Wall clock time and date at job start Tue Mar 31 2020 18:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 5 5 C 1.53002 * 109.47278 * 295.00291 * 4 2 1 6 6 H 1.09002 * 109.47140 * 54.99559 * 5 4 2 7 7 C 1.53002 * 109.47017 * 174.99912 * 5 4 2 8 8 N 1.46506 * 109.46780 * 174.99869 * 7 5 4 9 9 C 1.36933 * 119.99934 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00261 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00060 * 179.97438 * 9 8 7 12 12 N 1.31622 * 120.00177 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 120.00075 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.46719 * 90.00265 * 13 11 9 15 15 H 1.48502 * 109.46928 * 210.00291 * 13 11 9 16 16 H 1.48500 * 109.47041 * 330.00235 * 13 11 9 17 17 N 1.46501 * 109.46769 * 294.99842 * 5 4 2 18 18 C 1.34772 * 120.00038 * 85.00202 * 17 5 4 19 19 O 1.21277 * 120.00350 * 359.97438 * 18 17 5 20 20 C 1.50702 * 119.99814 * 179.97438 * 18 17 5 21 21 H 1.09007 * 112.50796 * 50.33313 * 20 18 17 22 22 C 1.52887 * 113.16611 * 180.15569 * 20 18 17 23 23 C 1.51613 * 84.67807 * 115.22582 * 22 20 18 24 24 C 1.38967 * 145.50049 * 179.97438 * 23 22 20 25 25 C 1.37937 * 120.35225 * 180.10415 * 24 23 22 26 26 C 1.38467 * 120.15187 * 359.97438 * 25 24 23 27 27 F 1.35107 * 120.15013 * 179.97438 * 26 25 24 28 28 C 1.38397 * 119.69537 * 359.97438 * 26 25 24 29 29 C 1.38200 * 120.10707 * 0.02562 * 28 26 25 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 37 37 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 38 38 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 39 39 H 1.09004 * 109.46849 * 294.99138 * 7 5 4 40 40 H 1.08997 * 109.47296 * 55.00175 * 7 5 4 41 41 H 0.97008 * 119.99846 * 0.02562 * 8 7 5 42 42 H 0.96999 * 119.99876 * 179.97438 * 12 11 9 43 43 H 0.96999 * 119.99537 * 264.99589 * 17 5 4 44 44 H 1.08995 * 113.98972 * 229.16810 * 22 20 18 45 45 H 1.08999 * 113.98465 * 1.28313 * 22 20 18 46 46 H 1.07995 * 119.82287 * 0.06740 * 24 23 22 47 47 H 1.07999 * 119.92355 * 179.97438 * 25 24 23 48 48 H 1.08004 * 119.94456 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6353 -2.1955 -1.1878 6 1 0.5563 -2.2707 -1.0526 7 6 2.0355 -2.8889 -2.4917 8 7 1.7571 -4.3234 -2.3873 9 6 2.0351 -5.1533 -3.4404 10 1 2.4601 -4.7504 -4.3479 11 6 1.7718 -6.5125 -3.3413 12 7 1.2544 -7.0038 -2.2352 13 14 2.1505 -7.6445 -4.7783 14 1 3.5385 -8.1570 -4.6522 15 1 1.1994 -8.7850 -4.7740 16 1 2.0145 -6.8914 -6.0509 17 7 2.3147 -2.8420 -0.0624 18 6 1.7814 -2.7778 1.1737 19 8 0.7393 -2.1844 1.3544 20 6 2.4801 -3.4433 2.3312 21 1 3.5346 -3.1742 2.3927 22 6 1.7385 -3.2765 3.6578 23 6 1.5710 -4.7819 3.5914 24 6 1.0532 -5.9056 4.2241 25 6 1.2085 -7.1556 3.6620 26 6 1.8822 -7.2993 2.4608 27 9 2.0346 -8.5237 1.9105 28 6 2.3986 -6.1828 1.8266 29 6 2.2425 -4.9308 2.3906 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6055 -0.2618 -2.1369 38 1 3.1264 -0.6443 -1.2951 39 1 1.4633 -2.4669 -3.3180 40 1 3.0998 -2.7375 -2.6719 41 1 1.3750 -4.6853 -1.5723 42 1 1.0700 -7.9536 -2.1662 43 1 3.1484 -3.3163 -0.2069 44 1 2.3698 -2.9363 4.4786 45 1 0.8036 -2.7222 3.5760 46 1 0.5270 -5.7997 5.1612 47 1 0.8036 -8.0243 4.1599 48 1 2.9244 -6.2902 0.8893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319633021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:57 Heat of formation + Delta-G solvation = -17.394454 kcal Electronic energy + Delta-G solvation = -29820.009974 eV Core-core repulsion = 25790.600660 eV Total energy + Delta-G solvation = -4029.409314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.56867 -41.00913 -39.22828 -36.75086 -34.96757 -34.78691 -33.42892 -31.23599 -30.66343 -29.23797 -27.34237 -26.88953 -25.59063 -25.09147 -22.96785 -22.40563 -21.18999 -20.47642 -19.75056 -19.59071 -17.57544 -17.17273 -16.84587 -16.40985 -15.88879 -15.42657 -15.26478 -14.98287 -14.73552 -14.50548 -14.04275 -13.85960 -13.71813 -13.43129 -13.30718 -13.02346 -12.95317 -12.66293 -12.53668 -12.13135 -12.04326 -11.91006 -11.69813 -11.62862 -11.51041 -11.31053 -11.03891 -10.97505 -10.81828 -10.55065 -10.48870 -10.24488 -10.22352 -9.99425 -9.71879 -9.60975 -8.92214 -8.78235 -8.60661 -8.30397 -6.95943 -5.77224 -3.07417 1.20397 1.34992 2.81491 3.41596 3.43885 3.48003 3.49927 3.70678 4.00516 4.31129 4.46065 4.56039 4.65719 4.91321 5.02811 5.12529 5.13728 5.17228 5.21007 5.36637 5.53033 5.58883 5.62687 5.64622 5.70992 5.72018 5.83466 5.86568 5.95574 5.98175 6.03374 6.08688 6.09760 6.11770 6.21019 6.28099 6.28980 6.31614 6.44296 6.48326 6.65617 6.65864 6.70615 6.83746 6.96111 7.01993 7.68223 7.86017 8.39759 8.52702 9.52012 10.07251 10.42945 11.44284 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.006825 B = 0.005880 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4101.441041 B = 4760.403562 C = 8460.121960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.122 4.122 5 C 0.136 3.864 6 H 0.090 0.910 7 C 0.144 3.856 8 N -0.730 5.730 9 C -0.245 4.245 10 H 0.069 0.931 11 C -0.009 4.009 12 N -0.926 5.926 13 Si 0.904 3.096 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.283 1.283 17 N -0.704 5.704 18 C 0.528 3.472 19 O -0.530 6.530 20 C -0.063 4.063 21 H 0.116 0.884 22 C -0.054 4.054 23 C -0.134 4.134 24 C -0.078 4.078 25 C -0.150 4.150 26 C 0.108 3.892 27 F -0.133 7.133 28 C -0.098 4.098 29 C -0.097 4.097 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.032 0.968 40 H 0.023 0.977 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.403 0.597 44 H 0.097 0.903 45 H 0.113 0.887 46 H 0.125 0.875 47 H 0.135 0.865 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 10.143 13.457 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.161 4.161 5 C 0.031 3.969 6 H 0.108 0.892 7 C 0.016 3.984 8 N -0.375 5.375 9 C -0.376 4.376 10 H 0.087 0.913 11 C -0.205 4.205 12 N -0.574 5.574 13 Si 0.735 3.265 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.354 5.354 18 C 0.313 3.687 19 O -0.408 6.408 20 C -0.084 4.084 21 H 0.133 0.867 22 C -0.091 4.091 23 C -0.134 4.134 24 C -0.096 4.096 25 C -0.169 4.169 26 C 0.088 3.912 27 F -0.111 7.111 28 C -0.117 4.117 29 C -0.097 4.097 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.041 0.959 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.238 0.762 44 H 0.115 0.885 45 H 0.131 0.869 46 H 0.143 0.857 47 H 0.153 0.847 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.736 10.442 13.368 17.182 hybrid contribution 0.549 -1.510 -0.929 1.856 sum 3.285 8.932 12.439 15.662 Atomic orbital electron populations 1.21831 0.94962 1.03090 0.99631 1.21136 0.96566 0.94766 0.98578 1.21872 1.00303 0.97046 1.01141 1.22017 1.00817 0.94852 0.98389 1.21386 0.98437 0.91024 0.86032 0.89178 1.20964 0.97778 0.86572 0.93127 1.42332 1.76623 1.00843 1.17711 1.19174 1.35230 0.88905 0.94288 0.91286 1.24726 1.01612 0.96879 0.97319 1.69652 1.49072 1.12779 1.25866 0.86241 0.77518 0.80748 0.81947 1.21756 1.21802 1.20839 1.45936 1.27255 1.55058 1.07149 1.19923 0.85343 0.79645 0.83785 1.90670 1.22768 1.43117 1.84241 1.21336 1.01784 0.90190 0.95115 0.86651 1.21717 1.01811 0.90747 0.94805 1.22367 0.98748 0.95780 0.96506 1.20234 0.99348 0.90158 0.99866 1.20937 1.01841 0.98495 0.95628 1.17317 1.00312 0.80302 0.93238 1.91535 1.93826 1.40450 1.85307 1.20235 1.01098 0.89536 1.00828 1.20869 0.99415 0.93008 0.96447 0.90538 0.94352 0.93850 0.90675 0.93249 0.93347 0.93154 0.91203 0.91991 0.95039 0.95917 0.77990 0.93457 0.76203 0.88505 0.86896 0.85665 0.84714 0.83935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.04 37.16 0.30 -1.61 16 2 C -0.09 -1.18 2.38 -90.62 -0.22 -1.40 16 3 C -0.15 -1.59 9.19 37.16 0.34 -1.25 16 4 C -0.12 -1.60 4.36 -26.73 -0.12 -1.72 16 5 C 0.14 2.16 2.33 -67.93 -0.16 2.00 16 6 H 0.09 1.65 5.92 -51.93 -0.31 1.34 16 7 C 0.14 2.72 5.82 -4.04 -0.02 2.70 16 8 N -0.73 -17.66 5.43 -59.90 -0.33 -17.98 16 9 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 10 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 11 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 12 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 13 Si 0.90 22.25 29.55 -169.99 -5.02 17.23 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 N -0.70 -10.53 4.47 -53.80 -0.24 -10.77 16 18 C 0.53 7.80 5.88 -10.99 -0.06 7.74 16 19 O -0.53 -8.83 10.62 5.56 0.06 -8.77 16 20 C -0.06 -0.78 4.14 -96.56 -0.40 -1.18 16 21 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 22 C -0.05 -0.59 7.92 -27.49 -0.22 -0.81 16 23 C -0.13 -1.76 7.32 -107.46 -0.79 -2.55 16 24 C -0.08 -0.97 10.04 -39.42 -0.40 -1.36 16 25 C -0.15 -2.04 10.01 -39.61 -0.40 -2.43 16 26 C 0.11 1.77 7.31 -39.44 -0.29 1.48 16 27 F -0.13 -2.40 17.27 2.25 0.04 -2.36 16 28 C -0.10 -1.65 10.02 -39.54 -0.40 -2.05 16 29 C -0.10 -1.42 7.05 -104.56 -0.74 -2.16 16 30 H 0.08 1.24 4.76 -51.93 -0.25 0.99 16 31 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.05 5.19 -51.93 -0.27 0.78 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.39 10.00 7.33 -40.82 -0.30 9.70 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.40 5.86 8.60 -40.82 -0.35 5.51 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.11 1.35 7.02 -51.93 -0.36 0.99 16 46 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 47 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 48 H 0.14 2.61 8.06 -52.48 -0.42 2.19 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -30.79 387.74 -10.03 -40.82 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -7.30 Total: 14.39 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -3.80 Total: -11.71 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.16 Total: -55.43 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.06 Total: -8.77 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.79 -10.03 -40.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319633021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.422 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds