Wall clock time and date at job start Tue Mar 31 2020 18:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46995 * 2 1 4 4 C 1.50705 * 109.46977 * 240.00516 * 2 1 3 5 5 O 1.21285 * 119.99967 * 355.34911 * 4 2 1 6 6 N 1.34769 * 119.99884 * 175.35377 * 4 2 1 7 7 C 1.47078 * 120.88334 * 5.44744 * 6 4 2 8 8 C 1.53698 * 108.27782 * 128.75639 * 7 6 4 9 9 N 1.46902 * 109.25622 * 54.08226 * 8 7 6 10 10 C 1.46897 * 110.99852 * 172.60934 * 9 8 7 11 11 C 1.50702 * 109.47363 * 294.30264 * 10 9 8 12 12 H 1.08001 * 119.99621 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00325 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99817 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00236 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46984 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47310 * 119.99739 * 15 13 11 18 18 H 1.48498 * 109.47094 * 240.00006 * 15 13 11 19 19 C 1.46902 * 111.27093 * 296.75840 * 9 8 7 20 20 C 1.47080 * 120.88111 * 185.72720 * 6 4 2 21 21 C 1.50695 * 109.47359 * 120.00405 * 2 1 3 22 22 C 1.38242 * 119.97235 * 292.04848 * 21 2 1 23 23 C 1.38199 * 120.02537 * 179.97438 * 22 21 2 24 24 C 1.38461 * 119.97443 * 0.02562 * 23 22 21 25 25 F 1.35099 * 120.02460 * 179.97438 * 24 23 22 26 26 C 1.38453 * 119.94680 * 0.25108 * 24 23 22 27 27 C 1.38199 * 119.97743 * 359.46968 * 26 24 23 28 28 H 1.08999 * 109.46739 * 304.96015 * 1 2 3 29 29 H 1.09007 * 109.47072 * 64.96122 * 1 2 3 30 30 H 1.08994 * 109.46979 * 184.96064 * 1 2 3 31 31 H 1.09001 * 109.46919 * 185.14678 * 3 2 1 32 32 H 1.09002 * 109.47553 * 305.14128 * 3 2 1 33 33 H 1.09001 * 109.47220 * 65.14760 * 3 2 1 34 34 H 1.08997 * 109.63071 * 248.52265 * 7 6 4 35 35 H 1.08998 * 109.62941 * 9.10495 * 7 6 4 36 36 H 1.09004 * 109.65215 * 294.08302 * 8 7 6 37 37 H 1.09002 * 109.42602 * 173.94944 * 8 7 6 38 38 H 1.08999 * 109.47612 * 54.30767 * 10 9 8 39 39 H 1.09007 * 109.47286 * 174.30198 * 10 9 8 40 40 H 0.96998 * 120.00047 * 179.97438 * 14 13 11 41 41 H 1.09003 * 109.49105 * 303.14234 * 19 9 8 42 42 H 1.09001 * 109.49289 * 183.06620 * 19 9 8 43 43 H 1.08999 * 109.62787 * 350.89671 * 20 6 4 44 44 H 1.09007 * 109.63002 * 111.47278 * 20 6 4 45 45 H 1.08003 * 119.98935 * 359.97438 * 22 21 2 46 46 H 1.08006 * 120.01161 * 180.02562 * 23 22 21 47 47 H 1.08002 * 120.01119 * 179.72390 * 26 24 23 48 48 H 1.07993 * 119.99526 * 180.27475 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 1.2474 -1.2444 -1.9854 6 7 3.3537 -0.7522 -1.4922 7 6 4.3307 -0.2162 -0.5324 8 6 5.3987 -1.2923 -0.2799 9 7 5.9642 -1.7246 -1.5649 10 6 7.1084 -2.6230 -1.3609 11 6 8.2321 -1.8639 -0.7035 12 1 8.1087 -0.8185 -0.4619 13 6 9.4181 -2.5036 -0.4116 14 7 9.5685 -3.7765 -0.7063 15 14 10.8107 -1.5629 0.4039 16 1 10.3920 -0.1562 0.6300 17 1 11.1408 -2.1969 1.7055 18 1 12.0066 -1.5876 -0.4761 19 6 4.9429 -2.3566 -2.4109 20 6 3.8567 -1.3297 -2.7479 21 6 2.0324 -0.7105 1.2304 22 6 1.8388 -0.1498 2.4790 23 6 2.2986 -0.8006 3.6081 24 6 2.9539 -2.0145 3.4883 25 9 3.4042 -2.6514 4.5914 26 6 3.1522 -2.5722 2.2367 27 6 2.6865 -1.9224 1.1095 28 1 -0.3633 0.5889 0.8422 29 1 -0.3633 0.4350 -0.9311 30 1 -0.3633 -1.0238 0.0889 31 1 3.1261 1.4439 -0.0922 32 1 1.6034 1.9823 -0.8403 33 1 1.7539 1.9291 0.9325 34 1 4.7979 0.6776 -0.9459 35 1 3.8282 0.0294 0.4031 36 1 4.9464 -2.1464 0.2242 37 1 6.1901 -0.8780 0.3448 38 1 6.8088 -3.4538 -0.7222 39 1 7.4444 -3.0078 -2.3238 40 1 10.4029 -4.2265 -0.5013 41 1 4.4970 -3.1959 -1.8771 42 1 5.4038 -2.7143 -3.3316 43 1 3.0405 -1.8206 -3.2780 44 1 4.2791 -0.5408 -3.3704 45 1 1.3280 0.7972 2.5723 46 1 2.1469 -0.3626 4.5837 47 1 3.6671 -3.5168 2.1417 48 1 2.8371 -2.3594 0.1334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602207607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:07 Heat of formation + Delta-G solvation = -34.650302 kcal Electronic energy + Delta-G solvation = -30611.230429 eV Core-core repulsion = 26581.072845 eV Total energy + Delta-G solvation = -4030.157583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.94212 -41.30490 -38.79855 -37.66881 -35.32290 -34.38577 -32.42828 -31.52496 -30.62457 -29.56894 -28.33550 -27.42010 -25.85030 -24.18452 -23.24524 -22.99960 -22.32859 -21.33452 -20.00135 -18.79266 -17.82826 -17.15464 -16.48525 -16.37702 -16.05833 -15.64930 -15.30018 -15.01034 -14.79234 -14.53383 -14.35249 -14.13241 -13.96321 -13.69481 -13.59307 -13.33100 -13.25622 -13.07508 -12.64099 -12.50452 -12.26254 -12.08249 -12.03252 -11.89543 -11.41957 -11.29855 -11.24726 -11.09448 -11.07466 -10.89858 -10.75702 -10.59172 -10.52714 -9.91789 -9.58513 -9.29732 -9.22620 -8.64402 -8.54089 -8.45616 -7.34490 -6.08744 -4.10678 0.94541 1.08068 2.59938 3.04262 3.27068 3.34972 3.38534 3.38856 4.13127 4.24345 4.34201 4.37177 4.65001 4.71390 4.78647 4.80940 4.85384 5.08100 5.21885 5.25715 5.29520 5.34768 5.36857 5.47810 5.53227 5.59217 5.62201 5.66157 5.69838 5.75088 5.80340 5.85696 5.92844 5.98647 6.00762 6.07960 6.11464 6.24258 6.28079 6.41073 6.45479 6.64529 6.71671 7.18769 7.24465 7.49067 7.71807 7.98432 8.08863 8.18797 8.44453 8.96661 9.54146 11.02091 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010875 B = 0.004330 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.212390 B = 6464.850523 C = 8031.892952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.039 4.039 3 C -0.156 4.156 4 C 0.524 3.476 5 O -0.545 6.545 6 N -0.604 5.604 7 C 0.096 3.904 8 C 0.049 3.951 9 N -0.534 5.534 10 C 0.194 3.806 11 C -0.509 4.509 12 H 0.064 0.936 13 C 0.057 3.943 14 N -0.897 5.897 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.041 3.959 20 C 0.116 3.884 21 C -0.087 4.087 22 C -0.082 4.082 23 C -0.152 4.152 24 C 0.100 3.900 25 F -0.139 7.139 26 C -0.143 4.143 27 C -0.080 4.080 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.030 0.970 37 H 0.095 0.905 38 H -0.009 1.009 39 H 0.031 0.969 40 H 0.261 0.739 41 H 0.025 0.975 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.373 8.877 5.147 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.042 4.042 3 C -0.213 4.213 4 C 0.312 3.688 5 O -0.422 6.422 6 N -0.337 5.337 7 C -0.026 4.026 8 C -0.080 4.080 9 N -0.259 5.259 10 C 0.069 3.931 11 C -0.547 4.547 12 H 0.082 0.918 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.088 4.088 20 C -0.006 4.006 21 C -0.088 4.088 22 C -0.100 4.100 23 C -0.171 4.171 24 C 0.081 3.919 25 F -0.118 7.118 26 C -0.161 4.161 27 C -0.098 4.098 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.048 0.952 37 H 0.113 0.887 38 H 0.008 0.992 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.152 0.848 46 H 0.154 0.846 47 H 0.155 0.845 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.455 8.829 4.539 20.081 hybrid contribution 0.918 -0.586 1.062 1.521 sum -16.537 8.243 5.601 19.308 Atomic orbital electron populations 1.21661 0.90968 1.02977 1.02300 1.19741 0.97878 0.96083 0.90478 1.22276 1.03180 0.92783 1.03097 1.20314 0.81984 0.79803 0.86689 1.90671 1.55070 1.46254 1.50228 1.48232 1.05354 1.59722 1.20400 1.22522 0.89825 0.97680 0.92569 1.22487 0.96272 0.96523 0.92764 1.62083 1.07379 1.42592 1.13890 1.19724 0.86526 0.90112 0.96723 1.21156 0.97817 0.96914 1.38823 0.91804 1.24982 0.98632 0.94887 0.95996 1.69963 1.26126 1.09626 1.47927 0.86466 0.82065 0.80038 0.79007 1.19628 1.21096 1.20988 1.22402 0.92907 0.94597 0.98923 1.21790 0.96593 0.96954 0.85299 1.19531 0.99744 0.95519 0.93979 1.20735 0.98926 0.99765 0.90587 1.21080 1.01166 0.94665 1.00194 1.17738 0.98698 0.92621 0.82827 1.91510 1.87134 1.81445 1.51715 1.21177 1.02164 1.01911 0.90894 1.21168 0.95632 0.94106 0.98906 0.91859 0.91462 0.91786 0.90285 0.91543 0.91099 0.90645 0.88848 0.95200 0.88690 0.99152 0.95055 0.92918 0.95666 0.90052 0.89381 0.90838 0.84782 0.84635 0.84468 0.84875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 7.62 37.16 0.28 -0.91 16 2 C -0.04 -0.42 0.59 -156.81 -0.09 -0.51 16 3 C -0.16 -1.36 7.96 37.16 0.30 -1.06 16 4 C 0.52 7.37 4.96 -10.99 -0.05 7.31 16 5 O -0.54 -9.23 15.43 5.55 0.09 -9.15 16 6 N -0.60 -8.56 2.32 -172.18 -0.40 -8.96 16 7 C 0.10 1.34 3.72 -3.36 -0.01 1.32 16 8 C 0.05 0.86 5.21 -3.46 -0.02 0.84 16 9 N -0.53 -10.71 4.62 -235.45 -1.09 -11.79 16 10 C 0.19 4.83 4.72 -4.98 -0.02 4.80 16 11 C -0.51 -13.65 8.41 -34.44 -0.29 -13.94 16 12 H 0.06 1.69 7.13 -52.49 -0.37 1.31 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 15 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 20 C 0.12 1.72 6.61 -3.60 -0.02 1.70 16 21 C -0.09 -0.95 3.06 -104.62 -0.32 -1.27 16 22 C -0.08 -0.75 8.86 -39.59 -0.35 -1.10 16 23 C -0.15 -1.51 10.03 -39.51 -0.40 -1.91 16 24 C 0.10 1.24 7.30 -39.42 -0.29 0.95 16 25 F -0.14 -1.87 17.27 2.25 0.04 -1.83 16 26 C -0.14 -1.85 9.73 -39.52 -0.38 -2.23 16 27 C -0.08 -1.03 5.98 -39.59 -0.24 -1.27 16 28 H 0.06 0.47 8.05 -51.93 -0.42 0.05 16 29 H 0.07 0.68 8.03 -51.92 -0.42 0.27 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.74 4.60 -51.93 -0.24 0.50 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.47 6.79 -51.93 -0.35 0.11 16 34 H 0.08 1.03 7.90 -51.93 -0.41 0.62 16 35 H 0.09 1.14 3.32 -51.93 -0.17 0.96 16 36 H 0.03 0.54 5.91 -51.93 -0.31 0.23 16 37 H 0.09 1.84 6.67 -51.93 -0.35 1.49 16 38 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 39 H 0.03 0.84 7.97 -51.92 -0.41 0.43 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 1.37 7.99 -51.93 -0.41 0.96 16 43 H 0.09 1.30 7.04 -51.93 -0.37 0.94 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.13 0.86 7.06 -52.48 -0.37 0.49 16 46 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 47 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 48 H 0.13 1.95 5.45 -52.49 -0.29 1.67 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -30.60 368.65 -9.10 -39.70 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.98 Total: 0.90 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -2.03 Total: -5.13 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.75 Total: -46.10 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.60 -9.10 -39.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.048 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds