Wall clock time and date at job start Tue Mar 31 2020 18:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 120.00142 * 2 1 4 4 C 1.50696 * 109.47193 * 89.99333 * 3 2 1 5 5 C 1.38224 * 120.01098 * 105.00143 * 4 3 2 6 6 C 1.38214 * 120.02655 * 179.97438 * 5 4 3 7 7 C 1.38270 * 120.05424 * 0.02852 * 6 5 4 8 8 C 1.38180 * 120.02318 * 359.97438 * 7 6 5 9 9 C 1.38435 * 120.01674 * 284.72709 * 4 3 2 10 10 F 1.35103 * 120.02726 * 0.02562 * 9 4 3 11 11 C 1.34779 * 120.00147 * 180.27169 * 2 1 3 12 12 O 1.21275 * 119.99944 * 179.72868 * 11 2 1 13 13 C 1.50701 * 119.99745 * 359.72851 * 11 2 1 14 14 N 1.46901 * 109.46878 * 175.44031 * 13 11 2 15 15 C 1.46904 * 111.00283 * 76.29808 * 14 13 11 16 16 C 1.50702 * 109.47193 * 189.99933 * 15 14 13 17 17 H 1.07999 * 119.99780 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99768 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99701 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00079 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47314 * 89.99904 * 20 18 16 22 22 H 1.48504 * 109.46642 * 210.00084 * 20 18 16 23 23 H 1.48503 * 109.47168 * 329.99756 * 20 18 16 24 24 C 1.46903 * 110.99858 * 200.25480 * 14 13 11 25 25 C 1.52997 * 109.47154 * 75.38725 * 24 14 13 26 26 C 1.53001 * 117.49753 * 244.32944 * 25 24 14 27 27 C 1.52998 * 117.49978 * 175.70707 * 25 24 14 28 28 H 1.09006 * 109.46978 * 90.00421 * 1 2 3 29 29 H 1.09002 * 109.46938 * 209.99947 * 1 2 3 30 30 H 1.08992 * 109.47255 * 330.00310 * 1 2 3 31 31 H 1.08999 * 109.47353 * 210.00102 * 3 2 1 32 32 H 1.09011 * 109.46514 * 329.99883 * 3 2 1 33 33 H 1.08004 * 119.98392 * 0.02562 * 5 4 3 34 34 H 1.08004 * 119.97601 * 179.97438 * 6 5 4 35 35 H 1.08002 * 119.98827 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.01444 * 179.97438 * 8 7 6 37 37 H 1.09000 * 109.47124 * 295.43910 * 13 11 2 38 38 H 1.09000 * 109.47355 * 55.43755 * 13 11 2 39 39 H 1.08993 * 109.46942 * 310.00195 * 15 14 13 40 40 H 1.09003 * 109.46803 * 69.99706 * 15 14 13 41 41 H 0.97001 * 119.99877 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.46999 * 195.38830 * 24 14 13 43 43 H 1.08996 * 109.46916 * 315.38687 * 24 14 13 44 44 H 1.09000 * 115.55095 * 30.03175 * 25 24 14 45 45 H 1.08997 * 117.50033 * 359.97438 * 26 25 24 46 46 H 1.08992 * 117.49995 * 145.02395 * 26 25 24 47 47 H 1.08996 * 117.50029 * 214.97831 * 27 25 24 48 48 H 1.09006 * 117.49666 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4486 1.7038 1.4208 5 6 3.7110 1.5783 1.9694 6 6 3.9418 1.9778 3.2723 7 6 2.9102 2.5028 4.0286 8 6 1.6473 2.6292 3.4823 9 6 1.4163 2.2347 2.1751 10 9 0.1831 2.3625 1.6383 11 6 2.1389 -1.1672 -0.0055 12 8 3.3517 -1.1671 -0.0105 13 6 1.3854 -2.4723 -0.0055 14 7 2.3358 -3.5864 -0.1222 15 6 3.0202 -3.8305 1.1546 16 6 4.1513 -4.8030 0.9403 17 1 4.3429 -5.1997 -0.0458 18 6 4.9415 -5.1863 2.0031 19 7 5.9289 -6.0346 1.8161 20 14 4.6096 -4.5006 3.7088 21 1 3.6539 -5.3863 4.4210 22 1 5.8825 -4.4314 4.4706 23 1 4.0288 -3.1390 3.5906 24 6 1.6651 -4.8025 -0.6010 25 6 1.3876 -4.6753 -2.1002 26 6 -0.0752 -4.6463 -2.5479 27 6 0.7813 -5.8864 -2.8117 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5137 31 1 3.1500 1.1384 -0.5138 32 1 1.6084 2.0284 -0.5139 33 1 4.5177 1.1687 1.3795 34 1 4.9284 1.8790 3.7004 35 1 3.0916 2.8142 5.0468 36 1 0.8415 3.0389 4.0733 37 1 0.8253 -2.5684 0.9246 38 1 0.6954 -2.4935 -0.8490 39 1 3.4167 -2.8911 1.5396 40 1 2.3132 -4.2476 1.8718 41 1 6.4846 -6.3045 2.5639 42 1 2.3065 -5.6655 -0.4221 43 1 0.7239 -4.9325 -0.0670 44 1 2.0976 -4.0662 -2.6597 45 1 -0.8397 -4.7184 -1.7744 46 1 -0.3277 -4.0182 -3.4021 47 1 1.0921 -6.0741 -3.8394 48 1 0.5804 -6.7741 -2.2117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081061777.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:23 Heat of formation + Delta-G solvation = -7.363466 kcal Electronic energy + Delta-G solvation = -29553.662020 eV Core-core repulsion = 25524.687683 eV Total energy + Delta-G solvation = -4028.974337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.15093 -39.88356 -38.86229 -37.62246 -35.67211 -35.00480 -32.45722 -32.07337 -30.62001 -28.76412 -27.78421 -27.12455 -25.70224 -23.85384 -22.87885 -22.16942 -21.81734 -20.75471 -19.86207 -18.83982 -17.79233 -16.95220 -16.85688 -16.37499 -16.23143 -16.18954 -15.43484 -15.27910 -15.21222 -14.57127 -14.22422 -13.95680 -13.91816 -13.59725 -13.44404 -13.35324 -13.00656 -12.73227 -12.56434 -12.31228 -12.19325 -12.14800 -11.93641 -11.81879 -11.57969 -11.38855 -11.28366 -11.14376 -10.94312 -10.64331 -10.37857 -9.87518 -9.78256 -9.53719 -9.46951 -9.16700 -8.98244 -8.80702 -8.53394 -8.47081 -7.38518 -5.96540 -3.91616 0.97942 1.09529 3.05327 3.09711 3.32261 3.39960 3.45316 3.58347 4.07885 4.10770 4.49808 4.54101 4.57178 4.63841 4.80246 4.95618 5.10786 5.14626 5.15334 5.20872 5.24461 5.36125 5.36397 5.40212 5.43316 5.57863 5.64597 5.68299 5.72636 5.75936 5.79821 5.88273 5.96092 5.99608 6.09468 6.22062 6.24137 6.31716 6.33529 6.44796 6.57766 6.76537 6.77436 6.90846 7.05317 7.49432 7.73446 7.93075 8.07247 8.61941 8.74834 9.12832 9.65929 11.16865 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008944 B = 0.004565 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.813116 B = 6132.164969 C = 8579.723829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.624 5.624 3 C 0.159 3.841 4 C -0.136 4.136 5 C -0.065 4.065 6 C -0.130 4.130 7 C -0.092 4.092 8 C -0.160 4.160 9 C 0.104 3.896 10 F -0.137 7.137 11 C 0.513 3.487 12 O -0.496 6.496 13 C 0.039 3.961 14 N -0.506 5.506 15 C 0.164 3.836 16 C -0.498 4.498 17 H 0.082 0.918 18 C 0.069 3.931 19 N -0.902 5.902 20 Si 0.871 3.129 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.267 1.267 24 C 0.091 3.909 25 C -0.134 4.134 26 C -0.194 4.194 27 C -0.180 4.180 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.040 0.960 40 H -0.023 1.023 41 H 0.262 0.738 42 H 0.100 0.900 43 H 0.022 0.978 44 H 0.110 0.890 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.699 16.777 -1.481 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.361 5.361 3 C 0.036 3.964 4 C -0.138 4.138 5 C -0.084 4.084 6 C -0.148 4.148 7 C -0.110 4.110 8 C -0.179 4.179 9 C 0.085 3.915 10 F -0.116 7.116 11 C 0.300 3.700 12 O -0.367 6.367 13 C -0.093 4.093 14 N -0.230 5.230 15 C 0.038 3.962 16 C -0.537 4.537 17 H 0.100 0.900 18 C -0.132 4.132 19 N -0.542 5.542 20 Si 0.698 3.302 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.192 1.192 24 C -0.037 4.037 25 C -0.152 4.152 26 C -0.231 4.231 27 C -0.217 4.217 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.058 0.942 40 H -0.005 1.005 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.041 0.959 44 H 0.128 0.872 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.108 0.892 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.558 16.778 -1.764 21.032 hybrid contribution -1.108 0.136 1.602 1.953 sum -13.666 16.914 -0.162 21.745 Atomic orbital electron populations 1.22036 0.79827 1.04018 1.01814 1.47963 1.06692 1.05266 1.76148 1.20164 0.99160 0.85605 0.91466 1.20386 0.93449 1.01598 0.98358 1.21169 0.96174 0.95695 0.95332 1.21299 0.99850 0.99243 0.94405 1.21034 0.91992 0.98064 0.99937 1.21082 0.98827 1.04021 0.93926 1.17535 0.79783 1.01642 0.92559 1.91363 1.40430 1.93674 1.86140 1.20909 0.88532 0.84817 0.75748 1.90731 1.13507 1.86505 1.45957 1.21960 0.94865 0.91089 1.01362 1.61577 1.25727 1.03275 1.32436 1.20257 0.93540 0.97774 0.84632 1.20983 1.11934 1.23681 0.97081 0.90027 1.24841 0.94965 0.94905 0.98487 1.69892 1.19105 1.33685 1.31471 0.86926 0.77775 0.80150 0.85324 1.20538 1.21163 1.19217 1.21663 0.96773 0.94466 0.90815 1.22451 0.94712 1.00977 0.97097 1.23040 0.94768 1.02043 1.03249 1.22882 1.04753 0.92765 1.01348 0.92768 0.91294 0.89983 0.88383 0.89782 0.84307 0.85170 0.85154 0.84963 0.93046 0.88893 0.94224 1.00519 0.92824 0.88169 0.95948 0.87206 0.89416 0.89511 0.89187 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 10.14 59.85 0.61 1.30 16 2 N -0.62 -8.70 2.86 -182.95 -0.52 -9.22 16 3 C 0.16 2.00 5.27 -5.19 -0.03 1.98 16 4 C -0.14 -1.76 5.47 -104.56 -0.57 -2.33 16 5 C -0.07 -0.86 9.67 -39.60 -0.38 -1.25 16 6 C -0.13 -1.50 10.04 -39.58 -0.40 -1.90 16 7 C -0.09 -0.94 10.04 -39.59 -0.40 -1.34 16 8 C -0.16 -1.69 10.03 -39.51 -0.40 -2.09 16 9 C 0.10 1.25 7.25 -39.42 -0.29 0.97 16 10 F -0.14 -1.56 13.84 2.25 0.03 -1.53 16 11 C 0.51 9.25 7.42 -10.98 -0.08 9.17 16 12 O -0.50 -11.07 14.64 5.56 0.08 -10.99 16 13 C 0.04 0.67 3.78 -4.97 -0.02 0.66 16 14 N -0.51 -10.84 4.01 -237.51 -0.95 -11.80 16 15 C 0.16 4.16 3.39 -4.97 -0.02 4.14 16 16 C -0.50 -14.62 8.79 -34.44 -0.30 -14.93 16 17 H 0.08 2.60 7.55 -52.49 -0.40 2.20 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -28.31 13.96 55.43 0.77 -27.53 16 20 Si 0.87 22.42 27.47 -169.99 -4.67 17.75 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.27 -6.81 6.54 56.52 0.37 -6.44 16 24 C 0.09 1.72 5.07 -3.82 -0.02 1.70 16 25 C -0.13 -2.12 5.15 -90.62 -0.47 -2.58 16 26 C -0.19 -2.43 10.03 -26.73 -0.27 -2.70 16 27 C -0.18 -2.42 10.25 -26.73 -0.27 -2.69 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.70 6.58 -51.93 -0.34 0.35 16 30 H 0.08 0.81 4.95 -51.93 -0.26 0.55 16 31 H 0.10 1.33 7.22 -51.93 -0.38 0.95 16 32 H 0.08 0.85 8.01 -51.92 -0.42 0.44 16 33 H 0.14 1.91 8.00 -52.48 -0.42 1.49 16 34 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.05 0.85 7.49 -51.93 -0.39 0.46 16 38 H 0.09 1.35 6.98 -51.93 -0.36 0.99 16 39 H 0.04 1.08 5.68 -51.93 -0.29 0.79 16 40 H -0.02 -0.57 7.55 -51.93 -0.39 -0.96 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.10 2.19 6.58 -51.93 -0.34 1.85 16 43 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 44 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 45 H 0.09 1.04 8.03 -51.93 -0.42 0.62 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 390.35 15.07 5.88 5.88 Total: -1.00 -34.39 390.35 -10.13 -44.52 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.35 Total: 2.86 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -3.40 Total: -9.94 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.70 Total: -48.55 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.03 Total: -1.53 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.39 -10.13 -44.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081061777.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.156 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds