Wall clock time and date at job start Tue Mar 31 2020 18:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38456 * 119.88769 * 2 1 4 4 C 1.38211 * 120.33395 * 179.69449 * 3 2 1 5 5 C 1.38313 * 120.11948 * 0.56381 * 4 3 2 6 6 F 1.35100 * 120.11326 * 179.71592 * 5 4 3 7 7 C 1.39835 * 119.77692 * 359.44238 * 5 4 3 8 8 C 1.47689 * 120.16554 * 180.30135 * 7 5 4 9 9 O 1.21569 * 120.00151 * 37.98309 * 8 7 5 10 10 N 1.34776 * 119.99752 * 217.98637 * 8 7 5 11 11 C 1.46923 * 120.63095 * 4.90725 * 10 8 7 12 12 C 1.53196 * 108.77856 * 126.36812 * 11 10 8 13 13 C 1.53047 * 109.30990 * 54.63264 * 12 11 10 14 14 C 1.53041 * 109.53672 * 298.63582 * 13 12 11 15 15 H 1.08999 * 109.49909 * 301.38041 * 14 13 12 16 16 C 1.53007 * 109.49213 * 181.31731 * 14 13 12 17 17 H 1.08996 * 109.47279 * 59.99989 * 16 14 13 18 18 C 1.53004 * 109.47029 * 299.99792 * 16 14 13 19 19 N 1.46507 * 109.46611 * 180.02562 * 16 14 13 20 20 C 1.36938 * 119.99468 * 204.99980 * 19 16 14 21 21 H 1.07990 * 120.00252 * 0.02562 * 20 19 16 22 22 C 1.38813 * 119.99538 * 180.02562 * 20 19 16 23 23 N 1.31622 * 120.00253 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99830 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47228 * 89.99794 * 24 22 20 26 26 H 1.48502 * 109.47050 * 209.99608 * 24 22 20 27 27 H 1.48498 * 109.47293 * 329.99953 * 24 22 20 28 28 C 1.46929 * 120.63252 * 184.62544 * 10 8 7 29 29 C 1.37853 * 119.88823 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47248 * 270.02034 * 1 2 3 31 31 H 1.09010 * 109.46940 * 30.02239 * 1 2 3 32 32 H 1.08998 * 109.47167 * 150.01511 * 1 2 3 33 33 H 1.07995 * 119.83551 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.93736 * 180.28275 * 4 3 2 35 35 H 1.09000 * 109.58601 * 246.15311 * 11 10 8 36 36 H 1.09002 * 109.59100 * 6.57662 * 11 10 8 37 37 H 1.08996 * 109.49917 * 174.58350 * 12 11 10 38 38 H 1.08995 * 109.49760 * 294.68512 * 12 11 10 39 39 H 1.08997 * 109.45846 * 58.65686 * 13 12 11 40 40 H 1.09001 * 109.45921 * 178.63099 * 13 12 11 41 41 H 1.09004 * 109.46849 * 180.02562 * 18 16 14 42 42 H 1.08996 * 109.47251 * 300.00214 * 18 16 14 43 43 H 1.09001 * 109.47154 * 60.00603 * 18 16 14 44 44 H 0.96992 * 120.00009 * 25.00054 * 19 16 14 45 45 H 0.96998 * 120.00090 * 180.02562 * 23 22 20 46 46 H 1.09004 * 109.58395 * 353.41886 * 28 10 8 47 47 H 1.08994 * 109.58626 * 113.84057 * 28 10 8 48 48 H 1.07997 * 120.06453 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.2004 0.0000 4 6 3.5790 1.2112 0.0064 5 6 4.2824 0.0203 0.0010 6 9 5.6334 0.0310 0.0014 7 6 3.5906 -1.1949 0.0009 8 6 4.3330 -2.4716 0.0020 9 8 5.3555 -2.5797 0.6507 10 7 3.8770 -3.5168 -0.7164 11 6 2.7042 -3.3706 -1.5892 12 6 3.0762 -3.8427 -2.9983 13 6 3.6314 -5.2670 -2.9248 14 6 4.8951 -5.2798 -2.0617 15 1 5.6345 -4.6026 -2.4892 16 6 5.4677 -6.6979 -2.0158 17 1 5.7149 -7.0229 -3.0264 18 6 4.4299 -7.6477 -1.4141 19 7 6.6771 -6.7096 -1.1890 20 6 7.6332 -7.6696 -1.3880 21 1 7.4959 -8.4177 -2.1546 22 6 8.7788 -7.6810 -0.6042 23 7 8.9464 -6.7689 0.3298 24 14 10.0827 -8.9909 -0.8751 25 1 11.0702 -8.5075 -1.8733 26 1 10.7741 -9.2739 0.4083 27 1 9.4404 -10.2327 -1.3757 28 6 4.5470 -4.8226 -0.6463 29 6 2.1940 -1.1952 0.0005 30 1 -0.3634 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5142 32 1 -0.3633 -0.8901 -0.5136 33 1 1.6525 2.1331 -0.0004 34 1 4.1107 2.1513 0.0109 35 1 1.8847 -3.9780 -1.2048 36 1 2.4016 -2.3240 -1.6224 37 1 2.1895 -3.8301 -3.6321 38 1 3.8325 -3.1786 -3.4166 39 1 2.8836 -5.9259 -2.4835 40 1 3.8742 -5.6144 -3.9290 41 1 4.8380 -8.6579 -1.3810 42 1 4.1828 -7.3227 -0.4035 43 1 3.5299 -7.6391 -2.0289 44 1 6.8005 -6.0375 -0.5007 45 1 9.7471 -6.7767 0.8772 46 1 5.4601 -4.7336 -0.0577 47 1 3.8810 -5.5507 -0.1835 48 1 1.6532 -2.1300 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732525708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:55 Heat of formation + Delta-G solvation = -65.368683 kcal Electronic energy + Delta-G solvation = -29608.710211 eV Core-core repulsion = 25577.220579 eV Total energy + Delta-G solvation = -4031.489632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -50.02098 -41.74664 -39.97747 -39.03374 -37.01289 -34.79985 -33.46955 -33.26503 -32.63008 -31.28231 -29.40054 -27.56566 -26.98945 -26.26657 -24.77854 -24.53367 -22.98557 -22.35534 -20.76339 -19.93395 -19.28385 -18.51744 -18.34191 -17.72964 -17.14242 -16.74861 -16.67137 -16.03724 -16.03704 -15.57875 -15.52035 -15.33163 -15.19638 -14.92138 -14.49396 -14.45530 -14.35363 -14.18653 -14.02044 -13.87820 -13.35489 -13.01591 -12.95743 -12.84057 -12.82537 -12.68580 -12.63766 -12.32962 -12.24958 -12.07798 -11.92648 -11.81252 -11.75542 -11.43776 -11.21686 -10.99415 -10.93603 -10.12492 -9.70459 -9.53344 -9.03162 -7.93935 -5.24116 -0.29534 0.09014 1.42334 1.45679 1.54063 1.55124 1.86273 2.51000 2.54385 3.16027 3.27627 3.38485 3.64823 3.74542 3.83643 3.85467 3.89546 4.05027 4.08983 4.14956 4.21859 4.27765 4.36657 4.54207 4.58550 4.60927 4.68754 4.79748 4.83631 4.86188 4.87471 4.89059 4.96696 4.98077 5.08593 5.10678 5.11799 5.13159 5.22723 5.35142 5.35827 5.42905 5.46622 5.47931 5.52791 5.68178 5.80847 6.26690 6.28647 7.00283 7.31216 8.10191 8.31180 9.29636 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.003076 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.631835 B = 9101.020343 C =10294.851851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.058 4.058 4 C -0.153 4.153 5 C 0.100 3.900 6 F -0.154 7.154 7 C -0.178 4.178 8 C 0.540 3.460 9 O -0.586 6.586 10 N -0.597 5.597 11 C 0.086 3.914 12 C -0.130 4.130 13 C -0.107 4.107 14 C -0.092 4.092 15 H 0.036 0.964 16 C 0.172 3.828 17 H 0.047 0.953 18 C -0.156 4.156 19 N -0.744 5.744 20 C -0.236 4.236 21 H 0.080 0.920 22 C -0.085 4.085 23 N -0.975 5.975 24 Si 0.976 3.024 25 H -0.289 1.289 26 H -0.298 1.298 27 H -0.264 1.264 28 C 0.124 3.876 29 C -0.062 4.062 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.178 0.822 34 H 0.159 0.841 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.368 0.632 45 H 0.248 0.752 46 H 0.043 0.957 47 H 0.087 0.913 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.233 16.516 -6.433 33.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.076 4.076 4 C -0.172 4.172 5 C 0.080 3.920 6 F -0.132 7.132 7 C -0.182 4.182 8 C 0.330 3.670 9 O -0.467 6.467 10 N -0.328 5.328 11 C -0.034 4.034 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.113 4.113 15 H 0.054 0.946 16 C 0.063 3.937 17 H 0.065 0.935 18 C -0.215 4.215 19 N -0.384 5.384 20 C -0.367 4.367 21 H 0.098 0.902 22 C -0.277 4.277 23 N -0.626 5.626 24 Si 0.804 3.196 25 H -0.216 1.216 26 H -0.225 1.225 27 H -0.188 1.188 28 C 0.002 3.998 29 C -0.080 4.080 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.195 0.805 34 H 0.177 0.823 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.201 0.799 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.105 0.895 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -27.585 16.271 -6.198 32.620 hybrid contribution 2.624 -0.605 0.669 2.775 sum -24.961 15.666 -5.529 29.984 Atomic orbital electron populations 1.20907 0.87138 1.04983 1.03816 1.20350 0.98666 0.91547 0.98706 1.21580 0.91833 1.00008 0.94146 1.21419 0.96148 0.96064 1.03524 1.18308 0.76496 0.94968 1.02220 1.91507 1.30645 1.97434 1.93640 1.19946 0.96112 0.90864 1.11321 1.18865 0.83957 0.84688 0.79495 1.90855 1.26521 1.83867 1.45485 1.48141 1.31320 1.09590 1.43776 1.22628 0.86616 1.04385 0.89785 1.21954 1.02552 0.95859 0.96380 1.21625 0.95174 0.97950 0.99754 1.21539 0.98397 0.96191 0.95137 0.94552 1.20490 0.86209 0.93074 0.93896 0.93497 1.22384 0.99239 0.99159 1.00724 1.42843 1.19561 1.34547 1.41489 1.19673 0.97614 1.05933 1.13525 0.90224 1.25666 1.01291 1.01577 0.99123 1.69892 1.28869 1.38403 1.25469 0.85101 0.79087 0.79079 0.76284 1.21621 1.22505 1.18817 1.21467 0.97216 0.83344 0.97816 1.21478 0.89597 1.00923 0.96015 0.89934 0.89160 0.89777 0.80484 0.82316 0.87674 0.87254 0.86363 0.93504 0.89050 0.90570 0.94733 0.93843 0.89587 0.79941 0.94330 0.93873 0.89496 0.82052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.34 10.01 71.24 0.71 0.38 16 2 C -0.09 -0.96 5.87 -19.90 -0.12 -1.08 16 3 C -0.06 -0.60 9.69 22.32 0.22 -0.38 16 4 C -0.15 -2.69 10.01 22.28 0.22 -2.46 16 5 C 0.10 2.84 7.24 22.67 0.16 3.00 16 6 F -0.15 -5.73 16.19 44.97 0.73 -5.01 16 7 C -0.18 -4.91 5.23 -20.05 -0.10 -5.02 16 8 C 0.54 20.11 7.23 86.74 0.63 20.74 16 9 O -0.59 -29.53 15.61 -3.93 -0.06 -29.59 16 10 N -0.60 -18.28 2.98 -823.32 -2.45 -20.74 16 11 C 0.09 1.52 4.84 86.36 0.42 1.93 16 12 C -0.13 -2.21 6.08 30.68 0.19 -2.02 16 13 C -0.11 -2.34 4.78 30.62 0.15 -2.19 16 14 C -0.09 -3.18 2.32 -10.86 -0.03 -3.21 16 15 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 16 C 0.17 6.93 2.72 44.99 0.12 7.05 16 17 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 18 C -0.16 -5.29 8.79 71.98 0.63 -4.65 16 19 N -0.74 -40.44 5.04 -322.92 -1.63 -42.07 16 20 C -0.24 -13.85 9.93 84.03 0.83 -13.02 16 21 H 0.08 4.41 7.83 -2.92 -0.02 4.39 16 22 C -0.09 -5.24 5.50 84.86 0.47 -4.77 16 23 N -0.98 -65.49 13.06 21.65 0.28 -65.21 16 24 Si 0.98 49.11 29.55 68.60 2.03 51.14 16 25 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 27 H -0.26 -12.28 7.11 99.48 0.71 -11.58 16 28 C 0.12 4.56 5.21 86.22 0.45 5.01 16 29 C -0.06 -1.01 6.99 22.52 0.16 -0.85 16 30 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.09 -0.01 8.08 -2.38 -0.02 -0.03 16 32 H 0.08 0.09 8.08 -2.39 -0.02 0.07 16 33 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 34 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 35 H 0.11 1.20 8.09 -2.39 -0.02 1.18 16 36 H 0.11 1.55 4.53 -2.39 -0.01 1.54 16 37 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 1.62 6.50 -2.39 -0.02 1.60 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.04 1.51 6.32 -2.39 -0.02 1.50 16 43 H 0.09 2.12 6.46 -2.39 -0.02 2.10 16 44 H 0.37 22.39 6.16 -92.71 -0.57 21.82 16 45 H 0.25 16.20 8.31 -92.71 -0.77 15.43 16 46 H 0.04 2.12 5.57 -2.39 -0.01 2.10 16 47 H 0.09 2.88 6.16 -2.39 -0.01 2.86 16 48 H 0.16 1.89 6.29 -2.91 -0.02 1.87 16 Total: -1.00 -89.79 377.64 4.42 -85.37 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.41 Total: 27.66 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 5.11 Total: -1.56 kcal Atomic # 7 Polarization: -124.22 SS G_CDS: -3.80 Total: -128.01 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.06 Total: -29.59 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 0.73 Total: -5.01 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 2.03 Total: 51.14 kcal Total: -89.79 4.42 -85.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732525708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.002 kcal (2) G-P(sol) polarization free energy of solvation -89.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds