Wall clock time and date at job start Tue Mar 31 2020 18:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47065 * 2 1 4 4 H 1.08997 * 109.52316 * 305.08172 * 3 2 1 5 5 C 1.53187 * 109.49820 * 65.16480 * 3 2 1 6 6 N 1.46925 * 108.77491 * 174.58746 * 5 3 2 7 7 C 1.34779 * 120.63301 * 126.41052 * 6 5 3 8 8 O 1.21558 * 119.99788 * 354.26561 * 7 6 5 9 9 C 1.47846 * 120.00624 * 174.26076 * 7 6 5 10 10 C 1.39599 * 120.13189 * 305.90633 * 9 7 6 11 11 C 1.37944 * 119.90613 * 179.73743 * 10 9 7 12 12 C 1.38350 * 120.16890 * 0.50849 * 11 10 9 13 13 C 1.38547 * 120.26917 * 359.76793 * 12 11 10 14 14 F 1.35105 * 119.94901 * 180.02562 * 13 12 11 15 15 C 1.38207 * 120.09566 * 359.97375 * 13 12 11 16 16 C 1.50701 * 120.09066 * 179.97438 * 15 13 12 17 17 C 1.46923 * 118.73984 * 306.38908 * 6 5 3 18 18 C 1.53185 * 108.77629 * 53.61036 * 17 6 5 19 19 C 1.53040 * 109.31348 * 305.36589 * 18 17 6 20 20 H 1.09005 * 109.46219 * 301.35887 * 19 18 17 21 21 N 1.46497 * 109.46427 * 181.38688 * 19 18 17 22 22 C 1.36931 * 120.00269 * 85.00007 * 21 19 18 23 23 H 1.07996 * 120.00197 * 359.97438 * 22 21 19 24 24 C 1.38814 * 120.00338 * 180.02562 * 22 21 19 25 25 N 1.31623 * 120.00000 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00243 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47316 * 59.99265 * 26 24 22 28 28 H 1.48498 * 109.47196 * 299.99330 * 26 24 22 29 29 H 1.48505 * 109.47287 * 179.97438 * 26 24 22 30 30 H 1.08996 * 109.46689 * 299.99442 * 1 2 3 31 31 H 1.08996 * 109.47299 * 59.99900 * 1 2 3 32 32 H 1.09005 * 109.46885 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46948 * 239.99943 * 2 1 3 34 34 H 1.08996 * 109.47299 * 120.00100 * 2 1 3 35 35 H 1.08997 * 109.58825 * 54.79837 * 5 3 2 36 36 H 1.09004 * 109.58278 * 294.37425 * 5 3 2 37 37 H 1.08001 * 120.04747 * 359.97438 * 10 9 7 38 38 H 1.07996 * 119.91830 * 180.25636 * 11 10 9 39 39 H 1.08004 * 119.86320 * 179.74444 * 12 11 10 40 40 H 1.08997 * 109.47101 * 274.91495 * 16 15 13 41 41 H 1.08999 * 109.46877 * 34.91658 * 16 15 13 42 42 H 1.09004 * 109.46935 * 154.91419 * 16 15 13 43 43 H 1.09004 * 109.58435 * 293.82219 * 17 6 5 44 44 H 1.09005 * 109.70748 * 173.46769 * 17 6 5 45 45 H 1.08998 * 109.50109 * 185.41467 * 18 17 6 46 46 H 1.08995 * 109.52746 * 65.33202 * 18 17 6 47 47 H 0.97002 * 119.99845 * 265.00493 * 21 19 18 48 48 H 0.96998 * 119.99625 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 -0.8407 5 6 1.6386 2.1267 1.3105 6 7 2.2451 3.4643 1.3506 7 6 1.4858 4.5564 1.5681 8 8 0.2762 4.4533 1.6293 9 6 2.1240 5.8799 1.7322 10 6 3.1251 6.0615 2.6880 11 6 3.7212 7.2969 2.8335 12 6 3.3221 8.3590 2.0418 13 6 2.3252 8.1883 1.0950 14 9 1.9408 9.2298 0.3250 15 6 1.7242 6.9539 0.9362 16 6 0.6395 6.7685 -0.0934 17 6 3.6952 3.5888 1.1497 18 6 4.0736 2.8882 -0.1589 19 6 3.5652 1.4451 -0.1258 20 1 4.0007 0.9261 0.7281 21 7 3.9542 0.7620 -1.3621 22 6 5.1917 0.1851 -1.4654 23 1 5.8812 0.2339 -0.6356 24 6 5.5604 -0.4616 -2.6370 25 7 4.7203 -0.5208 -3.6485 26 14 7.2484 -1.2493 -2.7776 27 1 7.3971 -2.2915 -1.7304 28 1 8.2953 -0.2120 -2.5959 29 1 7.3944 -1.8710 -4.1184 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.9965 1.5377 2.1548 36 1 0.5533 2.2160 1.3585 37 1 3.4352 5.2348 3.3101 38 1 4.4986 7.4365 3.5700 39 1 3.7893 9.3253 2.1628 40 1 -0.3199 7.0622 0.3327 41 1 0.8552 7.3878 -0.9640 42 1 0.5985 5.7214 -0.3935 43 1 4.2209 3.1189 1.9811 44 1 3.9693 4.6422 1.0927 45 1 5.1577 2.8894 -0.2720 46 1 3.6197 3.4146 -0.9984 47 1 3.3350 0.7186 -2.1075 48 1 3.8437 -0.1121 -3.5753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037855421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:36 Heat of formation + Delta-G solvation = -53.236842 kcal Electronic energy + Delta-G solvation = -29702.612064 eV Core-core repulsion = 25671.648508 eV Total energy + Delta-G solvation = -4030.963556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.16304 -40.78108 -38.93390 -37.67940 -34.97303 -34.02177 -33.11614 -31.91129 -31.21333 -29.46462 -28.60793 -27.34777 -25.34557 -23.91582 -23.75178 -22.66091 -21.99979 -20.99458 -20.16012 -19.36335 -17.88716 -17.32217 -16.95029 -16.59515 -16.16263 -15.92196 -15.81653 -15.08324 -14.96320 -14.37733 -14.10163 -13.88245 -13.65313 -13.57975 -13.50968 -13.47546 -13.31572 -13.13130 -12.92731 -12.61726 -12.34578 -12.14864 -11.92209 -11.83582 -11.74382 -11.58131 -11.40058 -10.95470 -10.77767 -10.62826 -10.36226 -10.28775 -10.03090 -9.92513 -9.88783 -9.22792 -9.19598 -8.98086 -8.90071 -8.59229 -7.06784 -6.12685 -3.13101 0.56811 0.82048 2.49389 2.86388 3.27886 3.48946 3.51900 3.69673 3.91750 4.22879 4.41352 4.55800 4.59392 4.63388 4.91563 4.92909 5.09031 5.12375 5.24484 5.27790 5.33279 5.37176 5.47110 5.47871 5.54003 5.56186 5.60766 5.62655 5.75678 5.77550 5.89009 5.90692 5.92694 5.99059 6.01547 6.04401 6.15146 6.24272 6.27756 6.34129 6.43719 6.48880 6.55426 6.71168 6.81316 6.93983 7.34342 7.76823 8.03786 8.72483 9.18928 10.05424 10.20759 11.35339 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.003255 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.029898 B = 8599.144484 C = 9657.844543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.597 5.597 7 C 0.561 3.439 8 O -0.535 6.535 9 C -0.095 4.095 10 C -0.094 4.094 11 C -0.101 4.101 12 C -0.133 4.133 13 C 0.092 3.908 14 F -0.135 7.135 15 C -0.071 4.071 16 C -0.116 4.116 17 C 0.104 3.896 18 C -0.151 4.151 19 C 0.189 3.811 20 H 0.049 0.951 21 N -0.731 5.731 22 C -0.331 4.331 23 H 0.064 0.936 24 C -0.043 4.043 25 N -0.943 5.943 26 Si 1.078 2.922 27 H -0.296 1.296 28 H -0.296 1.296 29 H -0.285 1.285 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.367 0.633 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.522 14.640 14.033 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.087 0.913 5 C -0.003 4.003 6 N -0.329 5.329 7 C 0.349 3.651 8 O -0.412 6.412 9 C -0.099 4.099 10 C -0.113 4.113 11 C -0.119 4.119 12 C -0.152 4.152 13 C 0.073 3.927 14 F -0.113 7.113 15 C -0.073 4.073 16 C -0.173 4.173 17 C -0.019 4.019 18 C -0.192 4.192 19 C 0.079 3.921 20 H 0.067 0.933 21 N -0.373 5.373 22 C -0.462 4.462 23 H 0.082 0.918 24 C -0.241 4.241 25 N -0.588 5.588 26 Si 0.909 3.091 27 H -0.223 1.223 28 H -0.223 1.223 29 H -0.211 1.211 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.200 0.800 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.991 13.711 13.175 19.430 hybrid contribution -0.999 1.178 0.688 1.691 sum -4.990 14.889 13.863 20.947 Atomic orbital electron populations 1.21846 0.96625 1.01160 1.01392 1.21435 0.94505 0.95584 1.03359 1.21802 0.97703 0.96287 0.96788 0.91289 1.21793 0.99556 0.81044 0.97908 1.48109 1.08778 1.06530 1.69498 1.18176 0.86529 0.83638 0.76785 1.90784 1.13459 1.85886 1.51111 1.19659 0.98066 0.93662 0.98469 1.21339 0.94346 0.98249 0.97381 1.20933 0.99959 0.91760 0.99239 1.21294 0.97108 1.00939 0.95884 1.17359 0.97754 0.84065 0.93540 1.91502 1.90297 1.55984 1.73549 1.19909 0.98065 0.91080 0.98251 1.20793 0.96305 1.03794 0.96382 1.21993 0.79098 1.01598 0.99261 1.22661 1.02330 0.99104 0.95075 1.20121 0.90615 0.90454 0.90923 0.93281 1.42408 1.16557 1.65625 1.12689 1.20000 0.92467 1.32104 1.01586 0.91834 1.25717 1.05774 1.00225 0.92381 1.70886 1.08345 1.47486 1.32087 0.83271 0.74217 0.75856 0.75789 1.22305 1.22335 1.21091 0.93084 0.92996 0.93053 0.90214 0.92297 0.91346 0.88919 0.84627 0.84296 0.84316 0.89969 0.90981 0.90552 0.91278 0.90118 0.90432 0.92351 0.79972 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.74 5.31 -26.73 -0.14 -1.88 16 3 C -0.11 -1.68 1.92 -90.50 -0.17 -1.85 16 4 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 5 C 0.12 1.66 5.34 -3.71 -0.02 1.64 16 6 N -0.60 -8.14 2.97 -173.88 -0.52 -8.65 16 7 C 0.56 8.05 6.09 -12.33 -0.08 7.97 16 8 O -0.53 -9.09 15.35 5.32 0.08 -9.01 16 9 C -0.10 -1.17 4.60 -104.97 -0.48 -1.65 16 10 C -0.09 -0.90 7.79 -39.18 -0.31 -1.20 16 11 C -0.10 -0.79 10.03 -39.65 -0.40 -1.19 16 12 C -0.13 -1.16 10.02 -39.43 -0.39 -1.55 16 13 C 0.09 1.02 7.23 -39.48 -0.29 0.73 16 14 F -0.13 -1.55 16.56 2.25 0.04 -1.51 16 15 C -0.07 -0.87 5.92 -104.15 -0.62 -1.49 16 16 C -0.12 -1.41 9.03 36.01 0.32 -1.09 16 17 C 0.10 1.32 5.58 -3.72 -0.02 1.30 16 18 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 19 C 0.19 3.48 2.19 -67.89 -0.15 3.33 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.73 -17.13 4.33 -53.39 -0.23 -17.36 16 22 C -0.33 -8.81 9.93 -15.06 -0.15 -8.96 16 23 H 0.06 1.67 7.83 -52.49 -0.41 1.25 16 24 C -0.04 -1.21 5.50 -17.43 -0.10 -1.31 16 25 N -0.94 -28.43 13.70 55.49 0.76 -27.67 16 26 Si 1.08 25.23 29.92 -169.99 -5.09 20.15 16 27 H -0.30 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.30 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 30 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.50 7.22 -51.93 -0.37 1.12 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.34 5.72 -51.93 -0.30 1.05 16 37 H 0.14 1.08 7.77 -52.49 -0.41 0.67 16 38 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 42 H 0.08 1.04 6.56 -51.93 -0.34 0.70 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.93 5.40 -51.93 -0.28 0.65 16 45 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.37 9.08 6.35 -40.82 -0.26 8.82 16 48 H 0.25 7.58 6.77 -40.82 -0.28 7.31 16 LS Contribution 381.52 15.07 5.75 5.75 Total: -1.00 -31.36 381.52 -9.24 -40.61 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -7.27 Total: 9.22 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -2.77 Total: -11.52 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.01 Total: -53.69 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.09 Total: 20.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.36 -9.24 -40.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037855421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.630 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds