.2004 0.0000 4 6 3.5790 1.2112 0.0064 5 6 4.2824 0.0203 0.0010 6 9 5.6334 0.0310 0.0014 7 6 3.5906 -1.1949 0.0009 8 6 4.3330 -2.4716 0.0020 9 8 5.3555 -2.5797 0.6507 10 7 3.8770 -3.5168 -0.7164 11 6 2.7042 -3.3706 -1.5892 12 6 3.0762 -3.8427 -2.9983 13 6 3.6314 -5.2670 -2.9248 14 6 4.8951 -5.2798 -2.0617 15 1 5.6345 -4.6026 -2.4892 16 6 5.4677 -6.6979 -2.0158 17 1 5.7149 -7.0229 -3.0264 18 6 4.4299 -7.6477 -1.4141 19 7 6.6771 -6.7096 -1.1890 20 6 7.6332 -7.6696 -1.3880 21 1 7.4959 -8.4177 -2.1546 22 6 8.7788 -7.6810 -0.6042 23 7 8.9464 -6.7689 0.3298 24 14 10.0827 -8.9909 -0.8751 25 1 11.0702 -8.5075 -1.8733 26 1 10.7741 -9.2739 0.4083 27 1 9.4404 -10.2327 -1.3757 28 6 4.5470 -4.8226 -0.6463 29 6 2.1940 -1.1952 0.0005 30 1 -0.3634 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5142 32 1 -0.3633 -0.8901 -0.5136 33 1 1.6525 2.1331 -0.0004 34 1 4.1107 2.1513 0.0109 35 1 1.8847 -3.9780 -1.2048 36 1 2.4016 -2.3240 -1.6224 37 1 2.1895 -3.8301 -3.6321 38 1 3.8325 -3.1786 -3.4166 39 1 2.8836 -5.9259 -2.4835 40 1 3.8742 -5.6144 -3.9290 41 1 4.8380 -8.6579 -1.3810 42 1 4.1828 -7.3227 -0.4035 43 1 3.5299 -7.6391 -2.0289 44 1 6.8005 -6.0375 -0.5007 45 1 9.7471 -6.7767 0.8772 46 1 5.4601 -4.7336 -0.0577 47 1 3.8810 -5.5507 -0.1835 48 1 1.6532 -2.1300 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732525708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:57 Heat of formation + Delta-G solvation = -42.086378 kcal Electronic energy + Delta-G solvation = -29607.700615 eV Core-core repulsion = 25577.220579 eV Total energy + Delta-G solvation = -4030.480036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.94034 -40.62656 -39.04617 -37.69176 -35.46609 -33.12271 -32.77935 -31.84854 -31.68781 -29.63534 -27.83212 -27.00406 -25.88990 -24.49749 -23.68147 -23.18685 -22.11994 -21.13244 -19.54542 -18.63102 -17.62794 -17.46619 -16.96962 -16.76420 -15.96858 -15.51720 -14.96768 -14.90338 -14.75793 -14.62675 -14.34474 -14.00723 -13.98254 -13.72793 -13.63517 -13.56111 -13.01470 -12.93791 -12.72492 -12.41854 -12.37695 -12.22166 -12.05985 -11.80661 -11.64814 -11.44765 -11.05726 -10.96233 -10.80819 -10.58456 -10.42458 -10.21894 -10.18523 -9.89633 -9.71268 -9.49093 -9.28445 -8.84048 -8.82092 -8.42348 -6.88081 -5.66378 -2.96412 0.54019 0.81991 2.68864 2.97468 3.36957 3.48960 3.53336 3.55789 3.97903 4.22642 4.38853 4.41268 4.63838 4.72323 4.76579 4.80631 4.92792 5.01986 5.12395 5.21201 5.24854 5.34351 5.39019 5.41938 5.49228 5.62926 5.65576 5.70370 5.72286 5.80061 5.83252 5.86283 5.89152 5.98896 6.04970 6.10742 6.15570 6.28207 6.39493 6.43786 6.48125 6.61307 6.68159 6.80040 6.93182 7.16529 7.47690 7.77457 8.25589 8.51000 9.61723 10.20006 10.53892 11.55624 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.003076 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.631835 B = 9101.020343 C =10294.851851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.108 4.108 3 C -0.072 4.072 4 C -0.158 4.158 5 C 0.147 3.853 6 F -0.119 7.119 7 C -0.156 4.156 8 C 0.552 3.448 9 O -0.512 6.512 10 N -0.602 5.602 11 C 0.094 3.906 12 C -0.135 4.135 13 C -0.114 4.114 14 C -0.104 4.104 15 H 0.073 0.927 16 C 0.181 3.819 17 H 0.049 0.951 18 C -0.169 4.169 19 N -0.726 5.726 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.928 5.928 24 Si 0.905 3.095 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.283 1.283 28 C 0.116 3.884 29 C -0.065 4.065 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.038 0.962 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.102 0.898 47 H 0.072 0.928 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.856 15.945 -4.381 28.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.108 4.108 3 C -0.091 4.091 4 C -0.177 4.177 5 C 0.126 3.874 6 F -0.097 7.097 7 C -0.160 4.160 8 C 0.339 3.661 9 O -0.387 6.387 10 N -0.336 5.336 11 C -0.028 4.028 12 C -0.173 4.173 13 C -0.152 4.152 14 C -0.124 4.124 15 H 0.091 0.909 16 C 0.070 3.930 17 H 0.067 0.933 18 C -0.229 4.229 19 N -0.368 5.368 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.576 5.576 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.209 1.209 28 C -0.005 4.005 29 C -0.083 4.083 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.153 0.847 34 H 0.160 0.840 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.220 0.780 45 H 0.065 0.935 46 H 0.121 0.879 47 H 0.090 0.910 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.107 15.723 -4.060 27.431 hybrid contribution 1.119 -0.514 0.090 1.235 sum -20.988 15.209 -3.970 26.222 Atomic orbital electron populations 1.20786 0.90174 1.03192 1.02754 1.19898 0.96772 0.92564 1.01595 1.21045 0.92955 0.98157 0.96902 1.21135 0.94965 0.97024 1.04576 1.17707 0.77525 0.93120 0.99026 1.91604 1.27983 1.97209 1.92907 1.20108 0.94574 0.93148 1.08203 1.18072 0.84537 0.83058 0.80447 1.90907 1.23075 1.82477 1.42216 1.48030 1.30533 1.11160 1.43827 1.22164 0.87893 1.02200 0.90577 1.21936 1.01365 0.98067 0.95920 1.21627 0.97549 0.95658 1.00397 1.21703 0.96784 0.99205 0.94731 0.90866 1.20166 0.87392 0.90436 0.94994 0.93317 1.22575 0.98538 1.01467 1.00316 1.42528 1.17768 1.35473 1.41035 1.19205 0.97393 1.06053 1.14486 0.91273 1.24759 0.98554 0.98917 0.98722 1.69679 1.28375 1.35832 1.23755 0.86229 0.82082 0.81224 0.76864 1.21820 1.21842 1.20862 1.21778 0.98993 0.81470 0.98226 1.21256 0.91646 0.98879 0.96566 0.90837 0.91200 0.91156 0.84656 0.84048 0.91192 0.89211 0.90900 0.91577 0.91371 0.91599 0.92878 0.93339 0.94259 0.78004 0.93492 0.87949 0.90968 0.84038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.01 36.01 0.36 -0.14 16 2 C -0.11 -0.79 5.87 -104.68 -0.61 -1.41 16 3 C -0.07 -0.52 9.69 -39.51 -0.38 -0.90 16 4 C -0.16 -1.48 10.01 -39.56 -0.40 -1.88 16 5 C 0.15 1.96 7.24 -38.96 -0.28 1.68 16 6 F -0.12 -1.97 16.19 2.25 0.04 -1.93 16 7 C -0.16 -2.08 5.23 -104.91 -0.55 -2.63 16 8 C 0.55 9.46 7.23 -12.40 -0.09 9.37 16 9 O -0.51 -11.38 15.61 5.30 0.08 -11.30 16 10 N -0.60 -8.95 2.98 -174.20 -0.52 -9.47 16 11 C 0.09 0.97 4.84 -3.71 -0.02 0.95 16 12 C -0.13 -1.38 6.08 -26.61 -0.16 -1.54 16 13 C -0.11 -1.41 4.78 -26.69 -0.13 -1.54 16 14 C -0.10 -1.74 2.32 -90.72 -0.21 -1.96 16 15 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 16 C 0.18 3.58 2.72 -67.92 -0.19 3.39 16 17 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 18 C -0.17 -2.98 8.79 37.16 0.33 -2.65 16 19 N -0.73 -18.67 5.04 -53.42 -0.27 -18.94 16 20 C -0.24 -6.83 9.93 -15.06 -0.15 -6.98 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -29.36 13.06 55.49 0.72 -28.64 16 24 Si 0.90 23.09 29.55 -169.99 -5.02 18.07 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 28 C 0.12 2.02 5.21 -3.93 -0.02 2.00 16 29 C -0.07 -0.61 6.99 -39.19 -0.27 -0.89 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.23 8.08 -51.92 -0.42 -0.19 16 32 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 33 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.09 0.79 4.53 -51.93 -0.24 0.55 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.78 6.50 -51.93 -0.34 0.44 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.86 6.32 -51.93 -0.33 0.53 16 43 H 0.04 0.56 6.46 -51.93 -0.34 0.22 16 44 H 0.39 10.74 6.16 -40.82 -0.25 10.49 16 45 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 46 H 0.10 2.24 5.57 -51.93 -0.29 1.95 16 47 H 0.07 1.17 6.16 -51.93 -0.32 0.86 16 48 H 0.14 1.10 6.29 -52.49 -0.33 0.77 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -35.44 377.64 -9.18 -44.63 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.03 Total: 7.50 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.87 Total: -5.61 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.06 Total: -57.04 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.44 -9.18 -44.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732525708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.539 kcal (2) G-P(sol) polarization free energy of solvation -35.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds