Wall clock time and date at job start Tue Mar 31 2020 18:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 110.77705 * 2 1 4 4 C 1.54418 * 110.72983 * 236.70122 * 2 1 3 5 5 N 1.47024 * 107.28157 * 263.84919 * 4 2 1 6 6 C 1.36930 * 125.65045 * 181.02727 * 5 4 2 7 7 H 1.08007 * 120.00201 * 0.02562 * 6 5 4 8 8 C 1.38813 * 120.00418 * 180.02562 * 6 5 4 9 9 N 1.31618 * 119.99605 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00299 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46917 * 90.00448 * 10 8 6 12 12 H 1.48504 * 109.47110 * 209.99996 * 10 8 6 13 13 H 1.48501 * 109.47349 * 330.00398 * 10 8 6 14 14 C 1.47429 * 108.69976 * 1.05667 * 5 4 2 15 15 C 1.54901 * 104.83539 * 335.87637 * 14 5 4 16 16 H 1.08992 * 111.00708 * 155.12608 * 15 14 5 17 17 N 1.46505 * 111.00119 * 278.93421 * 15 14 5 18 18 C 1.34777 * 120.00115 * 270.41745 * 17 15 14 19 19 O 1.21282 * 119.99620 * 359.97438 * 18 17 15 20 20 C 1.50697 * 120.00369 * 180.02562 * 18 17 15 21 21 C 1.52997 * 109.47466 * 180.02562 * 20 18 17 22 22 C 1.50701 * 109.47212 * 179.97438 * 21 20 18 23 23 C 1.38224 * 120.01147 * 99.99850 * 22 21 20 24 24 C 1.38218 * 120.02596 * 179.97438 * 23 22 21 25 25 C 1.38270 * 120.05109 * 0.02732 * 24 23 22 26 26 C 1.38170 * 120.02397 * 359.97438 * 25 24 23 27 27 C 1.38432 * 120.01370 * 279.72550 * 22 21 20 28 28 F 1.35102 * 120.02704 * 359.97438 * 27 22 21 29 29 H 1.08998 * 109.47800 * 296.76867 * 1 2 3 30 30 H 1.09005 * 109.47091 * 56.76953 * 1 2 3 31 31 H 1.09007 * 109.46664 * 176.76030 * 1 2 3 32 32 H 1.09000 * 109.47009 * 183.24063 * 3 2 1 33 33 H 1.09002 * 109.46928 * 303.23162 * 3 2 1 34 34 H 1.09000 * 109.47367 * 63.23174 * 3 2 1 35 35 H 1.09000 * 109.87628 * 144.42720 * 4 2 1 36 36 H 1.09003 * 110.01053 * 23.33939 * 4 2 1 37 37 H 0.97002 * 120.00251 * 179.97438 * 9 8 6 38 38 H 1.09003 * 110.36478 * 217.03473 * 14 5 4 39 39 H 1.09001 * 110.45636 * 94.76561 * 14 5 4 40 40 H 0.97003 * 120.00244 * 90.41775 * 17 15 14 41 41 H 1.09002 * 109.47120 * 59.99760 * 20 18 17 42 42 H 1.08998 * 109.46862 * 300.00562 * 20 18 17 43 43 H 1.09002 * 109.47153 * 59.99773 * 21 20 18 44 44 H 1.09001 * 109.46832 * 299.99964 * 21 20 18 45 45 H 1.08002 * 119.98697 * 359.97438 * 23 22 21 46 46 H 1.07999 * 119.97411 * 180.02562 * 24 23 22 47 47 H 1.07995 * 119.98601 * 179.97438 * 25 24 23 48 48 H 1.08004 * 120.01264 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0766 -0.7929 -1.2071 5 7 2.3719 -2.1545 -0.7377 6 6 2.8936 -3.1657 -1.4995 7 1 3.1242 -2.9938 -2.5406 8 6 3.1262 -4.4119 -0.9339 9 7 2.8447 -4.6216 0.3347 10 14 3.8372 -5.7915 -1.9733 11 1 5.3197 -5.7556 -1.8962 12 1 3.3466 -7.0976 -1.4648 13 1 3.4106 -5.6180 -3.3851 14 6 2.0125 -2.2511 0.6888 15 6 2.0788 -0.7953 1.2139 16 1 1.4399 -0.6655 2.0873 17 7 3.4594 -0.4080 1.5147 18 6 3.9680 -0.6259 2.7436 19 8 3.2826 -1.1422 3.6007 20 6 5.3878 -0.2270 3.0531 21 6 5.7124 -0.5823 4.5055 22 6 7.1325 -0.1840 4.8148 23 6 7.3882 0.9921 5.4946 24 6 8.6906 1.3575 5.7789 25 6 9.7391 0.5475 5.3832 26 6 9.4859 -0.6285 4.7036 27 6 8.1811 -0.9985 4.4232 28 9 7.9321 -2.1512 3.7640 29 1 -0.3634 0.4628 0.9175 30 1 -0.3633 0.5632 -0.8597 31 1 -0.3633 -1.0261 -0.0581 32 1 3.1609 1.4063 -0.0581 33 1 1.6751 1.9700 -0.8596 34 1 1.7689 1.9345 0.9175 35 1 2.9876 -0.3227 -1.5775 36 1 1.3291 -0.8280 -1.9997 37 1 3.0068 -5.4924 0.7299 38 1 2.7291 -2.8786 1.2189 39 1 1.0042 -2.6495 0.8016 40 1 4.0075 0.0053 0.8293 41 1 5.5036 0.8469 2.9069 42 1 6.0680 -0.7595 2.3884 43 1 5.5967 -1.6563 4.6513 44 1 5.0323 -0.0500 5.1704 45 1 6.5701 1.6257 5.8037 46 1 8.8894 2.2763 6.3104 47 1 10.7562 0.8343 5.6056 48 1 10.3050 -1.2608 4.3942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717587607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:34 Heat of formation + Delta-G solvation = -42.218235 kcal Electronic energy + Delta-G solvation = -29275.609384 eV Core-core repulsion = 25245.123630 eV Total energy + Delta-G solvation = -4030.485754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.89171 -39.76353 -39.17989 -37.87603 -34.08073 -33.77075 -32.93955 -30.79085 -30.67405 -29.86141 -28.02731 -26.81537 -25.59232 -24.78578 -23.14930 -22.91768 -21.40267 -20.35819 -19.64167 -18.58658 -17.66954 -16.86335 -16.61398 -16.59929 -15.88291 -15.64611 -15.52036 -15.06127 -14.51426 -14.34867 -13.94710 -13.81943 -13.71740 -13.43172 -13.23067 -13.09002 -12.94297 -12.65522 -12.53683 -12.14065 -11.97295 -11.84113 -11.78422 -11.70619 -11.26551 -11.16703 -11.08291 -10.97436 -10.88601 -10.74322 -10.37886 -10.18085 -9.91683 -9.76913 -9.65824 -9.38561 -9.11797 -8.76876 -8.63862 -8.28183 -6.77689 -5.59512 -3.02715 0.97438 1.00896 3.17288 3.36884 3.42278 3.46888 3.49604 3.73913 4.15644 4.51594 4.52619 4.59782 4.74813 4.98824 5.01310 5.08620 5.12158 5.25309 5.27316 5.30703 5.37883 5.55428 5.63879 5.67982 5.69267 5.79971 5.83189 5.88757 5.89948 6.01696 6.05310 6.12565 6.16951 6.19434 6.21107 6.28671 6.29891 6.44693 6.50978 6.64003 6.72338 6.72890 6.80962 7.04718 7.53678 7.65686 7.92279 8.10568 8.43120 8.79407 9.25507 9.87154 10.51366 11.42960 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.003471 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.552008 B = 8065.302956 C = 9922.650702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.130 4.130 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.226 4.226 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.916 5.916 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.146 3.854 15 C 0.124 3.876 16 H 0.085 0.915 17 N -0.703 5.703 18 C 0.514 3.486 19 O -0.546 6.546 20 C -0.134 4.134 21 C -0.064 4.064 22 C -0.112 4.112 23 C -0.089 4.089 24 C -0.132 4.132 25 C -0.099 4.099 26 C -0.154 4.154 27 C 0.103 3.897 28 F -0.132 7.132 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.020 0.980 36 H 0.023 0.977 37 H 0.252 0.748 38 H 0.113 0.887 39 H 0.019 0.981 40 H 0.395 0.605 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.132 0.868 46 H 0.127 0.873 47 H 0.129 0.871 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.095 15.886 8.731 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.187 4.187 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.354 4.354 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.020 3.980 15 C 0.019 3.981 16 H 0.103 0.897 17 N -0.352 5.352 18 C 0.300 3.700 19 O -0.424 6.424 20 C -0.174 4.174 21 C -0.102 4.102 22 C -0.113 4.113 23 C -0.107 4.107 24 C -0.150 4.150 25 C -0.117 4.117 26 C -0.173 4.173 27 C 0.083 3.917 28 F -0.110 7.110 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.130 0.870 39 H 0.037 0.963 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.150 0.850 46 H 0.145 0.855 47 H 0.147 0.853 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.629 15.225 9.320 19.827 hybrid contribution 0.658 -0.841 -1.159 1.576 sum 9.287 14.384 8.161 18.968 Atomic orbital electron populations 1.21685 0.93627 1.02466 1.00804 1.21853 0.95950 0.94536 0.96527 1.21706 1.00391 0.95459 1.01183 1.21418 0.96388 0.86851 0.93628 1.44452 1.74194 1.06640 1.07378 1.19015 1.34287 0.89255 0.92860 0.90637 1.24786 1.01698 0.97611 0.96330 1.69808 1.53488 1.22316 1.10787 0.86127 0.78746 0.81831 0.79089 1.21664 1.21679 1.20816 1.22299 1.00015 0.90605 0.85055 1.22488 0.81516 0.98041 0.96067 0.89698 1.45802 1.14723 1.62284 1.12439 1.20362 0.88704 0.78542 0.82356 1.90679 1.61340 1.43373 1.46998 1.21597 0.95047 1.02871 0.97909 1.20273 0.90531 1.03659 0.95717 1.20087 0.95504 0.95429 1.00232 1.21006 0.97254 0.95193 0.97268 1.21192 0.92562 1.00238 1.01004 1.20984 0.99579 0.93727 0.97416 1.21179 0.95226 0.98923 1.02003 1.17673 0.93630 0.83809 0.96560 1.91556 1.95032 1.46341 1.78098 0.93108 0.92764 0.91768 0.92928 0.92813 0.92879 0.96173 0.95945 0.93700 0.86975 0.96326 0.77003 0.89274 0.88896 0.89535 0.89690 0.84983 0.85477 0.85268 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.41 37.16 0.31 -1.64 16 2 C -0.09 -1.45 0.81 -152.62 -0.12 -1.58 16 3 C -0.13 -1.70 8.08 37.16 0.30 -1.40 16 4 C 0.14 2.89 6.41 -3.01 -0.02 2.87 16 5 N -0.60 -15.12 3.39 -170.01 -0.58 -15.70 16 6 C -0.23 -6.29 10.27 -15.06 -0.15 -6.44 16 7 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.48 10.09 55.49 0.56 -26.92 16 10 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.15 3.62 5.27 -2.53 -0.01 3.61 16 15 C 0.12 2.41 2.61 -65.78 -0.17 2.24 16 16 H 0.09 1.69 7.53 -51.93 -0.39 1.30 16 17 N -0.70 -12.31 4.62 -51.73 -0.24 -12.55 16 18 C 0.51 9.17 7.83 -10.99 -0.09 9.08 16 19 O -0.55 -11.72 15.67 5.56 0.09 -11.63 16 20 C -0.13 -1.83 5.68 -27.89 -0.16 -1.99 16 21 C -0.06 -0.85 4.36 -27.88 -0.12 -0.98 16 22 C -0.11 -1.30 5.14 -104.55 -0.54 -1.84 16 23 C -0.09 -0.82 9.67 -39.59 -0.38 -1.21 16 24 C -0.13 -1.04 10.04 -39.58 -0.40 -1.44 16 25 C -0.10 -0.80 10.04 -39.59 -0.40 -1.20 16 26 C -0.15 -1.55 10.03 -39.52 -0.40 -1.94 16 27 C 0.10 1.28 7.24 -39.42 -0.29 1.00 16 28 F -0.13 -1.98 16.66 2.25 0.04 -1.95 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.12 7.58 -51.92 -0.39 0.72 16 32 H 0.05 0.66 6.42 -51.93 -0.33 0.32 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.02 0.40 7.77 -51.93 -0.40 0.00 16 36 H 0.02 0.46 7.85 -51.93 -0.41 0.05 16 37 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.11 3.26 5.88 -51.93 -0.31 2.95 16 39 H 0.02 0.50 7.81 -51.93 -0.41 0.10 16 40 H 0.40 6.20 7.03 -40.82 -0.29 5.91 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.09 1.36 7.89 -51.93 -0.41 0.95 16 44 H 0.08 1.07 7.96 -51.93 -0.41 0.65 16 45 H 0.13 0.97 8.04 -52.49 -0.42 0.55 16 46 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 47 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 48 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 389.61 15.07 5.87 5.87 Total: -1.00 -33.10 389.61 -9.54 -42.63 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.52 Total: 5.97 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.73 Total: -3.19 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.26 Total: -55.16 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.10 -9.54 -42.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717587607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.415 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds