Wall clock time and date at job start Tue Mar 31 2020 17:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38342 * 119.91535 * 2 1 4 4 C 1.38551 * 120.26662 * 179.97438 * 3 2 1 5 5 F 1.35105 * 119.94914 * 180.02562 * 4 3 2 6 6 C 1.38207 * 120.09397 * 359.97438 * 4 3 2 7 7 C 1.39524 * 119.82615 * 359.97438 * 6 4 3 8 8 C 1.47860 * 120.13414 * 179.97438 * 7 6 4 9 9 O 1.21545 * 120.00342 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99672 * 359.97438 * 8 7 6 11 11 C 1.46499 * 120.00119 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.45407 * 325.02898 * 11 10 8 13 13 C 1.53038 * 109.46173 * 85.00117 * 11 10 8 14 14 C 1.53187 * 109.31330 * 181.37634 * 13 11 10 15 15 N 1.46922 * 108.77666 * 305.36270 * 14 13 11 16 16 C 1.36938 * 120.63314 * 233.58882 * 15 14 13 17 17 H 1.08004 * 119.99730 * 151.76139 * 16 15 14 18 18 C 1.38804 * 119.99905 * 331.75847 * 16 15 14 19 19 N 1.31627 * 120.00019 * 160.49235 * 18 16 15 20 20 Si 1.86797 * 120.00226 * 340.48765 * 18 16 15 21 21 H 1.48509 * 109.46954 * 95.15574 * 20 18 16 22 22 H 1.48497 * 109.47514 * 215.15800 * 20 18 16 23 23 H 1.48498 * 109.47259 * 335.15869 * 20 18 16 24 24 C 1.46932 * 118.73875 * 53.86117 * 15 14 13 25 25 C 1.53038 * 109.45115 * 205.06622 * 11 10 8 26 26 C 1.52997 * 109.49545 * 298.56837 * 25 11 10 27 27 C 1.53001 * 109.49848 * 58.66771 * 25 11 10 28 28 C 1.37950 * 119.91124 * 180.22556 * 2 1 3 29 29 H 1.09005 * 109.46833 * 90.00403 * 1 2 3 30 30 H 1.09000 * 109.47371 * 210.00034 * 1 2 3 31 31 H 1.08998 * 109.47268 * 330.00357 * 1 2 3 32 32 H 1.07995 * 119.86419 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.08710 * 180.02562 * 6 4 3 34 34 H 0.96999 * 120.00218 * 0.02562 * 10 8 7 35 35 H 1.08999 * 109.49597 * 61.42284 * 13 11 10 36 36 H 1.09005 * 109.49530 * 301.32370 * 13 11 10 37 37 H 1.09000 * 109.59016 * 185.57774 * 14 13 11 38 38 H 1.09002 * 109.70844 * 65.22442 * 14 13 11 39 39 H 0.97000 * 119.99842 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.58641 * 65.92667 * 24 15 14 41 41 H 1.08999 * 109.58697 * 186.35333 * 24 15 14 42 42 H 1.09002 * 109.47270 * 60.00323 * 26 25 11 43 43 H 1.08997 * 109.47051 * 179.97438 * 26 25 11 44 44 H 1.09000 * 109.47535 * 299.99884 * 26 25 11 45 45 H 1.09003 * 109.47216 * 60.00240 * 27 25 11 46 46 H 1.09002 * 109.47025 * 180.02562 * 27 25 11 47 47 H 1.09002 * 109.47123 * 300.00218 * 27 25 11 48 48 H 1.08000 * 120.05126 * 0.02814 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1991 0.0000 4 6 3.5824 1.2076 0.0005 5 9 4.2497 2.3823 0.0011 6 6 4.2827 0.0161 0.0016 7 6 3.5908 -1.1955 0.0027 8 6 4.3332 -2.4742 0.0033 9 8 3.7281 -3.5283 0.0037 10 7 5.6810 -2.4709 0.0022 11 6 6.4166 -3.7378 0.0022 12 1 5.8710 -4.4744 0.5921 13 6 6.5628 -4.2426 -1.4351 14 6 7.3022 -5.5842 -1.4282 15 7 8.5756 -5.4187 -0.7144 16 6 9.7575 -5.7828 -1.3024 17 1 10.6741 -5.2817 -1.0280 18 6 9.7776 -6.7960 -2.2509 19 7 10.7911 -6.8971 -3.0846 20 14 8.3664 -8.0163 -2.3441 21 1 7.3892 -7.5657 -3.3677 22 1 8.8924 -9.3540 -2.7169 23 1 7.6954 -8.0991 -1.0219 24 6 8.5564 -4.8606 0.6447 25 6 7.8033 -3.5219 0.6124 26 6 8.5826 -2.5140 -0.2347 27 6 7.6562 -2.9862 2.0380 28 6 2.1949 -1.1957 -0.0047 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6533 2.1323 -0.0004 33 1 5.3627 0.0228 0.0024 34 1 6.1639 -1.6297 0.0015 35 1 7.1297 -3.5177 -2.0193 36 1 5.5749 -4.3739 -1.8768 37 1 7.4963 -5.8997 -2.4533 38 1 6.6953 -6.3358 -0.9234 39 1 10.8049 -7.6049 -3.7477 40 1 8.0486 -5.5525 1.3166 41 1 9.5782 -4.6985 0.9876 42 1 8.0447 -1.5663 -0.2582 43 1 9.5700 -2.3602 0.2005 44 1 8.6882 -2.8971 -1.2497 45 1 7.1022 -3.7056 2.6411 46 1 8.6442 -2.8322 2.4720 47 1 7.1175 -2.0389 2.0164 48 1 1.6543 -2.1307 -0.0088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941051663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:03 Heat of formation + Delta-G solvation = -38.798337 kcal Electronic energy + Delta-G solvation = -29578.409338 eV Core-core repulsion = 25548.071882 eV Total energy + Delta-G solvation = -4030.337456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.24901 -40.61855 -39.31400 -37.99170 -34.93074 -33.67183 -32.88943 -31.74455 -31.12954 -30.09954 -27.50314 -27.00955 -26.42578 -25.53523 -23.81251 -22.29122 -22.08529 -21.21287 -20.25958 -18.85210 -17.72559 -17.04279 -16.79933 -16.56103 -16.19576 -16.00719 -15.77404 -14.98396 -14.88784 -14.39706 -14.34148 -14.03053 -13.96604 -13.89565 -13.73453 -13.49217 -13.27136 -12.79134 -12.53766 -12.40324 -12.15276 -12.11873 -12.00141 -11.87337 -11.79974 -11.67781 -11.33321 -11.27174 -10.85023 -10.57886 -10.42469 -10.18527 -10.04993 -9.93224 -9.69725 -9.49904 -9.38081 -9.07656 -8.82786 -8.61190 -6.97012 -5.95099 -3.32560 0.37914 0.74615 2.57609 3.08506 3.34849 3.45221 3.50620 3.53698 3.76851 4.20341 4.30678 4.53605 4.65498 4.72941 4.79940 4.87458 4.91127 4.99758 5.16406 5.18400 5.20206 5.22245 5.40162 5.48179 5.60017 5.65113 5.67589 5.69033 5.78862 5.82698 5.86156 5.97300 5.99948 6.05466 6.15697 6.21535 6.27978 6.36872 6.41104 6.41486 6.58963 6.61577 6.66177 6.70699 6.74093 6.97400 7.50380 7.95812 8.16824 8.32436 8.92968 9.71593 10.09057 11.20662 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.002984 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.585900 B = 9381.990950 C =10059.945907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.065 4.065 3 C -0.135 4.135 4 C 0.098 3.902 5 F -0.136 7.136 6 C -0.130 4.130 7 C -0.094 4.094 8 C 0.554 3.446 9 O -0.532 6.532 10 N -0.713 5.713 11 C 0.162 3.838 12 H 0.085 0.915 13 C -0.145 4.145 14 C 0.129 3.871 15 N -0.603 5.603 16 C -0.258 4.258 17 H 0.086 0.914 18 C 0.024 3.976 19 N -0.909 5.909 20 Si 0.881 3.119 21 H -0.289 1.289 22 H -0.304 1.304 23 H -0.268 1.268 24 C 0.163 3.837 25 C -0.090 4.090 26 C -0.133 4.133 27 C -0.137 4.137 28 C -0.073 4.073 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.396 0.604 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.028 0.972 39 H 0.262 0.738 40 H 0.025 0.975 41 H 0.068 0.932 42 H 0.033 0.967 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.047 0.953 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.433 17.381 8.349 25.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.065 4.065 3 C -0.154 4.154 4 C 0.079 3.921 5 F -0.115 7.115 6 C -0.149 4.149 7 C -0.098 4.098 8 C 0.341 3.659 9 O -0.409 6.409 10 N -0.364 5.364 11 C 0.059 3.941 12 H 0.103 0.897 13 C -0.185 4.185 14 C 0.003 3.997 15 N -0.326 5.326 16 C -0.387 4.387 17 H 0.103 0.897 18 C -0.175 4.175 19 N -0.552 5.552 20 Si 0.712 3.288 21 H -0.217 1.217 22 H -0.232 1.232 23 H -0.193 1.193 24 C 0.036 3.964 25 C -0.093 4.093 26 C -0.190 4.190 27 C -0.195 4.195 28 C -0.092 4.092 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.233 0.767 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.698 16.544 8.221 25.584 hybrid contribution -0.300 -0.012 -0.244 0.387 sum -17.998 16.532 7.978 25.708 Atomic orbital electron populations 1.20840 0.89825 1.03489 1.03073 1.19746 0.96820 0.91752 0.98178 1.21201 0.92208 0.99530 1.02495 1.17471 0.90198 0.81081 1.03382 1.91532 1.80660 1.45335 1.93944 1.21286 1.00823 0.90793 1.02013 1.19901 0.94320 0.92653 1.02900 1.18110 0.82516 0.88314 0.77010 1.90790 1.68371 1.32153 1.49626 1.46243 1.05638 1.10601 1.73904 1.21029 0.91354 0.84197 0.97513 0.89697 1.22469 1.00239 1.00095 0.95667 1.21307 0.87183 0.93688 0.97492 1.44361 1.02881 1.73776 1.11590 1.18886 0.86427 1.13941 1.19401 0.89652 1.25293 0.96540 0.97842 0.97789 1.69825 1.32170 1.33971 1.19234 0.86966 0.82260 0.81389 0.78215 1.21692 1.23215 1.19322 1.21035 0.98402 0.90081 0.86904 1.21443 0.94230 0.99028 0.94583 1.21800 0.99012 0.96136 1.02044 1.21812 1.01500 1.00277 0.95941 1.21265 0.92602 0.98748 0.96585 0.90437 0.90716 0.91039 0.84330 0.84370 0.76737 0.91105 0.92335 0.90848 0.95393 0.92790 0.95667 0.91310 0.94755 0.92675 0.90370 0.92822 0.92374 0.93364 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.01 36.00 0.36 -0.25 16 2 C -0.06 -0.52 5.87 -104.69 -0.61 -1.13 16 3 C -0.14 -1.08 9.67 -39.43 -0.38 -1.46 16 4 C 0.10 0.92 7.29 -39.48 -0.29 0.63 16 5 F -0.14 -1.36 17.26 2.25 0.04 -1.32 16 6 C -0.13 -1.26 9.52 -39.11 -0.37 -1.64 16 7 C -0.09 -1.07 5.87 -104.97 -0.62 -1.68 16 8 C 0.55 7.78 7.74 -12.32 -0.10 7.69 16 9 O -0.53 -9.30 16.01 5.33 0.09 -9.21 16 10 N -0.71 -9.34 4.24 -54.71 -0.23 -9.57 16 11 C 0.16 2.57 1.57 -67.89 -0.11 2.46 16 12 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 13 C -0.14 -2.63 5.31 -26.61 -0.14 -2.77 16 14 C 0.13 2.83 4.19 -3.72 -0.02 2.81 16 15 N -0.60 -13.74 2.19 -172.06 -0.38 -14.12 16 16 C -0.26 -6.98 10.04 -15.06 -0.15 -7.13 16 17 H 0.09 2.46 8.06 -52.48 -0.42 2.03 16 18 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 19 N -0.91 -27.60 13.97 55.49 0.78 -26.83 16 20 Si 0.88 22.47 24.35 -169.99 -4.14 18.33 16 21 H -0.29 -7.21 6.73 56.52 0.38 -6.83 16 22 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 23 H -0.27 -6.73 6.41 56.52 0.36 -6.37 16 24 C 0.16 3.04 5.24 -3.48 -0.02 3.02 16 25 C -0.09 -1.36 0.56 -154.17 -0.09 -1.45 16 26 C -0.13 -1.95 7.84 37.16 0.29 -1.66 16 27 C -0.14 -1.69 8.31 37.16 0.31 -1.39 16 28 C -0.07 -0.74 9.24 -39.18 -0.36 -1.10 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 32 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.14 1.14 6.40 -52.49 -0.34 0.81 16 34 H 0.40 4.30 4.69 -40.82 -0.19 4.11 16 35 H 0.07 1.29 6.34 -51.93 -0.33 0.96 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.76 4.59 -51.93 -0.24 1.52 16 38 H 0.03 0.62 6.93 -51.93 -0.36 0.26 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 42 H 0.03 0.41 6.58 -51.93 -0.34 0.06 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.39 5.97 -51.93 -0.31 1.08 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.52 7.36 -51.93 -0.38 0.14 16 48 H 0.14 1.46 7.65 -52.49 -0.40 1.06 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -31.58 373.24 -7.72 -39.30 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.11 Total: 2.25 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -2.38 Total: -4.44 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.17 Total: -50.52 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.14 Total: 18.33 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.58 -7.72 -39.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941051663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.499 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds