Wall clock time and date at job start Tue Mar 31 2020 18:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47359 * 2 1 4 4 C 1.50696 * 109.46837 * 120.00046 * 2 1 3 5 5 O 1.21283 * 120.00203 * 118.86993 * 4 2 1 6 6 N 1.34775 * 120.00285 * 298.86347 * 4 2 1 7 7 C 1.46504 * 120.00132 * 180.02562 * 6 4 2 8 8 H 1.08994 * 109.52280 * 34.92464 * 7 6 4 9 9 C 1.53038 * 109.49462 * 155.00159 * 7 6 4 10 10 C 1.53043 * 109.53469 * 181.31372 * 9 7 6 11 11 C 1.53192 * 109.31616 * 298.63419 * 10 9 7 12 12 N 1.46932 * 108.77297 * 54.63461 * 11 10 9 13 13 C 1.36935 * 120.62837 * 126.36868 * 12 11 10 14 14 H 1.07995 * 119.99939 * 205.56465 * 13 12 11 15 15 C 1.38813 * 120.00213 * 25.56339 * 13 12 11 16 16 N 1.31617 * 119.99669 * 34.56513 * 15 13 12 17 17 Si 1.86796 * 119.99867 * 214.29092 * 15 13 12 18 18 H 1.48496 * 109.47009 * 180.27445 * 17 15 13 19 19 H 1.48499 * 109.47281 * 300.27381 * 17 15 13 20 20 H 1.48500 * 109.47317 * 60.27763 * 17 15 13 21 21 C 1.46926 * 118.73633 * 306.64545 * 12 11 10 22 22 C 1.50700 * 109.46974 * 240.00010 * 2 1 3 23 23 C 1.38269 * 119.98422 * 126.35824 * 22 2 1 24 24 C 1.38225 * 120.04697 * 179.76589 * 23 22 2 25 25 C 1.38224 * 120.02752 * 0.50968 * 24 23 22 26 26 C 1.38440 * 119.97012 * 359.74120 * 25 24 23 27 27 F 1.35101 * 120.02063 * 179.97438 * 26 25 24 28 28 C 1.38172 * 119.98691 * 306.63087 * 22 2 1 29 29 H 1.09001 * 109.47673 * 300.00231 * 1 2 3 30 30 H 1.09007 * 109.47218 * 60.00060 * 1 2 3 31 31 H 1.09002 * 109.47542 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47644 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47321 * 300.00399 * 3 2 1 34 34 H 1.09005 * 109.47469 * 59.99772 * 3 2 1 35 35 H 0.96996 * 119.99840 * 0.02562 * 6 4 2 36 36 H 1.08996 * 109.46118 * 61.29897 * 9 7 6 37 37 H 1.08992 * 109.45195 * 301.32774 * 9 7 6 38 38 H 1.09007 * 109.49518 * 178.68236 * 10 9 7 39 39 H 1.08997 * 109.49622 * 58.59134 * 10 9 7 40 40 H 1.08999 * 109.58864 * 294.85039 * 11 10 9 41 41 H 1.08997 * 109.58586 * 174.42029 * 11 10 9 42 42 H 0.97000 * 120.00240 * 2.39766 * 16 15 13 43 43 H 1.09006 * 109.58359 * 173.14453 * 21 12 11 44 44 H 1.09001 * 109.58540 * 293.56743 * 21 12 11 45 45 H 1.07993 * 119.97548 * 0.02562 * 23 22 2 46 46 H 1.08007 * 119.98936 * 180.25310 * 24 23 22 47 47 H 1.07999 * 120.01090 * 179.72922 * 25 24 23 48 48 H 1.08000 * 120.01573 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2304 5 8 2.7124 -1.7083 1.1193 6 7 1.7256 -0.2368 2.4544 7 6 2.2144 -0.9271 3.6506 8 1 3.2048 -1.3378 3.4550 9 6 2.2927 0.0625 4.8153 10 6 2.8342 -0.6500 6.0568 11 6 1.8795 -1.7824 6.4479 12 7 1.6849 -2.6596 5.2854 13 6 1.9029 -4.0079 5.3846 14 1 2.1652 -4.5785 4.5060 15 6 1.7869 -4.6412 6.6144 16 7 0.8872 -4.2313 7.4832 17 14 2.9022 -6.0799 7.0329 18 1 2.5755 -6.5804 8.3923 19 1 2.6994 -7.1680 6.0429 20 1 4.3186 -5.6352 6.9965 21 6 1.2580 -2.0619 4.0129 22 6 2.0322 -0.7104 -1.2305 23 6 2.9320 -0.0826 -2.0720 24 6 3.3972 -0.7348 -3.1984 25 6 2.9554 -2.0116 -3.4904 26 6 2.0506 -2.6391 -2.6512 27 9 1.6177 -3.8868 -2.9359 28 6 1.5892 -1.9867 -1.5203 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.1813 0.5611 2.5433 36 1 1.2977 0.4542 5.0265 37 1 2.9575 0.8842 4.5493 38 1 2.9118 0.0610 6.8794 39 1 3.8188 -1.0633 5.8385 40 1 0.9209 -1.3630 6.7537 41 1 2.3091 -2.3549 7.2699 42 1 0.2822 -3.5096 7.2510 43 1 1.2776 -2.8189 3.2289 44 1 0.2478 -1.6657 4.1161 45 1 3.2746 0.9165 -1.8468 46 1 4.1031 -0.2451 -3.8529 47 1 3.3158 -2.5192 -4.3728 48 1 0.8827 -2.4750 -0.8654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008510607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:00 Heat of formation + Delta-G solvation = -46.300693 kcal Electronic energy + Delta-G solvation = -29542.101789 eV Core-core repulsion = 25511.439007 eV Total energy + Delta-G solvation = -4030.662782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -48.92716 -40.73670 -38.91786 -37.49619 -35.35597 -34.47191 -32.51368 -31.01421 -30.45092 -30.00466 -28.54878 -27.66640 -25.05394 -24.39745 -23.05187 -22.51630 -22.13666 -21.23479 -19.79024 -19.18523 -17.67566 -17.31351 -16.89110 -16.34407 -16.09490 -15.85010 -15.60201 -14.96138 -14.67344 -14.31151 -14.16384 -14.09275 -13.95361 -13.57661 -13.51577 -13.28678 -12.83197 -12.68778 -12.59933 -12.44224 -12.38434 -12.24998 -12.08454 -12.02107 -11.96124 -11.27683 -11.17836 -10.99591 -10.76821 -10.62823 -10.38433 -10.11387 -10.05153 -9.97047 -9.53675 -9.41195 -9.07453 -8.90965 -8.79282 -8.17834 -6.88689 -6.16072 -3.13689 0.99813 1.09678 2.76696 3.17040 3.53990 3.57253 3.58026 3.75673 4.00433 4.28742 4.45351 4.60246 4.64645 4.76828 4.83483 4.88485 4.98286 5.16160 5.18848 5.25852 5.28558 5.35976 5.40307 5.41378 5.49994 5.55196 5.58772 5.67542 5.75979 5.85626 5.89689 5.92818 6.00716 6.03276 6.11191 6.14111 6.32327 6.35704 6.41196 6.53773 6.58000 6.69974 6.75538 6.87857 7.03328 7.14287 7.67616 8.08175 8.39668 8.59039 9.11807 9.87641 10.31171 11.17714 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013476 B = 0.003216 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.264485 B = 8705.091274 C =10080.070465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C -0.143 4.143 4 C 0.519 3.481 5 O -0.524 6.524 6 N -0.720 5.720 7 C 0.127 3.873 8 H 0.086 0.914 9 C -0.114 4.114 10 C -0.134 4.134 11 C 0.149 3.851 12 N -0.592 5.592 13 C -0.361 4.361 14 H 0.057 0.943 15 C -0.017 4.017 16 N -0.902 5.902 17 Si 1.056 2.944 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.293 1.293 21 C 0.146 3.854 22 C -0.029 4.029 23 C -0.127 4.127 24 C -0.094 4.094 25 C -0.157 4.157 26 C 0.099 3.901 27 F -0.140 7.140 28 C -0.122 4.122 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.393 0.607 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.017 0.983 41 H 0.077 0.923 42 H 0.268 0.732 43 H 0.058 0.942 44 H 0.013 0.987 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.132 0.868 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.150 15.796 -18.581 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.048 4.048 3 C -0.200 4.200 4 C 0.303 3.697 5 O -0.399 6.399 6 N -0.371 5.371 7 C 0.021 3.979 8 H 0.104 0.896 9 C -0.152 4.152 10 C -0.174 4.174 11 C 0.023 3.977 12 N -0.316 5.316 13 C -0.490 4.490 14 H 0.075 0.925 15 C -0.221 4.221 16 N -0.540 5.540 17 Si 0.886 3.114 18 H -0.212 1.212 19 H -0.219 1.219 20 H -0.220 1.220 21 C 0.018 3.982 22 C -0.029 4.029 23 C -0.145 4.145 24 C -0.112 4.112 25 C -0.176 4.176 26 C 0.079 3.921 27 F -0.119 7.119 28 C -0.141 4.141 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.227 0.773 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.035 0.965 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.031 0.969 45 H 0.150 0.850 46 H 0.149 0.851 47 H 0.150 0.850 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.014 13.853 -17.460 22.379 hybrid contribution -0.725 1.202 -1.249 1.879 sum 1.290 15.055 -18.709 24.048 Atomic orbital electron populations 1.21908 0.91379 1.03395 1.03054 1.19761 0.97587 0.96136 0.91281 1.21956 1.01971 0.92956 1.03113 1.20211 0.80464 0.84781 0.84203 1.90773 1.37712 1.24978 1.86401 1.46087 1.54504 1.30713 1.05751 1.21625 1.00212 0.93594 0.82440 0.89569 1.21664 1.00838 0.97219 0.95521 1.22055 1.00891 0.98597 0.95845 1.20953 0.95009 0.90398 0.91315 1.44054 1.78411 1.03767 1.05397 1.19899 1.47678 0.83841 0.97535 0.92505 1.25744 0.98869 1.02640 0.94801 1.70822 1.14635 1.27871 1.40716 0.83647 0.76276 0.75551 0.75948 1.21178 1.21881 1.22013 1.21063 0.93436 0.93694 0.89991 1.19116 0.96087 0.93359 0.94357 1.21176 0.97579 1.00833 0.94941 1.20929 0.99169 0.93909 0.97188 1.21127 0.99112 0.96607 1.00731 1.17655 0.97662 0.80634 0.96111 1.91504 1.88410 1.38631 1.93352 1.20943 1.01905 0.95160 0.96094 0.91363 0.91082 0.91547 0.91484 0.90909 0.91482 0.77291 0.92266 0.92797 0.92475 0.92000 0.96534 0.90449 0.92203 0.92339 0.96874 0.84991 0.85084 0.84957 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.11 37.15 0.30 -0.92 16 2 C -0.04 -0.46 0.71 -156.82 -0.11 -0.57 16 3 C -0.14 -1.05 7.04 37.16 0.26 -0.79 16 4 C 0.52 7.64 6.35 -10.99 -0.07 7.57 16 5 O -0.52 -10.32 15.08 5.56 0.08 -10.24 16 6 N -0.72 -9.83 4.87 -53.91 -0.26 -10.10 16 7 C 0.13 2.23 2.59 -68.03 -0.18 2.06 16 8 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 9 C -0.11 -1.76 5.36 -26.69 -0.14 -1.91 16 10 C -0.13 -2.42 6.08 -26.61 -0.16 -2.59 16 11 C 0.15 3.43 4.92 -3.71 -0.02 3.41 16 12 N -0.59 -15.07 2.87 -172.58 -0.49 -15.57 16 13 C -0.36 -10.44 9.40 -15.06 -0.14 -10.58 16 14 H 0.06 1.71 8.01 -52.49 -0.42 1.29 16 15 C -0.02 -0.50 4.40 -17.43 -0.08 -0.58 16 16 N -0.90 -27.11 12.61 55.49 0.70 -26.41 16 17 Si 1.06 25.85 30.03 -169.99 -5.11 20.75 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 C 0.15 3.18 6.06 -3.93 -0.02 3.16 16 22 C -0.03 -0.33 4.28 -104.64 -0.45 -0.78 16 23 C -0.13 -1.24 9.00 -39.57 -0.36 -1.60 16 24 C -0.09 -0.86 10.04 -39.59 -0.40 -1.26 16 25 C -0.16 -1.66 10.03 -39.51 -0.40 -2.06 16 26 C 0.10 1.29 7.30 -39.42 -0.29 1.00 16 27 F -0.14 -1.98 17.27 2.25 0.04 -1.94 16 28 C -0.12 -1.64 8.24 -39.52 -0.33 -1.96 16 29 H 0.07 0.51 7.63 -51.93 -0.40 0.11 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.67 7.05 -51.93 -0.37 0.30 16 32 H 0.07 0.52 7.22 -51.93 -0.37 0.15 16 33 H 0.07 0.41 7.81 -51.93 -0.41 0.00 16 34 H 0.07 0.41 7.50 -51.93 -0.39 0.02 16 35 H 0.39 4.04 7.44 -40.82 -0.30 3.74 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.02 0.38 8.07 -51.93 -0.42 -0.04 16 41 H 0.08 1.99 6.44 -51.93 -0.33 1.66 16 42 H 0.27 8.11 7.38 -40.82 -0.30 7.81 16 43 H 0.06 1.41 7.92 -51.93 -0.41 1.00 16 44 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.13 0.97 5.91 -52.49 -0.31 0.66 16 46 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 47 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 48 H 0.13 1.86 7.19 -52.49 -0.38 1.48 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -34.07 382.06 -9.23 -43.30 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.38 Total: 2.85 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -2.57 Total: -8.40 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.06 Total: -52.07 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.11 Total: 20.75 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.07 -9.23 -43.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008510607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.000 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds