Wall clock time and date at job start Tue Mar 31 2020 18:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 5 5 C 1.53002 * 109.47278 * 295.00291 * 4 2 1 6 6 H 1.09002 * 109.47140 * 54.99559 * 5 4 2 7 7 C 1.53002 * 109.47017 * 174.99912 * 5 4 2 8 8 N 1.46506 * 109.46780 * 174.99869 * 7 5 4 9 9 C 1.36933 * 119.99934 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00261 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00060 * 179.97438 * 9 8 7 12 12 N 1.31622 * 120.00177 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 120.00075 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.46719 * 90.00265 * 13 11 9 15 15 H 1.48502 * 109.46928 * 210.00291 * 13 11 9 16 16 H 1.48500 * 109.47041 * 330.00235 * 13 11 9 17 17 N 1.46501 * 109.46769 * 294.99842 * 5 4 2 18 18 C 1.34772 * 120.00038 * 85.00202 * 17 5 4 19 19 O 1.21277 * 120.00350 * 359.97438 * 18 17 5 20 20 C 1.50702 * 119.99814 * 179.97438 * 18 17 5 21 21 H 1.09007 * 112.50796 * 50.33313 * 20 18 17 22 22 C 1.52887 * 113.16611 * 180.15569 * 20 18 17 23 23 C 1.51613 * 84.67807 * 115.22582 * 22 20 18 24 24 C 1.38967 * 145.50049 * 179.97438 * 23 22 20 25 25 C 1.37937 * 120.35225 * 180.10415 * 24 23 22 26 26 C 1.38467 * 120.15187 * 359.97438 * 25 24 23 27 27 F 1.35107 * 120.15013 * 179.97438 * 26 25 24 28 28 C 1.38397 * 119.69537 * 359.97438 * 26 25 24 29 29 C 1.38200 * 120.10707 * 0.02562 * 28 26 25 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 37 37 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 38 38 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 39 39 H 1.09004 * 109.46849 * 294.99138 * 7 5 4 40 40 H 1.08997 * 109.47296 * 55.00175 * 7 5 4 41 41 H 0.97008 * 119.99846 * 0.02562 * 8 7 5 42 42 H 0.96999 * 119.99876 * 179.97438 * 12 11 9 43 43 H 0.96999 * 119.99537 * 264.99589 * 17 5 4 44 44 H 1.08995 * 113.98972 * 229.16810 * 22 20 18 45 45 H 1.08999 * 113.98465 * 1.28313 * 22 20 18 46 46 H 1.07995 * 119.82287 * 0.06740 * 24 23 22 47 47 H 1.07999 * 119.92355 * 179.97438 * 25 24 23 48 48 H 1.08004 * 119.94456 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6353 -2.1955 -1.1878 6 1 0.5563 -2.2707 -1.0526 7 6 2.0355 -2.8889 -2.4917 8 7 1.7571 -4.3234 -2.3873 9 6 2.0351 -5.1533 -3.4404 10 1 2.4601 -4.7504 -4.3479 11 6 1.7718 -6.5125 -3.3413 12 7 1.2544 -7.0038 -2.2352 13 14 2.1505 -7.6445 -4.7783 14 1 3.5385 -8.1570 -4.6522 15 1 1.1994 -8.7850 -4.7740 16 1 2.0145 -6.8914 -6.0509 17 7 2.3147 -2.8420 -0.0624 18 6 1.7814 -2.7778 1.1737 19 8 0.7393 -2.1844 1.3544 20 6 2.4801 -3.4433 2.3312 21 1 3.5346 -3.1742 2.3927 22 6 1.7385 -3.2765 3.6578 23 6 1.5710 -4.7819 3.5914 24 6 1.0532 -5.9056 4.2241 25 6 1.2085 -7.1556 3.6620 26 6 1.8822 -7.2993 2.4608 27 9 2.0346 -8.5237 1.9105 28 6 2.3986 -6.1828 1.8266 29 6 2.2425 -4.9308 2.3906 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6055 -0.2618 -2.1369 38 1 3.1264 -0.6443 -1.2951 39 1 1.4633 -2.4669 -3.3180 40 1 3.0998 -2.7375 -2.6719 41 1 1.3750 -4.6853 -1.5723 42 1 1.0700 -7.9536 -2.1662 43 1 3.1484 -3.3163 -0.2069 44 1 2.3698 -2.9363 4.4786 45 1 0.8036 -2.7222 3.5760 46 1 0.5270 -5.7997 5.1612 47 1 0.8036 -8.0243 4.1599 48 1 2.9244 -6.2902 0.8893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319633021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:56 Heat of formation + Delta-G solvation = -34.575114 kcal Electronic energy + Delta-G solvation = -29820.754983 eV Core-core repulsion = 25790.600660 eV Total energy + Delta-G solvation = -4030.154323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.89585 -42.10484 -40.40677 -38.00475 -36.44565 -35.86809 -34.98484 -33.00012 -31.82401 -30.69729 -28.43051 -27.89055 -27.16666 -26.18494 -24.63855 -23.66099 -22.42885 -21.75135 -20.90026 -20.66132 -19.24826 -18.60364 -18.06224 -17.59229 -17.15204 -16.83099 -16.59782 -16.30421 -16.12802 -15.74391 -15.48028 -15.25073 -14.90745 -14.70687 -14.56713 -14.47708 -14.33629 -13.92019 -13.62073 -13.54223 -13.14516 -13.00684 -12.94372 -12.83115 -12.72412 -12.64994 -12.50628 -12.36153 -12.29337 -12.11703 -11.88739 -11.60578 -11.55659 -11.34197 -11.18908 -10.98124 -10.76962 -9.92005 -9.84577 -9.43304 -9.00060 -7.93418 -5.22812 0.08505 0.21671 1.45290 1.46058 1.54594 1.65019 2.27475 2.54318 2.58339 2.91790 3.29606 3.40312 3.47378 3.58024 3.66826 3.91798 4.01776 4.05017 4.12795 4.27602 4.27995 4.37137 4.41964 4.44693 4.55657 4.69406 4.70038 4.84931 4.86155 4.91194 4.93245 4.96168 5.00106 5.03187 5.12379 5.14536 5.17486 5.21283 5.22312 5.28081 5.43303 5.50726 5.60438 5.62573 5.66760 5.71972 5.89791 6.25089 6.65546 7.33666 7.34121 8.08170 8.31702 9.27830 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.006825 B = 0.005880 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4101.441041 B = 4760.403562 C = 8460.121960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.113 4.113 5 C 0.147 3.853 6 H 0.063 0.937 7 C 0.143 3.857 8 N -0.741 5.741 9 C -0.243 4.243 10 H 0.076 0.924 11 C -0.069 4.069 12 N -0.959 5.959 13 Si 0.966 3.034 14 H -0.287 1.287 15 H -0.301 1.301 16 H -0.269 1.269 17 N -0.705 5.705 18 C 0.524 3.476 19 O -0.550 6.550 20 C -0.059 4.059 21 H 0.147 0.853 22 C -0.037 4.037 23 C -0.131 4.131 24 C -0.073 4.073 25 C -0.145 4.145 26 C 0.073 3.927 27 F -0.152 7.152 28 C -0.123 4.123 29 C -0.117 4.117 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.032 0.968 40 H 0.037 0.963 41 H 0.374 0.626 42 H 0.247 0.753 43 H 0.405 0.595 44 H 0.138 0.862 45 H 0.106 0.894 46 H 0.164 0.836 47 H 0.160 0.840 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 12.391 14.748 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 C -0.198 4.198 4 C -0.152 4.152 5 C 0.042 3.958 6 H 0.081 0.919 7 C 0.016 3.984 8 N -0.384 5.384 9 C -0.375 4.375 10 H 0.094 0.906 11 C -0.262 4.262 12 N -0.610 5.610 13 Si 0.796 3.204 14 H -0.215 1.215 15 H -0.228 1.228 16 H -0.194 1.194 17 N -0.355 5.355 18 C 0.310 3.690 19 O -0.428 6.428 20 C -0.080 4.080 21 H 0.165 0.835 22 C -0.074 4.074 23 C -0.131 4.131 24 C -0.090 4.090 25 C -0.163 4.163 26 C 0.054 3.946 27 F -0.131 7.131 28 C -0.142 4.142 29 C -0.117 4.117 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.206 0.794 42 H 0.055 0.945 43 H 0.240 0.760 44 H 0.156 0.844 45 H 0.124 0.876 46 H 0.182 0.818 47 H 0.178 0.822 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.460 12.738 14.636 19.709 hybrid contribution 0.298 -2.132 -1.330 2.530 sum 3.758 10.606 13.307 17.426 Atomic orbital electron populations 1.21764 0.95914 1.01310 1.00089 1.21074 0.95670 0.96132 0.97771 1.21809 1.00949 0.95281 1.01756 1.21953 1.01729 0.92426 0.99056 1.21156 0.96953 0.92716 0.84931 0.91880 1.21128 0.98365 0.83916 0.94955 1.42495 1.76455 1.02851 1.16574 1.19565 1.33593 0.89406 0.94964 0.90561 1.25477 1.02584 0.98500 0.99646 1.69828 1.51045 1.12272 1.27806 0.85250 0.76903 0.78580 0.79670 1.21460 1.22822 1.19420 1.45936 1.27218 1.55104 1.07197 1.20361 0.85145 0.79306 0.84156 1.90670 1.23548 1.44056 1.84565 1.21499 1.03647 0.88116 0.94732 0.83504 1.21797 1.01937 0.88681 0.94946 1.22835 0.97388 0.97398 0.95483 1.20674 0.98347 0.89172 1.00852 1.21256 1.00574 1.00228 0.94259 1.17719 1.02392 0.79575 0.94929 1.91471 1.94226 1.41541 1.85888 1.20153 1.02545 0.91231 1.00317 1.21138 0.99949 0.93302 0.97344 0.93387 0.93627 0.93607 0.91593 0.92670 0.92272 0.92557 0.90501 0.90517 0.94986 0.94493 0.79400 0.94454 0.76030 0.84416 0.87550 0.81800 0.82236 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 8.04 71.98 0.58 -3.00 16 2 C -0.09 -2.10 2.38 -10.79 -0.03 -2.13 16 3 C -0.14 -2.65 9.19 71.98 0.66 -1.98 16 4 C -0.11 -2.78 4.36 30.59 0.13 -2.64 16 5 C 0.15 4.69 2.33 44.99 0.10 4.79 16 6 H 0.06 2.38 5.92 -2.39 -0.01 2.37 16 7 C 0.14 5.40 5.82 86.38 0.50 5.91 16 8 N -0.74 -36.60 5.43 -343.44 -1.87 -38.47 16 9 C -0.24 -13.36 9.99 84.03 0.84 -12.52 16 10 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 11 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 12 N -0.96 -59.13 13.06 21.65 0.28 -58.84 16 13 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 14 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 15 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 N -0.70 -21.09 4.47 -442.53 -1.98 -23.07 16 18 C 0.52 15.25 5.88 87.66 0.52 15.77 16 19 O -0.55 -18.14 10.62 -3.02 -0.03 -18.17 16 20 C -0.06 -1.36 4.14 -14.64 -0.06 -1.43 16 21 H 0.15 2.43 8.14 -2.38 -0.02 2.41 16 22 C -0.04 -0.70 7.92 30.10 0.24 -0.46 16 23 C -0.13 -3.19 7.32 -21.70 -0.16 -3.34 16 24 C -0.07 -1.63 10.04 22.37 0.22 -1.41 16 25 C -0.14 -3.82 10.01 22.25 0.22 -3.60 16 26 C 0.07 2.53 7.31 22.36 0.16 2.70 16 27 F -0.15 -5.95 17.27 44.97 0.78 -5.18 16 28 C -0.12 -4.44 10.02 22.30 0.22 -4.22 16 29 C -0.12 -3.43 7.05 -19.82 -0.14 -3.57 16 30 H 0.05 1.57 4.76 -2.39 -0.01 1.56 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.07 1.72 5.19 -2.39 -0.01 1.71 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.37 20.19 7.33 -92.70 -0.68 19.51 16 42 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 43 H 0.40 11.87 8.60 -92.71 -0.80 11.07 16 44 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.11 2.26 7.02 -2.39 -0.02 2.24 16 46 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 47 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 48 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -69.62 387.74 3.21 -66.40 By element: Atomic # 1 Polarization: 43.82 SS G_CDS: -0.49 Total: 43.33 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 4.49 Total: -14.64 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -3.56 Total: -120.38 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.03 Total: -18.17 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.78 Total: -5.18 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -69.62 3.21 -66.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319633021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.828 kcal (2) G-P(sol) polarization free energy of solvation -69.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds